FFCP PHASE1:Mm9::chr2:165818178..165818187,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17979 | |EntrezGene=17979 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q05BA5,E9QPU8,A5D6Q2 | |UniProt=Q05BA5,E9QPU8,A5D6Q2 | ||
|association_with_transcript=41bp_to_ENSMUST00000088095,ENSMUST00000099082,NM_008679,uc008nyi.2_5end | |association_with_transcript=41bp_to_ENSMUST00000088095,ENSMUST00000099082,NM_008679,uc008nyi.2_5end | ||
|cluster_id=chr2:165818178..165818187,+ | |||
|description=CAGE_peak_3_at_Ncoa3_5end | |description=CAGE_peak_3_at_Ncoa3_5end | ||
|id=chr2:165818178..165818187,+ | |id=chr2:165818178..165818187,+ | ||
|ontology_enrichment_celltype=CL:0000838!5.88e-08!12;CL:0000542!1.44e-07!13;CL:0000051!1.44e-07!13;CL:0000084!2.52e-07!11;CL:0000827!2.52e-07!11;CL:0000791!5.14e-07!9;CL:0000789!5.14e-07!9;CL:0002420!5.14e-07!9;CL:0002419!5.14e-07!9;CL:0000790!5.14e-07!9 | |ontology_enrichment_celltype=CL:0000838!5.88e-08!12;CL:0000542!1.44e-07!13;CL:0000051!1.44e-07!13;CL:0000084!2.52e-07!11;CL:0000827!2.52e-07!11;CL:0000791!5.14e-07!9;CL:0000789!5.14e-07!9;CL:0002420!5.14e-07!9;CL:0002419!5.14e-07!9;CL:0000790!5.14e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.23e-09,12;CL:0000542,2.26e-08,13;CL:0000051,2.26e-08,13;CL:0000084,4.27e-08,11;CL:0000827,4.27e-08,11;CL:0000791,9.56e-08,9;CL:0000789,9.56e-08,9;CL:0002420,9.56e-08,9;CL:0002419,9.56e-08,9;CL:0000790,9.56e-08,9;CL:0000738,2.96e-07,17;CL:0002087,2.96e-07,17;CL:0000624,5.32e-07,8 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.33e-08!48;UBERON:0006562!2.22e-08!24;UBERON:0001557!2.22e-08!24;UBERON:0001042!2.22e-08!24;UBERON:0008814!2.22e-08!24;UBERON:0009145!2.22e-08!24;UBERON:0004177!2.61e-08!29;UBERON:0002390!4.54e-08!45;UBERON:0003061!4.54e-08!45;UBERON:0002370!5.57e-08!23;UBERON:0000974!5.57e-08!23;UBERON:0004807!5.57e-08!23;UBERON:0005058!5.57e-08!23;UBERON:0003351!5.57e-08!23;UBERON:0009113!5.57e-08!23;UBERON:0003295!5.57e-08!23;UBERON:0009722!5.57e-08!23;UBERON:0005562!5.57e-08!23;UBERON:0007690!5.57e-08!23;UBERON:0003408!2.38e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.95e-09,48;UBERON:0002405,1.95e-09,48;UBERON:0006562,3.68e-09,24;UBERON:0001557,3.68e-09,24;UBERON:0001042,3.68e-09,24;UBERON:0008814,3.68e-09,24;UBERON:0009145,3.68e-09,24;UBERON:0002390,6.21e-09,45;UBERON:0003061,6.21e-09,45;UBERON:0004177,6.44e-09,29;UBERON:0005057,6.44e-09,29;UBERON:0002370,1.04e-08,23;UBERON:0000974,1.04e-08,23;UBERON:0004807,1.04e-08,23;UBERON:0005058,1.04e-08,23;UBERON:0003351,1.04e-08,23;UBERON:0009113,1.04e-08,23;UBERON:0003295,1.04e-08,23;UBERON:0009722,1.04e-08,23;UBERON:0005562,1.04e-08,23;UBERON:0007690,1.04e-08,23;UBERON:0000077,2.12e-08,35;UBERON:0003408,5.85e-08,24;UBERON:0007811,1.12e-07,36;UBERON:0000153,1.34e-07,43;UBERON:0000072,4.43e-07,27 | |||
|phase1_expression=1.92178616525753,2.44282785347553,3.18499467572675,1.81478526784098,1.50268718983904,1.34303417529512,0.467225281191051,11.4919757863003,12.3894075493467,16.1504523162175,2.05461561870606,3.5099749957948,4.45121897821135,5.94458736449182,0.666219523631325,0.607425802169478,0.699561878128147,4.57420139769445,6.85572168028694,5.94145512517242,1.19060606211498,1.48936426801328,2.08959831311148,2.3998863419011,0.68822784320151,0.57423196411502,1.29228598847722,1.07735616342945,0.760093677825496,1.26015064879965,0,0.635030673459631,0,0,0.866554859253824,0,0.408338712524738,0.837063261473815,3.1253413780952,2.09409497