FFCP PHASE1:Hg19::chr10:50818343..50818362,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6572|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10936|TSSclassifier=S|UniProt=Q16572|association_with_transcript=0bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end|coexpression_cluster_id=C1313|description=CAGE_peak_2_at_SLC18A3_5end|id=chr10:50818343..50818362,+|ontology_enrichment_celltype=CL:0000349!1.13e-14!3;CL:0002577!1.13e-14!3;CL:0002536!1.62e-09!2;CL:0002537!4.36e-09!5|ontology_enrichment_celltype_v019=CL:0002577;3.66e-43;3!CL:0000349;3.13e-36;19!CL:0002537;1.34e-26;5!CL:0002097;2.57e-08;2|ontology_enrichment_celltype_v019_2=CL:0002577,3.41e-43,3;CL:0000349,3.05e-36,19;CL:0002537,1.28e-26,5;CL:0002097,2.87e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:171!1.67e-26!10;DOID:169!1.14e-11!6;DOID:3095!2.40e-11!22;DOID:2994!2.40e-11!22|ontology_enrichment_disease_v019=DOID:171;2.21e-13;10|ontology_enrichment_disease_v019_2=DOID:171,2.07e-13,10|ontology_enrichment_uberon=UBERON:0005631!6.01e-25!14;UBERON:0000158!6.01e-25!14;UBERON:0000369!5.82e-17!4;UBERON:0002435!5.82e-17!4;UBERON:0000204!5.82e-17!4;UBERON:0010082!5.82e-17!4;UBERON:0002308!1.83e-16!9;UBERON:0000125!1.83e-16!9;UBERON:0000305!4.38e-16!7;UBERON:0004871!4.88e-14!8;UBERON:0000013!5.54e-14!5;UBERON:0002410!5.54e-14!5;UBERON:0000478!7.67e-14!24;UBERON:0005383!2.45e-13!3;UBERON:0005382!2.45e-13!3;UBERON:0000924!1.58e-11!173;UBERON:0006601!1.58e-11!173;UBERON:0001987!4.08e-11!4;UBERON:0004340!4.08e-11!4;UBERON:0002346!5.41e-11!90;UBERON:0003124!8.24e-11!7;UBERON:0002148!9.21e-10!2;UBERON:0009662!9.21e-10!2;UBERON:0009663!9.50e-10!7;UBERON:0001873!1.10e-09!2;UBERON:0010122!1.10e-09!2;UBERON:0002298!8.28e-09!8;UBERON:0000064!4.20e-08!219;UBERON:0004121!7.36e-08!169;UBERON:0000010!8.37e-08!8;UBERON:0002420!1.34e-07!9;UBERON:0007245!1.34e-07!9;UBERON:0010009!1.34e-07!9;UBERON:0010011!1.34e-07!9;UBERON:0000454!1.34e-07!9;UBERON:0000073!1.36e-07!94;UBERON:0001016!1.36e-07!94;UBERON:0003076!5.78e-07!15;UBERON:0003057!5.78e-07!15;UBERON:0000988!9.02e-07!3;UBERON:0006331!9.02e-07!3|ontology_enrichment_uberon_v019=UBERON:0001987;1.39e-32;4!UBERON:0000478;1.28e-28;24!UBERON:0005631;3.34e-23;10!UBERON:0000158;3.34e-23;10!UBERON:0000305;3.31e-19;7!UBERON:0002346;2.96e-15;4!UBERON:0000923;2.96e-15;4!UBERON:0010316;2.96e-15;4!UBERON:0005291;2.96e-15;4!UBERON:0002050;2.12e-12;5!UBERON:0005423;2.12e-12;5|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.81e-49,14;UBERON:0000158,2.81e-49,14;UBERON:0001987,1.32e-32,4;UBERON:0004340,1.32e-32,4;UBERON:0003124,1.34e-32,7;UBERON:0000478,1.26e-28,24;UBERON:0000305,3.21e-19,7;UBERON:0004871,6.66e-17,8;UBERON:0004923,4.01e-10,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94065842880137,1.66435439510497,33.2629322662648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4147132063599,5.04839957415486,18.7368028280532,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.583209226766509,0.694499979733169,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34833881285112,0,0,0,12.0391686648394,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0.215649622793364,1.72992536041486,0.218419276384028,0.169732529954025,4.67664824223702,4.58562327758308,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,1.82631744101899,1.29556554731173,0,0.285906176706625,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6572 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |||
|TSSclassifier=S | |||
|UniProt=Q16572 | |||
|association_with_transcript=0bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |||
|coexpression_cluster_id=C1313 | |||
|description=CAGE_peak_2_at_SLC18A3_5end | |||
|id=chr10:50818343..50818362,+ | |||
