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Coexpression cluster:C45: Difference between revisions

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|full_id=C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS
|full_id=C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS
|id=C45
|id=C45
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=CL:0000039!3.15e-112!7;CL:0000586!3.15e-112!7
|ontology_enrichment_disease=DOID:0050687!1.18e-16!143;DOID:305!4.85e-13!106;DOID:162!4.53e-11!235;DOID:14566!1.90e-10!239;DOID:3095!9.13e-09!22;DOID:2994!9.13e-09!22
|ontology_enrichment_disease=DOID:3095!1.49e-36!22;DOID:2994!1.49e-36!22;DOID:305!2.62e-08!106
|ontology_enrichment_uberon=UBERON:0007023!9.69e-30!115;UBERON:0002346!6.39e-17!90;UBERON:0001049!9.27e-17!57;UBERON:0005068!9.27e-17!57;UBERON:0006241!9.27e-17!57;UBERON:0007135!9.27e-17!57;UBERON:0000073!6.78e-16!94;UBERON:0001016!6.78e-16!94;UBERON:0003075!9.71e-16!86;UBERON:0007284!9.71e-16!86;UBERON:0001017!9.85e-16!82;UBERON:0005743!1.44e-15!86;UBERON:0000924!9.52e-15!173;UBERON:0006601!9.52e-15!173;UBERON:0004121!9.94e-14!169;UBERON:0003080!9.01e-13!42;UBERON:0002780!1.69e-12!41;UBERON:0001890!1.69e-12!41;UBERON:0006240!1.69e-12!41;UBERON:0002616!2.48e-12!59;UBERON:0000955!6.55e-12!69;UBERON:0006238!6.55e-12!69;UBERON:0000064!1.06e-11!219;UBERON:0000153!1.37e-10!129;UBERON:0007811!1.37e-10!129;UBERON:0003056!5.56e-10!61;UBERON:0002020!6.96e-10!34;UBERON:0003528!6.96e-10!34;UBERON:0000033!9.33e-10!123;UBERON:0001893!1.77e-09!34;UBERON:0002791!3.01e-09!33;UBERON:0001869!5.01e-09!32;UBERON:0000062!1.60e-08!511;UBERON:0005409!7.51e-08!35;UBERON:0004119!9.46e-08!169;UBERON:0000925!9.46e-08!169;UBERON:0006595!9.46e-08!169;UBERON:0001007!1.00e-07!155;UBERON:0001555!1.00e-07!155;UBERON:0007026!1.00e-07!155;UBERON:0004921!2.22e-07!129;UBERON:0004185!2.22e-07!129;UBERON:0000160!7.47e-07!27
|ontology_enrichment_uberon=UBERON:0000473!2.26e-98!8;UBERON:0003135!6.65e-72!11;UBERON:0000991!3.06e-38!21;UBERON:0009196!3.06e-38!21;UBERON:0009117!3.06e-38!21;UBERON:0005564!3.06e-38!21;UBERON:0004176!1.49e-36!22;UBERON:0003101!1.49e-36!22;UBERON:0000079!1.49e-36!22;UBERON:0002323!5.01e-18!46;UBERON:0003133!2.57e-17!48;UBERON:0004458!5.55e-17!49;UBERON:0003886!1.70e-15!54;UBERON:0005156!2.92e-14!59;UBERON:0000990!2.92e-14!59;UBERON:0002553!7.99e-14!61;UBERON:0000464!3.52e-09!95;UBERON:0000466!1.34e-07!117
|pathway_enrichment=4.38511719267935e-05;0.0277577918296603;7;390;{ASH2L,391} (Static Module):NA
|pathway_enrichment=4.38511719267935e-05;0.0277577918296603;7;390;{ASH2L,391} (Static Module):NA
|tf_chipseq_enrich=POU5F1#5460;13:10.7142742478496:4.89001376979414e-10:4.74635825375028e-08
|tf_chipseq_enrich=POU5F1#5460;13:10.7142742478496:4.89001376979414e-10:4.74635825375028e-08
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}}
}}

Revision as of 16:00, 19 October 2012


Full id: C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS



Phase1 CAGE Peaks

Hg19::chr10:101673782..101673798,-p4@DNMBP
Hg19::chr10:107785237..107785241,+p@chr10:107785237..107785241
+
Hg19::chr10:20659398..20659431,+p@chr10:20659398..20659431
+
Hg19::chr10:70320041..70320065,+p2@TET1
Hg19::chr10:70320074..70320106,+p1@TET1
Hg19::chr10:70320115..70320126,+p3@TET1
Hg19::chr10:72201370..72201379,-p2@NODAL
Hg19::chr10:93427275..93427277,-p1@GAPDHP28
Hg19::chr11:116257171..116257202,-p@chr11:116257171..116257202
-
Hg19::chr11:118780701..118780719,-p17@BCL9L
Hg19::chr11:118780720..118780744,-p18@BCL9L
Hg19::chr11:18665025..18665064,+p@chr11:18665025..18665064
+
Hg19::chr11:19838901..19838948,+p@chr11:19838901..19838948
+
Hg19::chr11:5617365..5617376,+p5@TRIM6
Hg19::chr11:61422619..61422638,-p@chr11:61422619..61422638
-
Hg19::chr11:67201419..67201430,+p6@RPS6KB2
Hg19::chr11:69252217..69252239,+p@chr11:69252217..69252239
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Hg19::chr12:10183271..10183289,+p1@CLEC9A
Hg19::chr12:10183315..10183318,+p3@CLEC9A
Hg19::chr12:118541803..118541847,-p1@VSIG10
Hg19::chr12:118542383..118542415,-p@chr12:118542383..118542415
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Hg19::chr12:118542436..118542448,-p@chr12:118542436..118542448
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Hg19::chr12:12766486..12766492,-p@chr12:12766486..12766492
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Hg19::chr12:13014178..13014186,+p@chr12:13014178..13014186
