FFCP PHASE1:Hg19::chr15:32976571..32976607,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6447|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10816|TSSclassifier=S|UniProt=|association_with_transcript=-9bp_to_ENST00000498607_5end|coexpression_cluster_id=C2329|description=CAGE_peak_3_at_SCG5_5end|id=chr15:32976571..32976607,+|ontology_enrichment_celltype=CL:0000055!5.45e-22!180;CL:0002371!1.35e-13!591;CL:0000057!1.39e-13!75;CL:0000144!5.24e-13!625;CL:0000548!1.85e-12!679;CL:0000004!1.85e-12!679;CL:0000255!1.85e-12!679;CL:0000012!4.92e-12!682;CL:0002620!6.71e-11!23;CL:0000359!1.53e-10!32;CL:0000723!2.06e-08!436;CL:0002334!3.88e-08!12;CL:0000192!5.14e-08!42;CL:0000514!5.14e-08!42;CL:0000220!5.67e-08!246;CL:0000680!6.46e-08!57;CL:0000056!6.46e-08!57;CL:0000355!6.46e-08!57;CL:0000003!8.50e-08!722;CL:0002321!1.10e-07!248;CL:0000034!1.10e-07!444;CL:0000048!1.14e-07!430;CL:0002539!1.68e-07!10;CL:0000187!6.93e-07!54|ontology_enrichment_celltype_v019=CL:0002620;4.88e-12;23!CL:0002539;3.56e-11;10!CL:0002334;4.07e-10;12!CL:0000359;1.18e-09;32!CL:0002159;9.60e-08;14!CL:0002570;8.33e-07;8|ontology_enrichment_celltype_v019_2=CL:0000057,1.85e-15,76;CL:0002620,4.93e-12,23;CL:0002539,3.78e-11,10;CL:0002334,3.98e-10,12;CL:0000359,4.18e-10,32;CL:0000723,3.53e-09,433;CL:0000034,1.62e-08,441;CL:0000048,2.45e-08,427;CL:0002159,7.53e-08,14|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!1.93e-07!14|ontology_enrichment_disease_v019=DOID:2394;4.54e-10;14!DOID:17;3.19e-07;5!DOID:450;3.19e-07;5!DOID:66;3.19e-07;5!DOID:423;3.19e-07;5!DOID:0080000;3.19e-07;5!DOID:11722;3.19e-07;5|ontology_enrichment_disease_v019_2=DOID:2394,4.57e-10,14;DOID:17,3.37e-07,5;DOID:450,3.37e-07,5;DOID:66,3.37e-07,5;DOID:423,3.37e-07,5;DOID:0080000,3.37e-07,5;DOID:11722,3.37e-07,5|ontology_enrichment_uberon=UBERON:0002097!1.40e-14!40;UBERON:0002199!1.77e-14!45;UBERON:0002416!1.77e-14!45;UBERON:0000486!2.46e-11!82;UBERON:0000914!4.37e-10!83;UBERON:0002329!4.37e-10!83;UBERON:0003077!4.37e-10!83;UBERON:0003059!4.37e-10!83;UBERON:0007282!4.37e-10!83;UBERON:0009618!4.37e-10!83;UBERON:0007285!4.37e-10!83;UBERON:0003102!4.07e-09!95;UBERON:0004290!5.82e-09!70;UBERON:0001637!1.92e-08!42;UBERON:0003509!1.92e-08!42;UBERON:0004572!1.92e-08!42;UBERON:0004237!1.68e-07!10;UBERON:0004695!1.68e-07!10;UBERON:0002111!1.68e-07!10;UBERON:0004178!1.68e-07!10;UBERON:0004573!1.98e-07!33;UBERON:0004571!1.98e-07!33;UBERON:0001134!3.09e-07!61;UBERON:0002036!3.09e-07!61;UBERON:0003082!3.09e-07!61;UBERON:0001981!5.79e-07!60;UBERON:0007500!5.79e-07!60;UBERON:0004537!5.79e-07!60;UBERON:0006965!5.79e-07!60;UBERON:0004872!6.30e-07!84;UBERON:0005256!7.38e-07!143|ontology_enrichment_uberon_v019=UBERON:0002097;3.79e-13;41!UBERON:0004237;3.56e-11;10!UBERON:0004695;3.56e-11;10!UBERON:0002111;3.56e-11;10!UBERON:0004178;3.56e-11;10!UBERON:0002199;3.70e-11;46!UBERON:0002416;3.70e-11;46!UBERON:0003102;1.78e-08;50!UBERON:0004573;8.85e-08;33!UBERON:0004571;8.85e-08;33!UBERON:0000947;3.09e-07;21!UBERON:0010191;3.09e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.20e-17,41;UBERON:0002199,1.37e-16,46;UBERON:0002416,1.37e-16,46;UBERON:0004237,3.78e-11,10;UBERON:0004695,3.78e-11,10;UBERON:0002111,3.78e-11,10;UBERON:0004178,3.78e-11,10;UBERON:0003102,4.02e-10,99;UBERON:0001637,4.72e-10,42;UBERON:0003509,4.72e-10,42;UBERON:0004572,4.72e-10,42;UBERON:0004573,1.51e-08,33;UBERON:0004571,1.51e-08,33;UBERON:0000947,3.56e-07,21;UBERON:0010191,3.56e-07,21|phase1_expression=2.54349730978779,2.5692062866918,0.704772020479856,1.0007329835313,0.446961094427288,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0,0,40.3395087871065,37.9697552655105,48.2004659655666,41.4742878971931,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0.822335776043652,1.85823822537062,0,0.256160706529101,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,1.00267582127178,0.434539556882471,18.2915767821753,6.32625331393427,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0.649094787309367,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,2.98183171017191,3.16576279161449,18.0076485905978,1.14734648299525,0.354668382198357,0.560677600142307,6.4049397437823,24.666754841716,0.311211035399766,0.942974704487816,0,0,0,0,0,0.570471821544449,0.149448680551801,0.704606991862589,1.13311061057692,0.280901613404497,0,0,0.413303124703062,0,0.494533858557114,0,0,0.168336113954066,0,0,1.31693286264251,1.5324389789951,1.50238058906597,1.47461838108027,10.0458195985763,11.3185416073841,12.080118366095,6.60200411385685,7.4197821051676,5.41045134095821,8.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6447 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10816 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000498607_5end | |||
|coexpression_cluster_id=C2329 | |||
|description=CAGE_peak_3_at_SCG5_5end | |||
|id=chr15:32976571..32976607,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.45e-22!180;CL:0002371!1.35e-13!591;CL:0000057!1.39e-13!75;CL:0000144!5.24e-13!625;CL:0000548!1.85e-12!679;CL:0000004!1.85e-12!679;CL:0000255!1.85e-12!679;CL:0000012!4.92e-12!682;CL:0002620!6.71e-11!23;CL:0000359!1.53e-10!32;CL:0000723!2.06e-08!436;CL:0002334!3.88e-08!12;CL:0000192!5.14e-08!42;CL:0000514!5.14e-08!42;CL:0000220!5.67e-08!246;CL:0000680!6.46e-08!57;CL:0000056!6.46e-08!57;CL:0000355!6.46e-08!57;CL:0000003!8.50e-08!722;CL:0002321!1.10e-07!248;CL:0000034!1.10e-07!444;CL:0000048!1.14e-07!430;CL:0002539!1.68e-07!10;CL:0000187!6.93e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.88e-12;23!CL:0002539;3.56e-11;10!CL:0002334;4.07e-10;12!CL:0000359;1.18e-09;32!CL:0002159;9.60e-08;14!CL:0002570;8.33e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.85e-15,76;CL:0002620,4.93e-12,23;CL:0002539,3.78e-11,10;CL:0002334,3.98e-10,12;CL:0000359,4.18e-10,32;CL:0000723,3.53e-09,433;CL:0000034,1.62e-08,441;CL:0000048,2.45e-08,427;CL:0002159,7.53e-08,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.93e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.54e-10;14!DOID:17;3.19e-07;5!DOID:450;3.19e-07;5!DOID:66;3.19e-07;5!DOID:423;3.19e-07;5!DOID:0080000;3.19e-07;5!DOID:11722;3.19e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.57e-10,14;DOID:17,3.37e-07,5;DOID:450,3.37e-07,5;DOID:66,3.37e-07,5;DOID:423,3.37e-07,5;DOID:0080000,3.37e-07,5;DOID:11722,3.37e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.40e-14!40;UBERON:0002199!1.77e-14!45;UBERON:0002416!1.77e-14!45;UBERON:0000486!2.46e-11!82;UBERON:0000914!4.37e-10!83;