589519,2.94115744015507,2.04913645487534,3.39857247121808,0.881277725829041,0.811015449756117,0.183546752161682,0,0.218025156380447,0,0.388859798148567,0.55994568650145,0,5.70460860596304,7.25362142011344,7.05796978199174,2.31533492432352,2.86533439938757,1.54701627683233,1.21389876515759,1.5869729378161,0.633831403506179,0.338844532069132,0,1.7997994345628,0,2.1314403448383,0.299600110518405,0.768436610643109,0.622137673850866,0.270011876663381,0.630974884054146,1.14260393761521,0.883474163806454,0.244981598429908,0.479227355091182,0,0,2.042997409363,0.614426133024974,2.37395317914349,1.64677758484337,0,0,0.56276261003168,0.61119299110724,0.589257170947335,0.854230084794618,1.1183966749518,0.605809546665472,0.604572480854284,7.8263411949453,5.16254326188832,0,0.539703191637817,0,0,0.421333260395256,0.340860645156116,0,0,1.26759077799012,1.28326477414318,5.09610479413291,0,0.649473123033642,0.253359865475099,0.505524445014783,1.25602267690966,7.50919862576798,1.33597925158342,0.173485326766136,0,0.922461989024234,0.452167921657868,1.17588707135705,0.753999547978053,0.988779870937496,1.73519228303894,2.65383165584962,0.647067399789637,1.10420759230197,0.969750506270444,0,0.585561594023094,1.25668024088073,1.02182822083437,2.99537811264801,2.39961092397363,2.03312363316904,0.599162557619291,0.915001205637253,1.50785222535437,1.91206752211504,2.81287003063364,1.0389402227978,1.62241263067758,1.42575109390443,0.870848794270651,3.0326731012041,2.10441855886474,0.260240885925407,0.689706313300419,1.62055916824814,0.90422890701429,1.56483948048054,1.0249097622788,1.03071897015702,1.81092359517311,1.07783996466421,1.13463648100692,1.58356011747554,1.31517439456545,2.22437799380478,0.696504333044333,1.02891068203972,1.19420560091096,3.51106593656617,1.80143534980301,0.284163499395593,0.207125772535502,0.469052119962192,0.900310307305074,0.946978942340841,0.196764231747404,0.771335564436891,0.465067889500816,0.268273401399619,1.16765342367169,0.16455984991348,0.820837320395476,1.37816976227955,0.730999937126662,0.878200461164203,1.20785776884335,1.26173969138476,1.13195073617213,1.32167513193519,0.264450566663544,1.06644125267617,1.16118335930219,1.15980715189884,0.403367049246685,0.444756087689741,0.951128130562796,0,0.494096864172033,0.754005626400808,0.198956472041151,1.36474860983384,0.898819408654221,0.648414149624083,0.995706366271836,1.51734320762465,1.71372768914593,0,1.4255592949172,1.35766741017338,1.68325967736765,1.7706230394792,1.91893192373483,1.72698600625512,1.60416313098341,0,0.83422552858047,0.786235980452812,0.899448449539415,0,0.482354319504834,1.01850340712568,0.863088412352432,0.162135226775035,0.274561413188081,0,1.48856379067401,1.87222603868736,0.757736633841335,0.896987067609561,0.482443521363367,1.47802552133284,1.32643988239339,0.488894929326078,0.848725428875941,0.469380496577004,0.670025029767263,0.714130922658041,1.75620283072019,0.945810864637146,1.10732344824387,1.59454768657487,1.96635977658886,1.72684981865896,1.01254341007058,4.52373851817817,1.63171705145613,2.95058563811422,2.48343071674259,0.80275294993896,1.64096361229084,0.327869890753351,1.00988370881749,0.94652465824877,0.780877488593277,0.861693590931196,0.716906393857656,1.33679204449436,1.41538265394416,2.02405350837447,0,1.97643888973262,1.92792789853084,0.851640511249612,1.24645922567079,1.14020871547503,1.31976098378028,0,0.728341908464944,0.906970670894253,0.565815239267694,0,0.614870