FFCP PHASE1:Hg19::chr1:42194773..42194782,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2584|description=CAGE_peak_at_chr1:42194773..42194782,+|id=chr1:42194773..42194782,+|ontology_enrichment_celltype=CL:0002057!2.03e-62!42;CL:0000738!7.75e-60!140;CL:0000860!9.07e-58!45;CL:0002087!6.59e-57!119;CL:0000037!6.06e-49!172;CL:0000566!6.06e-49!172;CL:0002031!6.98e-49!124;CL:0000988!1.13e-45!182;CL:0002194!1.05e-44!63;CL:0000576!1.05e-44!63;CL:0000040!1.05e-44!63;CL:0000559!1.05e-44!63;CL:0000766!2.06e-44!76;CL:0002009!4.09e-43!65;CL:0002032!2.83e-42!165;CL:0000837!2.83e-42!165;CL:0000839!1.56e-39!70;CL:0000557!7.07e-39!71;CL:0000763!1.40e-29!112;CL:0000049!1.40e-29!112;CL:0000134!7.08e-18!358;CL:0002320!2.54e-17!365;CL:0000219!2.31e-15!390;CL:0000034!4.57e-14!444;CL:0000048!5.12e-13!430;CL:0000784!8.16e-13!3;CL:0000723!1.10e-12!436;CL:0000767!7.00e-12!3;CL:0000623!7.00e-12!3;CL:0000825!7.00e-12!3;CL:0000838!1.64e-11!52;CL:0000542!3.13e-11!53;CL:0000051!3.13e-11!53;CL:0002393!1.88e-10!9;CL:0002397!1.88e-10!9;CL:0000945!7.50e-08!24;CL:0000826!7.50e-08!24;CL:0000063!8.89e-07!578|ontology_enrichment_celltype_v019=CL:0000784;1.74e-34;3!CL:0000860;1.99e-19;33!CL:0002057;1.99e-19;33!CL:0002393;1.05e-17;6!CL:0002397;1.05e-17;6!CL:0000576;1.34e-16;48!CL:0000473;2.86e-15;39!CL:0000234;2.86e-15;39!CL:0000766;8.62e-13;69!CL:0000451;7.40e-10;10|ontology_enrichment_celltype_v019_2=CL:0000784,1.75e-34,3;CL:0000860,3.24e-30,42;CL:0002057,3.24e-30,42;CL:0000473,2.89e-26,48;CL:0000234,2.89e-26,48;CL:0002194,8.33e-25,59;CL:0000576,8.33e-25,59;CL:0000040,8.33e-25,59;CL:0000559,8.33e-25,59;CL:0002009,5.92e-24,61;CL:0000766,9.55e-24,72;CL:0000839,4.77e-22,66;CL:0000557,1.06e-21,67;CL:0000738,1.34e-18,136;CL:0000763,2.58e-15,108;CL:0000049,2.58e-15,108;CL:0000037,1.13e-14,168;CL:0002087,2.94e-14,115;CL:0000988,8.05e-14,177;CL:0002393,5.23e-12,9;CL:0002397,5.23e-12,9;CL:0002031,1.83e-11,120;CL:0000451,7.40e-10,10;CL:0002032,1.08e-09,161;CL:0000837,1.08e-09,161|ontology_enrichment_development_v019=CL:0002057;1.95e-19;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!3.76e-36!80;UBERON:0001474!4.11e-33!86;UBERON:0002390!5.02e-31!102;UBERON:0003061!5.02e-31!102;UBERON:0002193!1.51e-27!112;UBERON:0004765!4.37e-27!101;UBERON:0001434!4.37e-27!101;UBERON:0002405!7.11e-23!115;UBERON:0002384!1.46e-16!375;UBERON:0002204!1.97e-13!167;UBERON:0003081!1.68e-10!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.65e-19,76;UBERON:0001474,1.75e-17,82;UBERON:0002390,5.09e-17,98;UBERON:0003061,5.09e-17,98;UBERON:0004765,8.40e-16,90;UBERON:0002193,2.72e-15,108;UBERON:0002405,3.03e-15,93;UBERON:0001434,4.51e-14,100;UBERON:0002204,9.05e-08,167;UBERON:0003081,2.75e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.410502947249729,0.314843125254717,1.96682138424452,0.383829398097213,0.77408061658038,0,0,0,0,0,0,3.87796785972314,4.21143339687298,4.12320654360118,0,0,0,0,0,0,0.232429036905685,0.411167888021826,0,0.575384784644301,0,1.41889337933151,3.7922024881028,1.29096936716765,1.35426486594342,0,0,0.898893937780338,1.53041946185451,0.641858054152187,1.27867425159808,0.989553900560148,0.398927315243264,1.27867425159808,0.580418477257168,0.56738522469114,0.622822248995575,0,1.5644487552606,0.65156653411535,0,0.736555271975129,0.632924774881769,0,0.425208599930087,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,1.68152568894461,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62339686735876,2.85997455390064,5.20040501861391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.862510299438069,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50999940573032,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2584 | |||
|description=CAGE_peak_at_chr1:42194773..42194782,+ | |||
|id=chr1:42194773..42194782,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.03e-62!42;CL:0000738!7.75e-60!140;CL:0000860!9.07e-58!45;CL:0002087!6.59e-57!119;CL:0000037!6.06e-49!172;CL:0000566!6.06e-49!172;CL:0002031!6.98e-49!124;CL:0000988!1.13e-45!182;CL:0002194!1.05e-44!63;CL:0000576!1.05e-44!63;CL:0000040!1.05e-44!63;CL:0000559!1.05e-44!63;CL:0000766!2.06e-44!76;CL:0002009!4.09e-43!65;CL:0002032!2.83e-42!165;CL:0000837!2.83e-42!165;CL:0000839!1.56e-39!70;CL:0000557!7.07e-39!71;CL:0000763!1.40e-29!112;CL:0000049!1.40e-29!112;CL:0000134!7.08e-18!358;CL:0002320!2.54e-17!365;CL:0000219!2.31e-15!390;CL:0000034!4.57e-14!444;CL:0000048!5.12e-13!430;CL:0000784!8.16e-13!3;CL:0000723!1.10e-12!436;CL:0000767!7.00e-12!3;CL:0000623!7.00e-12!3;CL:0000825!7.00e-12!3;CL:0000838!1.64e-11!52;CL:0000542!3.13e-11!53;CL:0000051!3.13e-11!53;CL:0002393!1.88e-10!9;CL:0002397!1.88e-10!9;CL:0000945!7.50e-08!24;CL:0000826!7.50e-08!24;CL:0000063!8.89e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000784;1.74e-34;3!CL:0000860;1.99e-19;33!CL:0002057;1.99e-19;33!CL:0002393;1.05e-17;6!CL:0002397;1.05e-17;6!CL:0000576;1.34e-16;48!CL:0000473;2.86e-15;39!CL:0000234;2.86e-15;39!CL:0000766;8.62e-13;69!CL:0000451;7.40e-10;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,1.75e-34,3;CL:0000860,3.24e-30,42;CL:0002057,3.24e-30,42;CL:0000473,2.89e-26,48;CL:0000234,2.89e-26,48;CL:0002194,8.33e-25,59;CL:0000576,8.33e-25,59;CL:0000040,8.33e-25,59;CL:0000559,8.33e-25,59;CL:0002009,5.92e-24,61;CL:0000766,9.55e-24,72;CL:0000839,4.77e-22,66;CL:0000557,1.06e-21,67;CL:0000738,1.34e-18,136;CL:0000763,2.58e-15,108;CL:0000049,2.58e-15,108;CL:0000037,1.13e-14,168;CL:0002087,2.94e-14,115;CL:0000988,8.05e-14,177;CL:0002393,5.23e-12,9;CL:0002397,5.23e-12,9;CL:0002031,1.83e-11,120;CL:0000451,7.40e-10,10;CL:0002032,1.08e-09,161;CL:0000837,1.08e-09,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.95e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.76e-36!80;UBERON:0001474!4.11e-33!86;UBERON:0002390!5.02e-31!102;UBERON:0003061!5.02e-31!102;UBERON:0002193!1.51e-27!112;UBERON:0004765!4.37e-27!101;UBERON:0001434!4.37e-27!101;UBERON:0002405!7.11e-23!115;UBERON:0002384!1.46e-16!375;UBERON:0002204!1.97e-13!167;UBERON:0003081!1.68e-10!