UBERON:0002329!4.37e-10!83;UBERON:0003077!4.37e-10!83;UBERON:0003059!4.37e-10!83;UBERON:0007282!4.37e-10!83;UBERON:0009618!4.37e-10!83;UBERON:0007285!4.37e-10!83;UBERON:0003102!4.07e-09!95;UBERON:0004290!5.82e-09!70;UBERON:0001637!1.92e-08!42;UBERON:0003509!1.92e-08!42;UBERON:0004572!1.92e-08!42;UBERON:0004237!1.68e-07!10;UBERON:0004695!1.68e-07!10;UBERON:0002111!1.68e-07!10;UBERON:0004178!1.68e-07!10;UBERON:0004573!1.98e-07!33;UBERON:0004571!1.98e-07!33;UBERON:0001134!3.09e-07!61;UBERON:0002036!3.09e-07!61;UBERON:0003082!3.09e-07!61;UBERON:0001981!5.79e-07!60;UBERON:0007500!5.79e-07!60;UBERON:0004537!5.79e-07!60;UBERON:0006965!5.79e-07!60;UBERON:0004872!6.30e-07!84;UBERON:0005256!7.38e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.79e-13;41!UBERON:0004237;3.56e-11;10!UBERON:0004695;3.56e-11;10!UBERON:0002111;3.56e-11;10!UBERON:0004178;3.56e-11;10!UBERON:0002199;3.70e-11;46!UBERON:0002416;3.70e-11;46!UBERON:0003102;1.78e-08;50!UBERON:0004573;8.85e-08;33!UBERON:0004571;8.85e-08;33!UBERON:0000947;3.09e-07;21!UBERON:0010191;3.09e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.20e-17,41;UBERON:0002199,1.37e-16,46;UBERON:0002416,1.37e-16,46;UBERON:0004237,3.78e-11,10;UBERON:0004695,3.78e-11,10;UBERON:0002111,3.78e-11,10;UBERON:0004178,3.78e-11,10;UBERON:0003102,4.02e-10,99;UBERON:0001637,4.72e-10,42;UBERON:0003509,4.72e-10,42;UBERON:0004572,4.72e-10,42;UBERON:0004573,1.51e-08,33;UBERON:0004571,1.51e-08,33;UBERON:0000947,3.56e-07,21;UBERON:0010191,3.56e-07,21 | |||
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| |||
|short_description=p3@SCG5 | |||
}} |
Revision as of 06:34, 11 September 2013
Short description: | p3@SCG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SCG5_5end |
Coexpression cluster: | C2329_cholangiocellular_gall_pagetoid_mesenchymal_bone_Macrophage_Aortic |
Association with transcript: | -9bp_to_ENST00000498607_5end |
EntrezGene: | SCG5 |
HGNC: | 10816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.85e-15 | 76 |
skin fibroblast | 4.93e-12 | 23 |
aortic smooth muscle cell | 3.78e-11 | 10 |
preadipocyte | 3.98e-10 | 12 |
vascular associated smooth muscle cell | 4.18e-10 | 32 |
somatic stem cell | 3.53e-09 | 433 |
stem cell | 1.62e-08 | 441 |
multi fate stem cell | 2.45e-08 | 427 |
general ecto-epithelial cell | 7.53e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
skin of body | 8.20e-17 | 41 |
integument | 1.37e-16 | 46 |
integumental system | 1.37e-16 | 46 |
blood vessel smooth muscle | 3.78e-11 | 10 |
arterial system smooth muscle | 3.78e-11 | 10 |
artery smooth muscle tissue | 3.78e-11 | 10 |
aorta smooth muscle tissue | 3.78e-11 | 10 |
surface structure | 4.02e-10 | 99 |
artery | 4.72e-10 | 42 |
arterial blood vessel | 4.72e-10 | 42 |
arterial system | 4.72e-10 | 42 |
systemic artery | 1.51e-08 | 33 |
systemic arterial system | 1.51e-08 | 33 |
aorta | 3.56e-07 | 21 |
aortic system | 3.56e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.57e-10 | 14 |
musculoskeletal system disease | 3.37e-07 | 5 |
myotonic disease | 3.37e-07 | 5 |
muscle tissue disease | 3.37e-07 | 5 |
myopathy | 3.37e-07 | 5 |
muscular disease | 3.37e-07 | 5 |
myotonic dystrophy | 3.37e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.