|ontology_enrichment_celltype=CL:0000349!1.13e-14!3;CL:0002577!1.13e-14!3;CL:0002536!1.62e-09!2;CL:0002537!4.36e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002577;3.66e-43;3!CL:0000349;3.13e-36;19!CL:0002537;1.34e-26;5!CL:0002097;2.57e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,3.41e-43,3;CL:0000349,3.05e-36,19;CL:0002537,1.28e-26,5;CL:0002097,2.87e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!1.67e-26!10;DOID:169!1.14e-11!6;DOID:3095!2.40e-11!22;DOID:2994!2.40e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:171;2.21e-13;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.07e-13,10 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.01e-25!14;UBERON:0000158!6.01e-25!14;UBERON:0000369!5.82e-17!4;UBERON:0002435!5.82e-17!4;UBERON:0000204!5.82e-17!4;UBERON:0010082!5.82e-17!4;UBERON:0002308!1.83e-16!9;UBERON:0000125!1.83e-16!9;UBERON:0000305!4.38e-16!7;UBERON:0004871!4.88e-14!8;UBERON:0000013!5.54e-14!5;UBERON:0002410!5.54e-14!5;UBERON:0000478!7.67e-14!24;UBERON:0005383!2.45e-13!3;UBERON:0005382!2.45e-13!3;UBERON:0000924!1.58e-11!173;UBERON:0006601!1.58e-11!173;UBERON:0001987!4.08e-11!4;UBERON:0004340!4.08e-11!4;UBERON:0002346!5.41e-11!90;UBERON:0003124!8.24e-11!7;UBERON:0002148!9.21e-10!2;UBERON:0009662!9.21e-10!2;UBERON:0009663!9.50e-10!7;UBERON:0001873!1.10e-09!2;UBERON:0010122!1.10e-09!2;UBERON:0002298!8.28e-09!8;UBERON:0000064!4.20e-08!219;UBERON:0004121!7.36e-08!169;UBERON:0000010!8.37e-08!8;UBERON:0002420!1.34e-07!9;UBERON:0007245!1.34e-07!9;UBERON:0010009!1.34e-07!9;UBERON:0010011!1.34e-07!9;UBERON:0000454!1.34e-07!9;UBERON:0000073!1.36e-07!94;UBERON:0001016!1.36e-07!94;UBERON:0003076!5.78e-07!15;UBERON:0003057!5.78e-07!15;UBERON:0000988!9.02e-07!3;UBERON:0006331!9.02e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;1.39e-32;4!UBERON:0000478;1.28e-28;24!UBERON:0005631;3.34e-23;10!UBERON:0000158;3.34e-23;10!UBERON:0000305;3.31e-19;7!UBERON:0002346;2.96e-15;4!UBERON:0000923;2.96e-15;4!UBERON:0010316;2.96e-15;4!UBERON:0005291;2.96e-15;4!UBERON:0002050;2.12e-12;5!UBERON:0005423;2.12e-12;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.81e-49,14;UBERON:0000158,2.81e-49,14;UBERON:0001987,1.32e-32,4;UBERON:0004340,1.32e-32,4;UBERON:0003124,1.34e-32,7;UBERON:0000478,1.26e-28,24;UBERON:0000305,3.21e-19,7;UBERON:0004871,6.66e-17,8;UBERON:0004923,4.01e-10,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94065842880137,1.66435439510497,33.2629322662648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4147132063599,5.04839957415486,18.7368028280532,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.583209226766509,0.694499979733169,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34833881285112,0,0,0,12.0391686648394,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0.215649622793364,1.72992536041486,0.218419276384028,0.169732529954025,4.67664824223702,4.58562327758308,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,1.82631744101899,1.29556554731173,0,0.285906176706625,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p2@SLC18A3 | |||
}} |
Revision as of 13:35, 10 September 2013
Short description: | p2@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | 0bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 3.41e-43 | 3 |
extraembryonic cell | 3.05e-36 | 19 |
amnion mesenchymal stem cell | 1.28e-26 | 5 |
cortical cell of adrenal gland | 2.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.81e-49 | 14 |
membranous layer | 2.81e-49 | 14 |
placenta | 1.32e-32 | 4 |
allantois | 1.32e-32 | 4 |
chorion | 1.34e-32 | 7 |
extraembryonic structure | 1.26e-28 | 24 |
amnion | 3.21e-19 | 7 |
somatic layer of lateral plate mesoderm | 6.66e-17 | 8 |
organ component layer | 4.01e-10 | 66 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.07e-13 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.