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Hg19::chr12:1738364..1738410,+p3@WNT5B
Hg19::chr12:1738932..1738944,-p@chr12:1738932..1738944
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Hg19::chr12:1739131..1739158,+p5@WNT5B
Hg19::chr12:1739214..1739224,+p9@WNT5B
Hg19::chr12:30997034..30997071,+p@chr12:30997034..30997071
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Hg19::chr12:31521846..31521872,-p1@ENST00000541749
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Hg19::chr12:31522641..31522653,-p2@ENST00000541749
p2@uc001rkg.3
Hg19::chr12:31522677..31522684,-p4@ENST00000541749
p4@uc001rkg.3
Hg19::chr12:32717010..32717023,+p@chr12:32717010..32717023
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Hg19::chr12:40868681..40868692,+p@chr12:40868681..40868692
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Hg19::chr12:40868706..40868727,+p@chr12:40868706..40868727
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Hg19::chr12:4266411..4266425,-p@chr12:4266411..4266425
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Hg19::chr12:4829035..4829064,+p4@GALNT8
Hg19::chr12:4829561..4829601,+p3@GALNT8
Hg19::chr12:4829624..4829641,+p9@GALNT8
Hg19::chr12:4829976..4829986,+p10@GALNT8
Hg19::chr12:51664289..51664301,-p13@SMAGP
Hg19::chr12:52263117..52263124,-p@chr12:52263117..52263124
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Hg19::chr12:55728036..55728038,+p@chr12:55728036..55728038
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Hg19::chr12:57897995..57898023,+p3@MARS
Hg19::chr12:57898044..57898048,+p30@MARS
Hg19::chr12:68881782..68881794,-p@chr12:68881782..68881794
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Hg19::chr12:695605..695618,-p1@ENST00000538943
Hg19::chr12:695634..695640,-p2@ENST00000538943
Hg19::chr12:6981610..6981615,-p6@SPSB2
Hg19::chr12:6982442..6982478,-p1@SPSB2
Hg19::chr12:6982725..6982736,+p9@LRRC23
Hg19::chr12:6982778..6982862,+p1@RPL13P5
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Hg19::chr12:7036220..7036244,+p@chr12:7036220..7036244
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Hg19::chr12:7941106..7941119,+p@chr12:7941106..7941119
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Hg19::chr12:8044956..8044963,+p6@NANOGP1
Hg19::chr12:8044970..8044999,+p3@NANOGP1
Hg19::chr12:8045003..8045004,+p7@NANOGP1
Hg19::chr12:8045012..8045024,+p4@NANOGP1
Hg19::chr12:8549264..8549286,-p2@LOC389634
Hg19::chr12:8549301..8549320,-p1@LOC389634
Hg19::chr12:8610538..8610556,+p@chr12:8610538..8610556
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Hg19::chr12:8661996..8662001,+p8@CLEC4D
Hg19::chr12:8662057..8662076,+p5@CLEC4D
Hg19::chr12:8662082..8662087,+p9@CLEC4D
Hg19::chr12:8662091..8662102,+p6@CLEC4D
Hg19::chr12:8662510..8662513,+p@chr12:8662510..8662513
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Hg19::chr12:8757519..8757523,-p@chr12:8757519..8757523
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Hg19::chr12:8780181..8780185,+p@chr12:8780181..8780185
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Hg19::chr12:8975964..8975974,+p8@A2ML1
Hg19::chr12:8975979..8975986,+p19@A2ML1
Hg19::chr12:9066514..9066528,+p6@PHC1
Hg19::chr12:98739159..98739191,-p@chr12:98739159..98739191
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Hg19::chr13:43632850..43632863,+p@chr13:43632850..43632863
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Hg19::chr13:43635883..43635901,+p@chr13:43635883..43635901
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Hg19::chr14:101538652..101538663,+p@chr14:101538652..101538663
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Hg19::chr14:64505680..64505688,-p@chr14:64505680..64505688
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Hg19::chr14:65443827..65443838,-p@chr14:65443827..65443838
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Hg19::chr15:33905253..33905262,+p@chr15:33905253..33905262
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Hg19::chr15:33905283..33905287,+p@chr15:33905283..33905287
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Hg19::chr15:33905298..33905312,+p@chr15:33905298..33905312
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Hg19::chr15:33905343..33905360,+p@chr15:33905343..33905360
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Hg19::chr15:33905368..33905387,+p@chr15:33905368..33905387
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Hg19::chr15:33905479..33905486,+p@chr15:33905479..33905486
