FFCP PHASE1:Hg19::chr1:207226313..207226335,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55432|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25035|TSSclassifier=S|UniProt=Q5VVQ6|association_with_transcript=0bp_to_ENST00000367084,uc001hff.1_5end|description=CAGE_peak_4_at_YOD1_5end|id=chr1:207226313..207226335,-|ontology_enrichment_celltype=CL:0000066!6.11e-09!254|ontology_enrichment_celltype_v019=CL:0002591;4.84e-10;1|ontology_enrichment_celltype_v019_2=CL:0002591,7.55e-10,1|ontology_enrichment_development_v019=UBERON:0008947;2.37e-07;29|ontology_enrichment_disease=DOID:0050687!1.14e-18!143;DOID:305!2.15e-16!106;DOID:162!6.90e-15!235;DOID:14566!1.36e-14!239|ontology_enrichment_disease_v019=DOID:1036;2.37e-10;8!DOID:8692;4.23e-07;31|ontology_enrichment_disease_v019_2=DOID:1036,2.89e-10,8;DOID:8692,6.92e-07,31|ontology_enrichment_uberon=UBERON:0001049!1.87e-11!57;UBERON:0005068!1.87e-11!57;UBERON:0006241!1.87e-11!57;UBERON:0007135!1.87e-11!57;UBERON:0000073!3.08e-11!94;UBERON:0001016!3.08e-11!94;UBERON:0005743!4.51e-11!86;UBERON:0002616!2.32e-10!59;UBERON:0001017!2.75e-10!82;UBERON:0000955!2.77e-10!69;UBERON:0006238!2.77e-10!69;UBERON:0002346!2.99e-09!90;UBERON:0001737!3.05e-09!9;UBERON:0000924!4.78e-09!173;UBERON:0006601!4.78e-09!173;UBERON:0002780!1.61e-08!41;UBERON:0001890!1.61e-08!41;UBERON:0006240!1.61e-08!41;UBERON:0003075!1.63e-08!86;UBERON:0007284!1.63e-08!86;UBERON:0004121!2.11e-08!169;UBERON:0003080!4.15e-08!42;UBERON:0001893!1.20e-07!34;UBERON:0000064!1.61e-07!219;UBERON:0002020!2.87e-07!34;UBERON:0003528!2.87e-07!34;UBERON:0002791!3.94e-07!33;UBERON:0000033!6.57e-07!123|ontology_enrichment_uberon_v019=UBERON:0001737;5.70e-24;9!UBERON:0001557;5.70e-24;9!UBERON:0002336;4.84e-10;1!UBERON:0011215;4.84e-10;1!UBERON:0001018;4.84e-10;1!UBERON:0002473;4.84e-10;1!UBERON:0005340;4.84e-10;1!UBERON:0003544;4.84e-10;1!UBERON:0005970;4.84e-10;1!UBERON:0002316;4.84e-10;1!UBERON:0001020;4.84e-10;1!UBERON:0002437;4.84e-10;1!UBERON:0000072;2.21e-08;37|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.34e-24,9;UBERON:0001557,6.37e-16,19;UBERON:0002336,2.84e-10,1;UBERON:0011215,2.84e-10,1;UBERON:0001018,2.84e-10,1;UBERON:0002473,2.84e-10,1;UBERON:0005340,2.84e-10,1;UBERON:0003544,2.84e-10,1;UBERON:0005970,2.84e-10,1;UBERON:0002316,2.84e-10,1;UBERON:0001020,2.84e-10,1;UBERON:0002437,2.84e-10,1;UBERON:0000072,2.49e-08,47;UBERON:0008947,7.84e-08,38;UBERON:0003258,7.84e-08,38;UBERON:0000065,3.76e-07,54|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,0,0,0.261185628199839,0.245733936501509,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0.273748850145768,0,0.0764134057479513,0.0821005894499457,0.314843125254717,0.393364276848904,0,0.154816123316076,0,0.30120591877825,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0.486634870302636,0.0945348171640679,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0.206651562351531,0,0,0,0,0.336672227908132,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0.169560592310488,0,0.818238361772504,0,0.609868530647977,0.265059536642971,0.464775771478074,0.414644220061482,0.252320850875628,0,0,0,0,0,0,0.709840800239063,1.01150814046861,1.20505514941741,0.882351781859152,0.435758888184812,1.42362371466658,0.808987848960987,1.76599318612811,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0.441463099414651,0.245976877086227,0,0.109750285408626,1.1240175325762,0.100528972411631,0,0.325808305310325,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0.264145302039678,0.414656231081544,0.288239906833923,0.12624243342638,0.126995788584338,0,1.17217447210047,0,0.308482478109971,0.300343057843917,0.285826432630578,0.224262168690721,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0,0,0.542621605391443,0.823240336780769,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0.909382714338778,0,0,0,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.0920809889358963,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0.256450125116389,0.656029291399411,0,0,0.183138929636687,0.330037999682352,0,0.650060246036521,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0,0,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.190630193923825,0.255897791311334,0,0,0,0.359744915166629,0,0.117812402345686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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55432 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25035 | |||
