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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269611904680974,1.42876488501122,1.44692778776006,0.361643392444473,0.36997255194985,0.529886373336497,0,0,0,0,0,0,0,0,0,0,0.667815568206548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56443804640041,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0716601710131013,0.170978156452844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000181!8.20e-29!5;CL:0000417!8.20e-29!5;CL:0000668!8.20e-29!5;CL:0000412!8.20e-29!5;CL:0000182!8.20e-29!5;CL:0000057!6.88e-10!1;CL:0000632!6.88e-10!1;CL:0000223!1.78e-07!20
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!4.72e-25!22;UBERON:0007499!4.72e-25!22;UBERON:0006925!4.72e-25!22;UBERON:0009497!4.72e-25!22;UBERON:0000015!4.72e-25!22;UBERON:0002423!4.72e-25!22;UBERON:0006235!4.72e-25!22;UBERON:0008835!4.72e-25!22;UBERON:0003894!4.72e-25!22;UBERON:0004161!4.72e-25!22;UBERON:0008836!4.72e-25!22;UBERON:0009854!5.92e-24!23;UBERON:0009856!5.92e-24!23;UBERON:0002365!5.10e-22!25;UBERON:0002330!5.10e-22!25;UBERON:0005256!4.34e-12!45;UBERON:0003914!1.47e-11!47;UBERON:0005172!4.54e-11!49;UBERON:0005173!4.54e-11!49;UBERON:0002417!4.54e-11!49;UBERON:0000916!4.54e-11!49;UBERON:0003929!8.15e-10!55;UBERON:0002368!5.85e-09!60;UBERON:0003104!8.35e-09!61;UBERON:0009142!8.35e-09!61;UBERON:0002530!3.11e-08!65;UBERON:0000490!4.22e-08!66;UBERON:0009569!4.22e-08!66;UBERON:0005911!9.99e-08!69;UBERON:0000949!2.20e-07!72
}}
}}

Revision as of 21:12, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:24635378..24635387,-p@chr10:24635378..24635387
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Mm9::chr11:54937465..54937483,-p@chr11:54937465..54937483
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Mm9::chr12:105274041..105274062,-p@chr12:105274041..105274062
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Mm9::chr12:105576582..105576626,+p1@Serpina3k
Mm9::chr13:64208454..64208487,-p@chr13:64208454..64208487
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Mm9::chr1:90003409..90003415,+p2@Ugt1a6b
Mm9::chr4:60434820..60434827,-p1@Mup12
p1@Mup16
p1@Mup17
p1@Mup19
p1@Mup8
p1@Mup9
Mm9::chr7:74792456..74792469,+p7@Ttc23
Mm9::chr9:82994262..82994284,+p@chr9:82994262..82994284
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell8.20e-295
endopolyploid cell8.20e-295
parenchymal cell8.20e-295
polyploid cell8.20e-295
hepatocyte8.20e-295
fibroblast6.88e-101
hepatic stellate cell6.88e-101
endodermal cell1.78e-0720

Uber Anatomy
Ontology termp-valuen
liver4.72e-2522
epithelial sac4.72e-2522
digestive gland4.72e-2522
epithelium of foregut-midgut junction4.72e-2522
anatomical boundary4.72e-2522
hepatobiliary system4.72e-2522
foregut-midgut junction4.72e-2522
hepatic diverticulum4.72e-2522
liver primordium4.72e-2522
septum transversum4.72e-2522
liver bud4.72e-2522
digestive tract diverticulum5.92e-2423
sac5.92e-2423
exocrine gland5.10e-2225
exocrine system5.10e-2225
trunk mesenchyme4.34e-1245
epithelial tube1.47e-1147
abdomen element4.54e-1149
abdominal segment element4.54e-1149
abdominal segment of trunk4.54e-1149
abdomen4.54e-1149
gut epithelium8.15e-1055
endocrine gland5.85e-0960
mesenchyme8.35e-0961
entire embryonic mesenchyme8.35e-0961
gland3.11e-0865
unilaminar epithelium4.22e-0866
subdivision of trunk4.22e-0866
endo-epithelium9.99e-0869
endocrine system2.20e-0772


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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