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Hg19::chr15:63372463..63372475,-p@chr15:63372463..63372475
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Hg19::chr15:65067734..65067746,-p4@RBPMS2
Hg19::chr15:76941230..76941261,-p@chr15:76941230..76941261
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Hg19::chr15:85146979..85147006,+p7@ZSCAN2
Hg19::chr16:1960081..1960097,+p@chr16:1960081..1960097
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Hg19::chr16:24506473..24506474,-p2@BX538205
Hg19::chr16:29841027..29841052,+p@chr16:29841027..29841052
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Hg19::chr16:57139933..57139974,+p@chr16:57139933..57139974
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Hg19::chr16:58688036..58688076,+p@chr16:58688036..58688076
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Hg19::chr16:8164027..8164035,+p@chr16:8164027..8164035
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Hg19::chr16:8164075..8164086,+p@chr16:8164075..8164086
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Hg19::chr16:8222290..8222293,+p@chr16:8222290..8222293
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Hg19::chr17:17075989..17076004,+p13@MPRIP
Hg19::chr17:27135638..27135652,-p@chr17:27135638..27135652
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Hg19::chr17:40824261..40824307,-p6@PLEKHH3
Hg19::chr17:41311953..41311960,-p@chr17:41311953..41311960
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Hg19::chr17:41620424..41620445,-p@chr17:41620424..41620445
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Hg19::chr17:41620482..41620492,-p@chr17:41620482..41620492
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Hg19::chr17:41620493..41620539,-p@chr17:41620493..41620539
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Hg19::chr17:46626776..46626785,+p3@ENST00000465846
Hg19::chr17:46626828..46626840,+p2@ENST00000465846
Hg19::chr17:46626844..46626857,+p1@ENST00000465846
Hg19::chr17:805873..805882,-p@chr17:805873..805882
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Hg19::chr18:1998982..1998990,-p@chr18:1998982..1998990
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Hg19::chr18:1999518..1999532,-p@chr18:1999518..1999532
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Hg19::chr18:1999607..1999621,-p@chr18:1999607..1999621
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Hg19::chr18:43233957..43233960,+p@chr18:43233957..43233960
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Hg19::chr18:43233993..43234005,+p@chr18:43233993..43234005
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Hg19::chr19:12708091..12708102,-p5@ZNF490
Hg19::chr19:12708113..12708120,-p7@ZNF490
Hg19::chr19:1496279..1496298,+p@chr19:1496279..1496298
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Hg19::chr19:1497864..1497872,-p@chr19:1497864..1497872
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Hg19::chr19:1497873..1497887,-p@chr19:1497873..1497887
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Hg19::chr19:1497890..1497917,-p@chr19:1497890..1497917
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Hg19::chr19:1497995..1498041,-p@chr19:1497995..1498041
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Hg19::chr19:1584892..1584902,-p4@M77818
Hg19::chr19:1584920..1584932,-p3@M77818
Hg19::chr19:19217081..19217110,+p@chr19:19217081..19217110
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Hg19::chr19:20188831..20188844,+p2@ZNF90
Hg19::chr19:20278043..20278054,+p2@ZNF486
Hg19::chr19:22193706..22193717,-p2@ZNF208
Hg19::chr19:22193731..22193751,-p1@ZNF208
Hg19::chr19:22361177..22361180,-p@chr19:22361177..22361180
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Hg19::chr19:22365384..22365388,-p@chr19:22365384..22365388
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Hg19::chr19:22398533..22398542,-p2@ZNF676
Hg19::chr19:22398550..22398579,-p1@ZNF676
Hg19::chr19:22469215..22469229,+p2@ZNF729
Hg19::chr19:22469236..22469266,+p1@ZNF729
Hg19::chr19:23015086..23015104,+p@chr19:23015086..23015104
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Hg19::chr19:23185934..23185946,-p@chr19:23185934..23185946
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Hg19::chr19:23185947..23185992,-p@chr19:23185947..23185992
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Hg19::chr19:36746291..36746305,+p@chr19:36746291..36746305