|TSSclassifier=S | |||
|UniProt=Q5VVQ6 | |||
|association_with_transcript=0bp_to_ENST00000367084,uc001hff.1_5end | |||
|description=CAGE_peak_4_at_YOD1_5end | |||
|id=chr1:207226313..207226335,- | |||
|ontology_enrichment_celltype=CL:0000066!6.11e-09!254 | |||
|ontology_enrichment_celltype_v019=CL:0002591;4.84e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,7.55e-10,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.37e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!1.14e-18!143;DOID:305!2.15e-16!106;DOID:162!6.90e-15!235;DOID:14566!1.36e-14!239 | |||
|ontology_enrichment_disease_v019=DOID:1036;2.37e-10;8!DOID:8692;4.23e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,2.89e-10,8;DOID:8692,6.92e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.87e-11!57;UBERON:0005068!1.87e-11!57;UBERON:0006241!1.87e-11!57;UBERON:0007135!1.87e-11!57;UBERON:0000073!3.08e-11!94;UBERON:0001016!3.08e-11!94;UBERON:0005743!4.51e-11!86;UBERON:0002616!2.32e-10!59;UBERON:0001017!2.75e-10!82;UBERON:0000955!2.77e-10!69;UBERON:0006238!2.77e-10!69;UBERON:0002346!2.99e-09!90;UBERON:0001737!3.05e-09!9;UBERON:0000924!4.78e-09!173;UBERON:0006601!4.78e-09!173;UBERON:0002780!1.61e-08!41;UBERON:0001890!1.61e-08!41;UBERON:0006240!1.61e-08!41;UBERON:0003075!1.63e-08!86;UBERON:0007284!1.63e-08!86;UBERON:0004121!2.11e-08!169;UBERON:0003080!4.15e-08!42;UBERON:0001893!1.20e-07!34;UBERON:0000064!1.61e-07!219;UBERON:0002020!2.87e-07!34;UBERON:0003528!2.87e-07!34;UBERON:0002791!3.94e-07!33;UBERON:0000033!6.57e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.70e-24;9!UBERON:0001557;5.70e-24;9!UBERON:0002336;4.84e-10;1!UBERON:0011215;4.84e-10;1!UBERON:0001018;4.84e-10;1!UBERON:0002473;4.84e-10;1!UBERON:0005340;4.84e-10;1!UBERON:0003544;4.84e-10;1!UBERON:0005970;4.84e-10;1!UBERON:0002316;4.84e-10;1!UBERON:0001020;4.84e-10;1!UBERON:0002437;4.84e-10;1!UBERON:0000072;2.21e-08;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.34e-24,9;UBERON:0001557,6.37e-16,19;UBERON:0002336,2.84e-10,1;UBERON:0011215,2.84e-10,1;UBERON:0001018,2.84e-10,1;UBERON:0002473,2.84e-10,1;UBERON:0005340,2.84e-10,1;UBERON:0003544,2.84e-10,1;UBERON:0005970,2.84e-10,1;UBERON:0002316,2.84e-10,1;UBERON:0001020,2.84e-10,1;UBERON:0002437,2.84e-10,1;UBERON:0000072,2.49e-08,47;UBERON:0008947,7.84e-08,38;UBERON:0003258,7.84e-08,38;UBERON:0000065,3.76e-07,54 | |||
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| |||
|short_description=p4@YOD1 | |||
}} |
Revision as of 03:13, 12 September 2013
Short description: | p4@YOD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_YOD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367084, uc001hff.1_5end |
EntrezGene: | YOD1 |
HGNC: | 25035 |
UniProt: | Q5VVQ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 7.55e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.34e-24 | 9 |
upper respiratory tract | 6.37e-16 | 19 |
corpus callosum | 2.84e-10 | 1 |
central nervous system cell part cluster | 2.84e-10 | 1 |
axon tract | 2.84e-10 | 1 |
intercerebral commissure | 2.84e-10 | 1 |
dorsal telencephalic commissure | 2.84e-10 | 1 |
brain white matter | 2.84e-10 | 1 |
brain commissure | 2.84e-10 | 1 |
white matter | 2.84e-10 | 1 |
nervous system commissure | 2.84e-10 | 1 |
cerebral hemisphere white matter | 2.84e-10 | 1 |
segment of respiratory tract | 2.49e-08 | 47 |
respiratory primordium | 7.84e-08 | 38 |
endoderm of foregut | 7.84e-08 | 38 |
respiratory tract | 3.76e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 2.89e-10 | 8 |
myeloid leukemia | 6.92e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.