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.65e-19,76;UBERON:0001474,1.75e-17,82;UBERON:0002390,5.09e-17,98;UBERON:0003061,5.09e-17,98;UBERON:0004765,8.40e-16,90;UBERON:0002193,2.72e-15,108;UBERON:0002405,3.03e-15,93;UBERON:0001434,4.51e-14,100;UBERON:0002204,9.05e-08,167;UBERON:0003081,2.75e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.410502947249729,0.314843125254717,1.96682138424452,0.383829398097213,0.77408061658038,0,0,0,0,0,0,3.87796785972314,4.21143339687298,4.12320654360118,0,0,0,0,0,0,0.232429036905685,0.411167888021826,0,0.575384784644301,0,1.41889337933151,3.7922024881028,1.29096936716765,1.35426486594342,0,0,0.898893937780338,1.53041946185451,0.641858054152187,1.27867425159808,0.989553900560148,0.398927315243264,1.27867425159808,0.580418477257168,0.56738522469114,0.622822248995575,0,1.5644487552606,0.65156653411535,0,0.736555271975129,0.632924774881769,0,0.425208599930087,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,1.68152568894461,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62339686735876,2.85997455390064,5.20040501861391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.862510299438069,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50999940573032,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:42194773..42194782,+ | |||
}} |
Revision as of 05:45, 12 September 2013
Short description: | p@chr1:42194773..42194782, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:42194773..42194782, + |
Coexpression cluster: | C2584_Dendritic_CD14_Basophils_CD14CD16_Peripheral_CD34_granulocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 1.75e-34 | 3 |
classical monocyte | 3.24e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.24e-30 | 42 |
defensive cell | 2.89e-26 | 48 |
phagocyte | 2.89e-26 | 48 |
monopoietic cell | 8.33e-25 | 59 |
monocyte | 8.33e-25 | 59 |
monoblast | 8.33e-25 | 59 |
promonocyte | 8.33e-25 | 59 |
macrophage dendritic cell progenitor | 5.92e-24 | 61 |
myeloid leukocyte | 9.55e-24 | 72 |
myeloid lineage restricted progenitor cell | 4.77e-22 | 66 |
granulocyte monocyte progenitor cell | 1.06e-21 | 67 |
leukocyte | 1.34e-18 | 136 |
myeloid cell | 2.58e-15 | 108 |
common myeloid progenitor | 2.58e-15 | 108 |
hematopoietic stem cell | 1.13e-14 | 168 |
nongranular leukocyte | 2.94e-14 | 115 |
hematopoietic cell | 8.05e-14 | 177 |
intermediate monocyte | 5.23e-12 | 9 |
CD14-positive, CD16-positive monocyte | 5.23e-12 | 9 |
hematopoietic lineage restricted progenitor cell | 1.83e-11 | 120 |
dendritic cell | 7.40e-10 | 10 |
hematopoietic oligopotent progenitor cell | 1.08e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.08e-09 | 161 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.65e-19 | 76 |
bone element | 1.75e-17 | 82 |
hematopoietic system | 5.09e-17 | 98 |
blood island | 5.09e-17 | 98 |
skeletal element | 8.40e-16 | 90 |
hemolymphoid system | 2.72e-15 | 108 |
immune system | 3.03e-15 | 93 |
skeletal system | 4.51e-14 | 100 |
musculoskeletal system | 9.05e-08 | 167 |
lateral plate mesoderm | 2.75e-07 | 203 |
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