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Hg19::chr19:36746317..36746322,+p@chr19:36746317..36746322
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Hg19::chr19:36746340..36746360,+p@chr19:36746340..36746360
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Hg19::chr19:36748627..36748637,+p@chr19:36748627..36748637
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Hg19::chr19:384543..384550,+p@chr19:384543..384550
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Hg19::chr19:39110377..39110406,+p@chr19:39110377..39110406
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Hg19::chr19:40431300..40431312,-p@chr19:40431300..40431312
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Hg19::chr19:40431313..40431316,-p@chr19:40431313..40431316
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Hg19::chr19:41156239..41156261,-p@chr19:41156239..41156261
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Hg19::chr19:55452976..55452992,-p2@NLRP7
Hg19::chr19:55458860..55458904,-p1@NLRP7
Hg19::chr19:562509..562513,+p@chr19:562509..562513
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Hg19::chr19:58571896..58571933,-p@chr19:58571896..58571933
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Hg19::chr19:58571939..58571949,-p@chr19:58571939..58571949
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Hg19::chr19:59049718..59049729,-p@chr19:59049718..59049729
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Hg19::chr19:6743345..6743390,+p@chr19:6743345..6743390
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Hg19::chr1:10476975..10476992,+p@chr1:10476975..10476992
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Hg19::chr1:10476999..10477027,+p@chr1:10476999..10477027
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Hg19::chr1:111888890..111888915,+p2@C1orf88
Hg19::chr1:161046266..161046273,-p12@PVRL4
Hg19::chr1:200017618..200017629,+p@chr1:200017618..200017629
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Hg19::chr1:203488513..203488529,-p@chr1:203488513..203488529
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Hg19::chr1:205263928..205263944,+p@chr1:205263928..205263944
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Hg19::chr1:210427197..210427202,-p@chr1:210427197..210427202
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Hg19::chr1:213090463..213090487,+p@chr1:213090463..213090487
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Hg19::chr1:214997172..214997216,+p@chr1:214997172..214997216
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Hg19::chr1:214997290..214997300,+p@chr1:214997290..214997300
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Hg19::chr1:214997314..214997320,+p@chr1:214997314..214997320
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Hg19::chr1:21835305..21835326,+p@chr1:21835305..21835326
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Hg19::chr1:227034858..227034868,+p@chr1:227034858..227034868
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Hg19::chr1:228080411..228080426,-p@chr1:228080411..228080426
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Hg19::chr1:229166795..229166799,+p@chr1:229166795..229166799
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Hg19::chr1:229389135..229389144,-p@chr1:229389135..229389144
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Hg19::chr1:24181169..24181177,-p@chr1:24181169..24181177
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Hg19::chr1:24239954..24239975,-p4@CNR2
Hg19::chr1:24239991..24240012,-p6@CNR2
Hg19::chr1:244895819..244895857,-p@chr1:244895819..244895857
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Hg19::chr1:244899126..244899130,+p@chr1:244899126..244899130
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Hg19::chr1:29064167..29064196,-p@chr1:29064167..29064196
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Hg19::chr1:29064330..29064340,+p19@YTHDF2
Hg19::chr1:37916794..37916812,-p@chr1:37916794..37916812
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Hg19::chr1:38709054..38709062,+p@chr1:38709054..38709062
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Hg19::chr1:44584568..44584585,+p3@KLF17
Hg19::chr1:45769711..45769721,-p@chr1:45769711..45769721
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Hg19::chr1:45781908..45781921,+p@chr1:45781908..45781921
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Hg19::chr1:45782541..45782544,+p@chr1:45782541..45782544
