FFCP PHASE1:Mm9::chr4:104940113..104940131,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:104940113..104940131,+|id=chr4:104940113..104940131,+|ontology_enrichment_celltype=CL:0000473!2.20e-14!3;CL:0000627!2.20e-14!3;CL:0000682!2.20e-14!3;CL:0000239!6.89e-12!6;CL:0000677!6.89e-12!6;CL:0000212!6.89e-12!6;CL:0000584!6.89e-12!6;CL:0000075!3.29e-10!7;CL:0000066!5.68e-08!25;CL:0002563!5.79e-08!9;CL:0002251!5.79e-08!9|ontology_enrichment_celltype_v019_2=CL:0000682,2.57e-20,3;CL:0000239,5.98e-17,6;CL:0000677,5.98e-17,6;CL:0000584,5.98e-17,6;CL:0000075,1.42e-14,7;CL:0000066,5.41e-12,25;CL:0002563,2.13e-11,9;CL:0002251,2.13e-11,9;CL:0000473,4.89e-09,7;CL:0002076,6.35e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!4.55e-27!15;UBERON:0001242!4.63e-20!13;UBERON:0000060!4.63e-20!13;UBERON:0001262!4.63e-20!13;UBERON:0004786!4.63e-20!13;UBERON:0004923!2.35e-16!24;UBERON:0000014!5.80e-14!5;UBERON:0001003!5.80e-14!5;UBERON:0002097!5.80e-14!5;UBERON:0002199!5.80e-14!5;UBERON:0007029!5.80e-14!5;UBERON:0007376!5.80e-14!5;UBERON:0002416!5.80e-14!5;UBERON:0007383!5.80e-14!5;UBERON:0000331!2.37e-13!3;UBERON:0002116!2.37e-13!3;UBERON:0001204!2.37e-13!3;UBERON:0001168!2.37e-13!3;UBERON:0001962!1.22e-09!2;UBERON:0001961!1.22e-09!2;UBERON:0001744!1.22e-09!2;UBERON:0000160!2.53e-08!43;UBERON:0003350!5.79e-08!9;UBERON:0004808!5.79e-08!9;UBERON:0001277!5.79e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.63e-20,15;UBERON:0001962,2.26e-13,2;UBERON:0001961,2.26e-13,2;UBERON:0001744,2.26e-13,2;UBERON:0004923,2.35e-12,24;UBERON:0001242,3.41e-12,13;UBERON:0001262,3.41e-12,13;UBERON:0004786,3.41e-12,13;UBERON:0000014,7.79e-12,5;UBERON:0001003,7.79e-12,5;UBERON:0002097,7.79e-12,5;UBERON:0002199,7.79e-12,5;UBERON:0007029,7.79e-12,5;UBERON:0007376,7.79e-12,5;UBERON:0002416,7.79e-12,5;UBERON:0007383,7.79e-12,5;UBERON:0003350,2.13e-11,9;UBERON:0004808,2.13e-11,9;UBERON:0001277,2.13e-11,9;UBERON:0000485,2.27e-09,11;UBERON:0002465,3.19e-09,3;UBERON:0003199,1.53e-07,1;UBERON:0000160,5.20e-07,31|phase1_expression=0,6.2815573375085,5.0049916332849,0,0,1.6787927191189,2.10251376535973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23989391910769,2.2940928106717,6.31655160526522,5.1691439539089,8.61884930743556,0.190023419456374,0.756090389279792,9.5344119581781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,1.85115396664481,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48397627647332,0,0.482503399425247,2.626191568069,5.58079059133208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0|short_description=p@chr4:104940113..104940131,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:104940113..104940131,+ | |||
|id=chr4:104940113..104940131,+ | |||
|ontology_enrichment_celltype=CL:0000473!2.20e-14!3;CL:0000627!2.20e-14!3;CL:0000682!2.20e-14!3;CL:0000239!6.89e-12!6;CL:0000677!6.89e-12!6;CL:0000212!6.89e-12!6;CL:0000584!6.89e-12!6;CL:0000075!3.29e-10!7;CL:0000066!5.68e-08!25;CL:0002563!5.79e-08!9;CL:0002251!5.79e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.57e-20,3;CL:0000239,5.98e-17,6;CL:0000677,5.98e-17,6;CL:0000584,5.98e-17,6;CL:0000075,1.42e-14,7;CL:0000066,5.41e-12,25;CL:0002563,2.13e-11,9;CL:0002251,2.13e-11,9;CL:0000473,4.89e-09,7;CL:0002076,6.35e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!4.55e-27!15;UBERON:0001242!4.63e-20!13;UBERON:0000060!4.63e-20