295887855,1.03371317267288,1.45413491791002,0.356497378384721,1.26414703174326,1.05418608574999,2.06271086496374,0,1.26042765821917,0.776152102696527,1.28602221018955,1.06404140185364,1.24858172321449,0.493647061806363,0.913394847343798,0.938686832254841,1.69465656691056,0.882113592219848,2.4732937941222,1.77610869365496,1.20625849856312,1.90995750405018,2.46211349617592,1.7488850197791,0.927126510052548,2.05045056957423,1.23832120777933,0.740778109478847,1.88368457004691,2.05041341581538,1.14389086603261,2.20971958992012,1.81936888020755,2.62579950228405,0,1.26534397432454,0.406638934253697,0.432021363287205,0.836353184057875,1.31017538247707,1.07891477107857,1.48776220305605,2.35580347785627,0.259229946583586,0.621339313086926,0.56369293868419,0.897099276263873,0.496375471371293,0.194451188344048,0.258319646955462,0.506868376472335,0.821500670520278,0.651021924219751,0.734015410979976,0.724752362478018,0.288030006257865,2.52808896502543,1.62180172232131,0.718976700153791,1.03936658382236,0.895133478337407,1.78813219303138,3.12508168751919,4.13530676088816,3.63479219813331,3.42930629947499,3.42809029465258,3.80085734885034,4.13710919053417,3.50630706544707,2.26730383615211,2.44184548711471,3.76798197759798,1.17519231454855,0.772758376128762,1.31377732815827,1.09890974560359,2.78678892802786,1.00314420807073,0.564751842617067,0,1.71868654031819,1.03111909406213,0,0.755393897389701,2.02506750069542,1.35096360967266,0.453142408984205,0.51776031175182,0.62272408550506,1.59609949360412,1.02440163452481,1.45864030240976,1.25767897576789,0.919217542250071,0.666740183404846,1.85431551515005,0.320919209591815,0.505394423527595,0.760437899670719,1.50901073108861,1.03005658216871,0.960377286073039,1.32101578597911,0.952587382566147,1.15884325944855,0.77163688185482,1.23625770240992,1.32479028120958,0.685738504770831,0.70990322463735,1.43061713968393,0.290692833264657,0.752875043322645,0.676916863133412,0.914639864363863,1.8414879800649,0.543216455383447,0,0.830445126869219,1.57607171800902,1.63692417267876,0.929621047115796,0.192906610981141,1.74867404556562,0.467863216890817,1.28922632428979,0.382576664137687,0.661774257358546,1.15933917810211 | |phase1_expression=1.92178616525753,2.44282785347553,3.18499467572675,1.81478526784098,1.50268718983904,1.34303417529512,0.467225281191051,11.4919757863003,12.3894075493467,16.1504523162175,2.05461561870606,3.5099749957948,4.45121897821135,5.94458736449182,0.666219523631325,0.607425802169478,0.699561878128147,4.57420139769445,6.85572168028694,5.94145512517242,1.19060606211498,1.48936426801328,2.08959831311148,2.3998863419011,0.68822784320151,0.57423196411502,1.29228598847722,1.07735616342945,0.760093677825496,1.26015064879965,0,0.635030673459631,0,0,0.866554859253824,0,0.408338712524738,0.837063261473815,3.1253413780952,2.09409497589519,2.94115744015507,2.04913645487534,3.39857247121808,0.881277725829041,0.811015449756117,0.183546752161682,0,0.218025156380447,0,0.388859798148567,0.55994568650145,0,5.70460860596304,7.25362142011344,7.05796978199174,2.31533492432352,2.86533439938757,1.54701627683233,1.21389876515759,1.5869729378161,0.633831403506179,0.338844532069132,0,1.7997994345628,0,2.1314403448383,0.299600110518405,0.768436610643109,0.622137673850866,0.270011876663381,0.630974884054146,1.14260393761521,0.883474163806454,0.244981598429908,0.479227355091182,0,0,2.042997409363,0.614426133024974,2.37395317914349,1.64677758484337,0,0,0.56276261