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Hg19::chr1:48027339..48027366,-p@chr1:48027339..48027366
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Hg19::chr1:52498511..52498522,-p@chr1:52498511..52498522
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Hg19::chr1:52498542..52498551,-p@chr1:52498542..52498551
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Hg19::chr1:52498563..52498571,-p@chr1:52498563..52498571
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Hg19::chr1:6260758..6260768,-p16@RPL22
Hg19::chr1:6260782..6260787,-p18@RPL22
Hg19::chr1:6260914..6260929,-p6@RPL22
Hg19::chr1:6260935..6260943,-p14@RPL22
Hg19::chr1:63787400..63787442,+p@chr1:63787400..63787442
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Hg19::chr1:6535145..6535182,-p@chr1:6535145..6535182
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Hg19::chr1:80167417..80167424,-p@chr1:80167417..80167424
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Hg19::chr1:8971708..8971721,+p@chr1:8971708..8971721
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Hg19::chr20:20801690..20801714,+p@chr20:20801690..20801714
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Hg19::chr20:30016926..30016933,-p1@DEFB122
Hg19::chr20:42295576..42295586,-p@chr20:42295576..42295586
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Hg19::chr20:42295589..42295608,-p@chr20:42295589..42295608
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Hg19::chr20:46000259..46000273,-p@chr20:46000259..46000273
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Hg19::chr20:46000274..46000283,-p@chr20:46000274..46000283
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Hg19::chr20:47537123..47537134,+p@chr20:47537123..47537134
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Hg19::chr20:4982815..4982842,-p@chr20:4982815..4982842
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Hg19::chr20:55311563..55311590,+p@chr20:55311563..55311590
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Hg19::chr20:62179094..62179105,-p1@SRMS
Hg19::chr21:19273574..19273596,+p3@CHODL
Hg19::chr21:19942690..19942697,-p@chr21:19942690..19942697
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Hg19::chr21:45681737..45681760,-p2@DNMT3L
Hg19::chr21:45681768..45681773,-p4@DNMT3L
Hg19::chr21:45681774..45681821,-p1@DNMT3L
Hg19::chr21:45682241..45682265,-p3@DNMT3L
Hg19::chr21:45705590..45705606,+p4@AIRE
Hg19::chr21:45705703..45705711,+p3@AIRE
Hg19::chr21:45705733..45705743,+p2@AIRE
Hg19::chr21:45705752..45705767,+p1@AIRE
Hg19::chr21:45712885..45712927,+p@chr21:45712885..45712927
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Hg19::chr21:45788930..45788938,+p18@TRPM2
Hg19::chr21:45789000..45789013,+p10@TRPM2
Hg19::chr22:18924881..18924899,+p@chr22:18924881..18924899
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Hg19::chr22:18924919..18924924,+p@chr22:18924919..18924924
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Hg19::chr22:23879057..23879068,+p@chr22:23879057..23879068
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Hg19::chr22:30037861..30037886,+p@chr22:30037861..30037886
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Hg19::chr2:103129352..103129360,-p@chr2:103129352..103129360
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Hg19::chr2:133025613..133025617,+p@chr2:133025613..133025617
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Hg19::chr2:15358971..15358990,-p@chr2:15358971..15358990
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Hg19::chr2:15359040..15359053,-p@chr2:15359040..15359053
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Hg19::chr2:153648847..153648856,+p@chr2:153648847..153648856
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Hg19::chr2:153648892..153648898,+p@chr2:153648892..153648898
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Hg19::chr2:1629237..1629247,-p3@ENST00000366424
Hg19::chr2:1977573..1977620,+p@chr2:1977573..1977620
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Hg19::chr2:206502602..206502607,-p@chr2:206502602..206502607
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Hg19::chr2:208942961..208942981,-p@chr2:208942961..208942981
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Hg19::chr2:233271546..233271559,+p1@ALPPL2
Hg19::chr2:233272040..233272077,+p@chr2:233272040..233272077