!13;UBERON:0001262!4.63e-20!13;UBERON:0004786!4.63e-20!13;UBERON:0004923!2.35e-16!24;UBERON:0000014!5.80e-14!5;UBERON:0001003!5.80e-14!5;UBERON:0002097!5.80e-14!5;UBERON:0002199!5.80e-14!5;UBERON:0007029!5.80e-14!5;UBERON:0007376!5.80e-14!5;UBERON:0002416!5.80e-14!5;UBERON:0007383!5.80e-14!5;UBERON:0000331!2.37e-13!3;UBERON:0002116!2.37e-13!3;UBERON:0001204!2.37e-13!3;UBERON:0001168!2.37e-13!3;UBERON:0001962!1.22e-09!2;UBERON:0001961!1.22e-09!2;UBERON:0001744!1.22e-09!2;UBERON:0000160!2.53e-08!43;UBERON:0003350!5.79e-08!9;UBERON:0004808!5.79e-08!9;UBERON:0001277!5.79e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.63e-20,15;UBERON:0001962,2.26e-13,2;UBERON:0001961,2.26e-13,2;UBERON:0001744,2.26e-13,2;UBERON:0004923,2.35e-12,24;UBERON:0001242,3.41e-12,13;UBERON:0001262,3.41e-12,13;UBERON:0004786,3.41e-12,13;UBERON:0000014,7.79e-12,5;UBERON:0001003,7.79e-12,5;UBERON:0002097,7.79e-12,5;UBERON:0002199,7.79e-12,5;UBERON:0007029,7.79e-12,5;UBERON:0007376,7.79e-12,5;UBERON:0002416,7.79e-12,5;UBERON:0007383,7.79e-12,5;UBERON:0003350,2.13e-11,9;UBERON:0004808,2.13e-11,9;UBERON:0001277,2.13e-11,9;UBERON:0000485,2.27e-09,11;UBERON:0002465,3.19e-09,3;UBERON:0003199,1.53e-07,1;UBERON:0000160,5.20e-07,31 | |||
|phase1_expression=0,6.2815573375085,5.0049916332849,0,0,1.6787927191189,2.10251376535973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23989391910769,2.2940928106717,6.31655160526522,5.1691439539089,8.61884930743556,0.190023419456374,0.756090389279792,9.5344119581781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,1.85115396664481,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48397627647332,0,0.482503399425247,2.626191568069,5.58079059133208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | |||
|short_description=p@chr4:104940113..104940131,+ | |||
}} |
Revision as of 03:19, 14 September 2013
Short description: | p@chr4:104940113..104940131, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:104940113..104940131, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.57e-20 | 3 |
brush border epithelial cell | 5.98e-17 | 6 |
gut absorptive cell | 5.98e-17 | 6 |
enterocyte | 5.98e-17 | 6 |
columnar/cuboidal epithelial cell | 1.42e-14 | 7 |
epithelial cell | 5.41e-12 | 25 |
intestinal epithelial cell | 2.13e-11 | 9 |
epithelial cell of alimentary canal | 2.13e-11 | 9 |
defensive cell | 4.89e-09 | 7 |
endo-epithelial cell | 6.35e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 4.63e-20 | 15 |
gut-associated lymphoid tissue | 2.26e-13 | 2 |
mucosa-associated lymphoid tissue | 2.26e-13 | 2 |
lymphoid tissue | 2.26e-13 | 2 |
organ component layer | 2.35e-12 | 24 |
intestinal mucosa | 3.41e-12 | 13 |
wall of intestine | 3.41e-12 | 13 |
gastrointestinal system mucosa | 3.41e-12 | 13 |
zone of skin | 7.79e-12 | 5 |
skin epidermis | 7.79e-12 | 5 |
skin of body | 7.79e-12 | 5 |
integument | 7.79e-12 | 5 |
surface | 7.79e-12 | 5 |
outer epithelium | 7.79e-12 | 5 |
integumental system | 7.79e-12 | 5 |
enveloping layer of ectoderm | 7.79e-12 | 5 |
epithelium of mucosa | 2.13e-11 | 9 |
gastrointestinal system epithelium | 2.13e-11 | 9 |
intestinal epithelium | 2.13e-11 | 9 |
simple columnar epithelium | 2.27e-09 | 11 |
lymphoid system | 3.19e-09 | 3 |
egg chamber | 1.53e-07 | 1 |
intestine | 5.20e-07 | 31 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.