003168,0.61119299110724,0.589257170947335,0.854230084794618,1.1183966749518,0.605809546665472,0.604572480854284,7.8263411949453,5.16254326188832,0,0.539703191637817,0,0,0.421333260395256,0.340860645156116,0,0,1.26759077799012,1.28326477414318,5.09610479413291,0,0.649473123033642,0.253359865475099,0.505524445014783,1.25602267690966,7.50919862576798,1.33597925158342,0.173485326766136,0,0.922461989024234,0.452167921657868,1.17588707135705,0.753999547978053,0.988779870937496,1.73519228303894,2.65383165584962,0.647067399789637,1.10420759230197,0.969750506270444,0,0.585561594023094,1.25668024088073,1.02182822083437,2.99537811264801,2.39961092397363,2.03312363316904,0.599162557619291,0.915001205637253,1.50785222535437,1.91206752211504,2.81287003063364,1.0389402227978,1.62241263067758,1.42575109390443,0.870848794270651,3.0326731012041,2.10441855886474,0.260240885925407,0.689706313300419,1.62055916824814,0.90422890701429,1.56483948048054,1.0249097622788,1.03071897015702,1.81092359517311,1.07783996466421,1.13463648100692,1.58356011747554,1.31517439456545,2.22437799380478,0.696504333044333,1.02891068203972,1.19420560091096,3.51106593656617,1.80143534980301,0.284163499395593,0.207125772535502,0.469052119962192,0.900310307305074,0.946978942340841,0.196764231747404,0.771335564436891,0.465067889500816,0.268273401399619,1.16765342367169,0.16455984991348,0.820837320395476,1.37816976227955,0.730999937126662,0.878200461164203,1.20785776884335,1.26173969138476,1.13195073617213,1.32167513193519,0.264450566663544,1.06644125267617,1.16118335930219,1.15980715189884,0.403367049246685,0.444756087689741,0.951128130562796,0,0.494096864172033,0.754005626400808,0.198956472041151,1.36474860983384,0.898819408654221,0.648414149624083,0.995706366271836,1.51734320762465,1.71372768914593,0,1.4255592949172,1.35766741017338,1.68325967736765,1.7706230394792,1.91893192373483,1.72698600625512,1.60416313098341,0,0.83422552858047,0.786235980452812,0.899448449539415,0,0.482354319504834,1.01850340712568,0.863088412352432,0.162135226775035,0.274561413188081,0,1.48856379067401,1.87222603868736,0.757736633841335,0.896987067609561,0.482443521363367,1.47802552133284,1.32643988239339,0.488894929326078,0.848725428875941,0.469380496577004,0.670025029767263,0.714130922658041,1.75620283072019,0.945810864637146,1.10732344824387,1.59454768657487,1.96635977658886,1.72684981865896,1.01254341007058,4.52373851817817,1.63171705145613,2.95058563811422,2.48343071674259,0.80275294993896,1.64096361229084,0.327869890753351,1.00988370881749,0.94652465824877,0.780877488593277,0.861693590931196,0.716906393857656,1.33679204449436,1.41538265394416,2.02405350837447,0,1.97643888973262,1.92792789853084,0.851640511249612,1.24645922567079,1.14020871547503,1.31976098378028,0,0.728341908464944,0.906970670894253,0.565815239267694,0,0.614870295887855,1.03371317267288,1.45413491791002,0.356497378384721,1.26414703174326,1.05418608574999,2.06271086496374,0,1.26042765821917,0.776152102696527,1.28602221018955,1.06404140185364,1.24858172321449,0.493647061806363,0.913394847343798,0.938686832254841,1.69465656691056,0.882113592219848,2.4732937941222,1.77610869365496,1.20625849856312,1.90995750405018,2.46211349617592,1.7488850197791,0.927126510052548,2.05045056957423,1.23832120777933,0.740778109478847,1.88368457004691,2.05041341581538,1.14389086603261,2.20971958992012,1.81936888020755,2.62579950228405,0,1.26534397432454,0.406638934253697,0.432021363287205,0.836353