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Hg19::chr2:233272561..233272592,+p@chr2:233272561..233272592
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Hg19::chr2:233793819..233793828,-p@chr2:233793819..233793828
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Hg19::chr2:233986711..233986721,+p13@INPP5D
Hg19::chr2:25782155..25782170,-p@chr2:25782155..25782170
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Hg19::chr2:25782256..25782261,-p@chr2:25782256..25782261
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Hg19::chr2:25782272..25782282,-p@chr2:25782272..25782282
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Hg19::chr2:27708535..27708550,-p@chr2:27708535..27708550
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Hg19::chr2:30838884..30838913,+p@chr2:30838884..30838913
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Hg19::chr2:3106532..3106541,-p@chr2:3106532..3106541
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Hg19::chr2:3106656..3106664,-p@chr2:3106656..3106664
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Hg19::chr2:3108401..3108439,-p@chr2:3108401..3108439
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Hg19::chr2:37415810..37415835,-p4@SULT6B1
Hg19::chr2:47923106..47923113,+p5@ENST00000454137
Hg19::chr2:47923129..47923148,+p1@ENST00000454137
Hg19::chr2:55193503..55193511,+p@chr2:55193503..55193511
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Hg19::chr2:88752207..88752218,-p1@FOXI3
Hg19::chr3:126139151..126139175,-p@chr3:126139151..126139175
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Hg19::chr3:126139285..126139293,-p@chr3:126139285..126139293
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Hg19::chr3:128202976..128202986,-p@chr3:128202976..128202986
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Hg19::chr3:128203013..128203022,-p19@GATA2
Hg19::chr3:128203047..128203053,-p25@GATA2
Hg19::chr3:132345911..132345932,-p12@ACAD11
Hg19::chr3:132345940..132345968,-p9@ACAD11
Hg19::chr3:185279861..185279867,+p@chr3:185279861..185279867
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Hg19::chr3:185279890..185279917,+p@chr3:185279890..185279917
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Hg19::chr3:186381690..186381701,-p@chr3:186381690..186381701
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Hg19::chr3:195637091..195637114,-p@chr3:195637091..195637114
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Hg19::chr3:195870951..195870964,+p@chr3:195870951..195870964
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Hg19::chr3:195870970..195870991,+p@chr3:195870970..195870991
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Hg19::chr3:195871043..195871046,+p@chr3:195871043..195871046
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Hg19::chr3:48520693..48520700,-p27@SHISA5
Hg19::chr3:9895464..9895477,-p@chr3:9895464..9895477
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Hg19::chr4:119436198..119436223,-p@chr4:119436198..119436223
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Hg19::chr4:126279830..126279835,+p@chr4:126279830..126279835
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Hg19::chr4:138371882..138371889,-p@chr4:138371882..138371889
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Hg19::chr4:170861350..170861364,+p@chr4:170861350..170861364
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Hg19::chr4:170861392..170861432,+p@chr4:170861392..170861432
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Hg19::chr4:1745397..1745403,+p@chr4:1745397..1745403
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Hg19::chr4:189030532..189030542,-p2@TRIML2
Hg19::chr4:26300666..26300693,-p@chr4:26300666..26300693
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Hg19::chr4:3929543..3929571,+p@chr4:3929543..3929571
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Hg19::chr4:779349..779383,+p@chr4:779349..779383
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Hg19::chr5:1073897..1073909,-p@chr5:1073897..1073909
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Hg19::chr5:116114588..116114600,+p@chr5:116114588..116114600
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Hg19::chr5:116171929..116171946,+p@chr5:116171929..116171946
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Hg19::chr5:116172030..116172035,+p@chr5:116172030..116172035
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Hg19::chr5:116172048..116172054,+p@chr5:116172048..116172054
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Hg19::chr5:116172058..116172070,+p@chr5:116172058..116172070
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Hg19::chr5:116172074..116172078,+p@chr5:116172074..116172078
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Hg19::chr5:116172087..116172100,+p@chr5:116172087..116172100
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Hg19::chr5:116172110..116172115,+p@chr5:116172110..116172115
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Hg19::chr5:116258219..116258222,+p@chr5:116258219..116258222
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Hg19::chr5:116258697..116258703,+p@chr5:116258697..116258703
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Hg19::chr5:133764015..133764029,+p@chr5:133764015..133764029
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Hg19::chr5:137595432..137595441,-p@chr5:137595432..137595441
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Hg19::chr5:140053152..140053174,-p1@DND1
Hg19::chr5:1414652..1414695,+p@chr5:1414652..1414695
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Hg19::chr5:152822087..152822106,-p@chr5:152822087..152822106
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Hg19::chr5:176766413..176766418,-p@chr5:176766413..176766418
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Hg19::chr5:2671232..2671241,-p@chr5:2671232..2671241
-
Hg19::chr5:76103261..76103268,-p@chr5:76103261..76103268
-
Hg19::chr5:76103271..76103282,-p@chr5:76103271..76103282
-
Hg19::chr5:81276724..81276758,+p@chr5:81276724..81276758
+
Hg19::chr5:81277020..81277028,+p@chr5:81277020..81277028
+
Hg19::chr6:29648890..29648944,-p1@ZFP57
Hg19::chr6:32146685..32146730,+p1@AK311221
Hg19::chr6:33084520..33084544,+p@chr6:33084520..33084544
+
Hg19::chr6:33085688..33085698,-p@chr6:33085688..33085698
-
Hg19::chr6:33754853..33754857,-p9@LEMD2
Hg19::chr6:33925846..33925881,+p@chr6:33925846..33925881
+
Hg19::chr6:34060528..34060536,-p@chr6:34060528..34060536
-
Hg19::chr6:34664490..34664502,-p4@C6orf106
Hg19::chr6:44281009..44281021,-p1@AB462941
Hg19::chr6:44281043..44281091,-p1@AARS2
Hg19::chr6:45612333..45612363,+p@chr6:45612333..45612363
+
Hg19::chr6:73934081..73934108,-p@chr6:73934081..73934108
-
Hg19::chr6:73934119..73934140,-p@chr6:73934119..73934140
-
Hg19::chr6:74063966..74063975,-p2@DPPA5
Hg19::chr6:74063979..74064006,-p1@DPPA5
Hg19::chr6:94126678..94126679,+p@chr6:94126678..94126679
+
Hg19::chr6:98426878..98426883,+p@chr6:98426878..98426883
+
Hg19::chr7:100810466..100810470,+p@chr7:100810466..100810470
+
Hg19::chr7:100942873..100942877,+p3@ENST00000429254
Hg19::chr7:118824385..118824421,+p@chr7:118824385..118824421
+
Hg19::chr7:139168402..139168431,-p1@KLRG2
Hg19::chr7:150721570..150721591,-p1@ATG9B
Hg19::chr7:150721603..150721614,-p3@ATG9B
Hg19::chr7:153881582..153881612,+p@chr7:153881582..153881612
+
Hg19::chr7:153881628..153881633,+p@chr7:153881628..153881633
+
Hg19::chr7:1606506..1606524,-p@chr7:1606506..1606524
-
Hg19::chr7:20162711..20162725,-p@chr7:20162711..20162725
-
Hg19::chr7:20165029..20165037,-p1@ENST00000415499
Hg19::chr7:22841866..22841874,+p@chr7:22841866..22841874
+
Hg19::chr7:22851728..22851753,-p@chr7:22851728..22851753
-
Hg19::chr7:2306697..2306704,+p@chr7:2306697..2306704
+
Hg19::chr7:2309320..2309348,-p@chr7:2309320..2309348
-
Hg19::chr7:34695022..34695030,-p@chr7:34695022..34695030
-
Hg19::chr7:34695063..34695082,-p@chr7:34695063..34695082
-
Hg19::chr7:34697973..34697982,+p3@NPSR1
Hg19::chr7:36700685..36700690,-p23@AOAH
Hg19::chr7:36700766..36700772,-p19@AOAH
Hg19::chr7:36700899..36700923,-p9@AOAH
Hg19::chr7:45132131..45132142,-p@chr7:45132131..45132142
-
Hg19::chr7:47991877..47991888,-p@chr7:47991877..47991888
-
Hg19::chr7:47991889..47991899,-p@chr7:47991889..47991899
-
Hg19::chr7:47991973..47991982,-p@chr7:47991973..47991982
-
Hg19::chr7:47991989..47992000,-p@chr7:47991989..47992000
-
Hg19::chr7:48019203..48019228,-p2@HUS1
Hg19::chr7:48075789..48075807,+p@chr7:48075789..48075807
+
Hg19::chr7:48075824..48075829,+p@chr7:48075824..48075829
+
Hg19::chr7:555556..555565,+p@chr7:555556..555565
+
Hg19::chr7:56516044..56516102,-p1@LOC650226
Hg19::chr7:57271322..57271346,-p1@GUSBP12
Hg19::chr7:64710292..64710295,+p@chr7:64710292..64710295
+
Hg19::chr7:64712750..64712781,-p@chr7:64712750..64712781
-
Hg19::chr7:64712789..64712809,-p@chr7:64712789..64712809
-