184057875,1.31017538247707,1.07891477107857,1.48776220305605,2.35580347785627,0.259229946583586,0.621339313086926,0.56369293868419,0.897099276263873,0.496375471371293,0.194451188344048,0.258319646955462,0.506868376472335,0.821500670520278,0.651021924219751,0.734015410979976,0.724752362478018,0.288030006257865,2.52808896502543,1.62180172232131,0.718976700153791,1.03936658382236,0.895133478337407,1.78813219303138,3.12508168751919,4.13530676088816,3.63479219813331,3.42930629947499,3.42809029465258,3.80085734885034,4.13710919053417,3.50630706544707,2.26730383615211,2.44184548711471,3.76798197759798,1.17519231454855,0.772758376128762,1.31377732815827,1.09890974560359,2.78678892802786,1.00314420807073,0.564751842617067,0,1.71868654031819,1.03111909406213,0,0.755393897389701,2.02506750069542,1.35096360967266,0.453142408984205,0.51776031175182,0.62272408550506,1.59609949360412,1.02440163452481,1.45864030240976,1.25767897576789,0.919217542250071,0.666740183404846,1.85431551515005,0.320919209591815,0.505394423527595,0.760437899670719,1.50901073108861,1.03005658216871,0.960377286073039,1.32101578597911,0.952587382566147,1.15884325944855,0.77163688185482,1.23625770240992,1.32479028120958,0.685738504770831,0.70990322463735,1.43061713968393,0.290692833264657,0.752875043322645,0.676916863133412,0.914639864363863,1.8414879800649,0.543216455383447,0,0.830445126869219,1.57607171800902,1.63692417267876,0.929621047115796,0.192906610981141,1.74867404556562,0.467863216890817,1.28922632428979,0.382576664137687,0.661774257358546,1.15933917810211 | ||
|short_description=p3@Ncoa3 | |short_description=p3@Ncoa3 | ||
}} | }} |
Latest revision as of 04:21, 26 September 2015
Short description: | p3@Ncoa3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ncoa3_5end |
Coexpression cluster: | NA |
Association with transcript: | 41bp_to_ENSMUST00000088095, ENSMUST00000099082, NM_008679, uc008nyi.2_5end |
EntrezGene: | Ncoa3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.23e-09 | 12 |
lymphocyte | 2.26e-08 | 13 |
common lymphoid progenitor | 2.26e-08 | 13 |
T cell | 4.27e-08 | 11 |
pro-T cell | 4.27e-08 | 11 |
mature alpha-beta T cell | 9.56e-08 | 9 |
alpha-beta T cell | 9.56e-08 | 9 |
immature T cell | 9.56e-08 | 9 |
mature T cell | 9.56e-08 | 9 |
immature alpha-beta T cell | 9.56e-08 | 9 |
leukocyte | 2.96e-07 | 17 |
nongranular leukocyte | 2.96e-07 | 17 |
CD4-positive, alpha-beta T cell | 5.32e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.95e-09 | 48 |
immune system | 1.95e-09 | 48 |
pharynx | 3.68e-09 | 24 |
upper respiratory tract | 3.68e-09 | 24 |
chordate pharynx | 3.68e-09 | 24 |
pharyngeal arch system | 3.68e-09 | 24 |
pharyngeal region of foregut | 3.68e-09 | 24 |
hematopoietic system | 6.21e-09 | 45 |
blood island | 6.21e-09 | 45 |
hemopoietic organ | 6.44e-09 | 29 |
immune organ | 6.44e-09 | 29 |
thymus | 1.04e-08 | 23 |
neck | 1.04e-08 | 23 |
respiratory system epithelium | 1.04e-08 | 23 |
hemolymphoid system gland | 1.04e-08 | 23 |
pharyngeal epithelium | 1.04e-08 | 23 |
thymic region | 1.04e-08 | 23 |
pharyngeal gland | 1.04e-08 | 23 |
entire pharyngeal arch endoderm | 1.04e-08 | 23 |
thymus primordium | 1.04e-08 | 23 |
early pharyngeal endoderm | 1.04e-08 | 23 |
mixed endoderm/mesoderm-derived structure | 2.12e-08 | 35 |
gland of gut | 5.85e-08 | 24 |
craniocervical region | 1.12e-07 | 36 |
anterior region of body | 1.34e-07 | 43 |
segment of respiratory tract | 4.43e-07 | 27 |