Hg19::chr7:6945691..6945696,-p@chr7:6945691..6945696
-
Hg19::chr8:127908964..127908971,+p@chr8:127908964..127908971
+
Hg19::chr8:133637624..133637635,-p5@LRRC6
Hg19::chr8:133637642..133637653,-p6@LRRC6
Hg19::chr8:133637661..133637671,-p9@LRRC6
Hg19::chr8:142213424..142213466,-p@chr8:142213424..142213466
-
Hg19::chr8:144371739..144371750,+p4@ZNF696
Hg19::chr8:145986393..145986422,-p2@AK123919
Hg19::chr8:146018880..146018887,-p@chr8:146018880..146018887
-
Hg19::chr8:146018920..146018931,-p@chr8:146018920..146018931
-
Hg19::chr8:38725662..38725696,-p@chr8:38725662..38725696
-
Hg19::chr8:41676284..41676287,-p@chr8:41676284..41676287
-
Hg19::chr8:48087527..48087530,-p@chr8:48087527..48087530
-
Hg19::chr8:48090062..48090099,+p@chr8:48090062..48090099
+
Hg19::chr8:54935001..54935014,-p4@TCEA1
Hg19::chr8:59555976..59555985,-p@chr8:59555976..59555985
-
Hg19::chr8:59572512..59572526,-p20@NSMAF
Hg19::chr8:68255564..68255643,-p2@ARFGEF1
Hg19::chr8:74993081..74993090,+p@chr8:74993081..74993090
+
Hg19::chr8:9029288..9029294,-p@chr8:9029288..9029294
-
Hg19::chr8:9040907..9040911,-p@chr8:9040907..9040911
-
Hg19::chr8:9045640..9045643,+p@chr8:9045640..9045643
+
Hg19::chr8:9046592..9046604,+p1@ENST00000417333
Hg19::chr9:102657271..102657276,-p@chr9:102657271..102657276
-
Hg19::chr9:123291136..123291150,-p@chr9:123291136..123291150
-
Hg19::chr9:128348772..128348774,-p@chr9:128348772..128348774
-
Hg19::chr9:131971154..131971174,+p@chr9:131971154..131971174
+
Hg19::chr9:137688594..137688639,+p@chr9:137688594..137688639
+
Hg19::chr9:21488379..21488389,+p@chr9:21488379..21488389
+
Hg19::chr9:84147312..84147316,-p@chr9:84147312..84147316
-
Hg19::chrX:119149651..119149662,-p3@ENST00000454625
Hg19::chrX:119149664..119149674,-p4@ENST00000454625
Hg19::chrX:119149690..119149707,-p1@ENST00000454625
Hg19::chrX:119274598..119274624,+p@chrX:119274598..119274624
+
Hg19::chrX:119709817..119709841,+p@chrX:119709817..119709841
+
Hg19::chrX:119709847..119709858,+p@chrX:119709847..119709858
+
Hg19::chrX:130412990..130413001,-p@chrX:130412990..130413001
-
Hg19::chrX:130413304..130413342,-p2@IGSF1
Hg19::chrX:134529229..134529236,+p@chrX:134529229..134529236
+
Hg19::chrX:138287176..138287192,-p1@FGF13
Hg19::chrX:23677746..23677755,-p@chrX:23677746..23677755
-
Hg19::chrX:23677790..23677799,-p@chrX:23677790..23677799
-
Hg19::chrX:23677960..23677964,-p@chrX:23677960..23677964
-
Hg19::chrX:23678144..23678147,-p@chrX:23678144..23678147
-
Hg19::chrX:33101294..33101324,-p@chrX:33101294..33101324
-
Hg19::chrX:33101327..33101328,-p@chrX:33101327..33101328
-
Hg19::chrX:33101567..33101571,-p@chrX:33101567..33101571
-
Hg19::chrX:33101580..33101589,-p@chrX:33101580..33101589
-
Hg19::chrX:33101647..33101653,-p@chrX:33101647..33101653
-
Hg19::chrX:33101666..33101667,-p@chrX:33101666..33101667
-
Hg19::chrX:67454493..67454516,-p@chrX:67454493..67454516
-
Hg19::chrX:70128533..70128543,-p2@TEX11
Hg19::chrX:70128554..70128574,-p1@TEX11
Hg19::chrX:70128580..70128581,-p3@TEX11
Hg19::chrX:71950370..71950409,+p@chrX:71950370..71950409
+
Hg19::chrX:77318536..77318541,-p@chrX:77318536..77318541
-
Hg19::chrX:9412722..9412735,-p@chrX:9412722..9412735
-
Hg19::chrX:96374989..96375006,+p@chrX:96374989..96375006
+
Hg19::chrX:96375007..96375024,+p@chrX:96375007..96375024
+
Hg19::chrX:99658204..99658235,-p@chrX:99658204..99658235
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
4.38511719267935e-050.02775779182966037390{ASH2L,391} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
germ line cell3.15e-1127
germ cell3.15e-1127
Uber Anatomy
Ontology termp-valuen
testis2.26e-988
male reproductive organ6.65e-7211
gonad3.06e-3821
indifferent external genitalia3.06e-3821
indifferent gonad3.06e-3821
gonad primordium3.06e-3821
external genitalia1.49e-3622
male organism1.49e-3622
male reproductive system1.49e-3622
body cavity5.01e-1846
reproductive organ2.57e-1748
body cavity or lining5.55e-1749
body cavity precursor1.70e-1554
reproductive structure2.92e-1459
reproductive system2.92e-1459
anatomical cavity7.99e-1461
anatomical space3.52e-0995
immaterial anatomical entity1.34e-07117
Disease
Ontology termp-valuen
germ cell and embryonal cancer1.49e-3622
germ cell cancer1.49e-3622
carcinoma2.62e-08106


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
POU5F1#54601310.71427424784964.89001376979414e-104.74635825375028e-08



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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