FFCP PHASE1:Hg19::chr2:238322983..238323006,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1293|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2213|TSSclassifier=S|UniProt=P12111|association_with_transcript=11bp_to_ENST00000295550_5end|coexpression_cluster_id=C332|description=CAGE_peak_4_at_COL6A3_5end|id=chr2:238322983..238323006,-|ontology_enrichment_celltype=CL:0000055!2.47e-44!180;CL:0000057!3.63e-31!75;CL:0000183!7.42e-20!59;CL:0000680!2.45e-19!57;CL:0000056!2.45e-19!57;CL:0000355!2.45e-19!57;CL:0000187!4.84e-19!54;CL:0000048!2.58e-15!430;CL:0000393!4.44e-15!60;CL:0000211!4.44e-15!60;CL:0002620!2.84e-14!23;CL:0000723!3.48e-14!436;CL:0000192!3.45e-13!42;CL:0000514!3.45e-13!42;CL:0000034!9.25e-13!444;CL:0000359!3.21e-09!32;CL:0002494!7.56e-08!16;CL:0002570!5.17e-07!8|ontology_enrichment_celltype_v019=CL:0002620;9.11e-16;23!CL:0000057;2.04e-14;73!CL:0000187;7.00e-12;55!CL:0000134;8.83e-11;55!CL:0002320;1.74e-10;188!CL:0000723;1.85e-10;61!CL:0000192;3.49e-10;43!CL:0000048;7.83e-10;58!CL:0000393;1.09e-09;61!CL:0000211;1.09e-09;61!CL:0000359;6.95e-09;32!CL:0002494;1.36e-08;16!CL:0002570;1.23e-07;8!CL:0000034;2.15e-07;69!CL:0002334;7.87e-07;12|ontology_enrichment_celltype_v019_2=CL:0000057,4.74e-36,76;CL:0000048,7.21e-22,427;CL:0000187,3.70e-21,55;CL:0000680,6.96e-21,58;CL:0000056,6.96e-21,58;CL:0000355,6.96e-21,58;CL:0000723,1.14e-20,433;CL:0000034,3.89e-19,441;CL:0000393,3.13e-17,61;CL:0000211,3.13e-17,61;CL:0002620,8.82e-16,23;CL:0000192,1.27e-14,43;CL:0000514,1.27e-14,43;CL:0002320,1.23e-10,361;CL:0000359,1.44e-09,32;CL:0000134,3.87e-09,354;CL:0002494,1.35e-08,16;CL:0002570,1.16e-07,8;CL:0000219,2.23e-07,386;CL:0002334,7.24e-07,12|ontology_enrichment_development_v019=CL:0000355;4.30e-12;58!CL:0000514;3.49e-10;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;5.09e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,4.22e-07,14|ontology_enrichment_uberon=UBERON:0000914!4.22e-23!83;UBERON:0002329!4.22e-23!83;UBERON:0003077!4.22e-23!83;UBERON:0003059!4.22e-23!83;UBERON:0007282!4.22e-23!83;UBERON:0009618!4.22e-23!83;UBERON:0007285!4.22e-23!83;UBERON:0004290!9.43e-23!70;UBERON:0002385!1.40e-19!63;UBERON:0001015!1.40e-19!63;UBERON:0000383!1.40e-19!63;UBERON:0001134!6.02e-19!61;UBERON:0002036!6.02e-19!61;UBERON:0003082!6.02e-19!61;UBERON:0005256!1.02e-17!143;UBERON:0000486!3.67e-17!82;UBERON:0003102!2.40e-12!95;UBERON:0002199!7.87e-12!45;UBERON:0002416!7.87e-12!45;UBERON:0002100!8.01e-12!216;UBERON:0000475!2.71e-11!365;UBERON:0007100!6.84e-10!27;UBERON:0004872!7.05e-10!84;UBERON:0002097!1.04e-09!40;UBERON:0000948!1.80e-09!24;UBERON:0005498!1.80e-09!24;UBERON:0004140!1.80e-09!24;UBERON:0009881!1.80e-09!24;UBERON:0004141!1.80e-09!24;UBERON:0003084!1.80e-09!24;UBERON:0007005!1.80e-09!24;UBERON:0004139!1.80e-09!24;UBERON:0004291!1.80e-09!24;UBERON:0003104!4.64e-08!238;UBERON:0009142!4.64e-08!238;UBERON:0001009!5.60e-08!113;UBERON:0000481!1.52e-07!347;UBERON:0004535!1.57e-07!110;UBERON:0001013!1.96e-07!14;UBERON:0003914!3.65e-07!118;UBERON:0002049!3.67e-07!79;UBERON:0007798!3.67e-07!79;UBERON:0002384!4.28e-07!375;UBERON:0000490!6.35e-07!138|ontology_enrichment_uberon_v019=UBERON:0002384;6.90e-11;198!UBERON:0002385;1.81e-09;31!UBERON:0001015;1.81e-09;31!UBERON:0000383;1.81e-09;31!UBERON:0007100;1.96e-09;25!UBERON:0002097;3.50e-09;41!UBERON:0002199;3.54e-09;46!UBERON:0002416;3.54e-09;46!UBERON:0000948;6.65e-09;22!UBERON:0003102;1.92e-08;50!UBERON:0001013;1.98e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.84e-24,71;UBERON:0003059,3.84e-24,71;UBERON:0007282,3.84e-24,71;UBERON:0004290,3.84e-24,71;UBERON:0009618,3.84e-24,71;UBERON:0003077,1.78e-23,72;UBERON:0007285,1.78e-23,72;UBERON:0007524,7.83e-23,73;UBERON:0007503,1.30e-21,78;UBERON:0002385,1.24e-20,64;UBERON:0001015,1.24e-20,64;UBERON:0000383,1.24e-20,64;UBERON:0001134,6.29e-20,62;UBERON:0002036,6.29e-20,62;UBERON:0003082,6.29e-20,62;UBERON:0000486,7.20e-19,83;UBERON:0005256,1.95e-18,122;UBERON:0003104,3.40e-16,160;UBERON:0009142,3.40e-16,160;UBERON:0002199,3.93e-14,46;UBERON:0002416,3.93e-14,46;UBERON:0003102,2.13e-12,99;UBERON:0002097,1.02e-11,41;UBERON:0002384,3.78e-11,371;UBERON:0002100,7.40e-11,199;UBERON:0000926,9.76e-11,315;UBERON:0004120,9.76e-11,315;UBERON:0006603,9.76e-11,315;UBERON:0007100,3.42e-10,27;UBERON:0000948,1.06e-09,24;UBERON:0005498,1.06e-09,24;UBERON:0004140,1.06e-09,24;UBERON:0009881,1.06e-09,24;UBERON:0004141,1.06e-09,24;UBERON:0003084,1.06e-09,24;UBERON:0007005,1.06e-09,24;UBERON:0004139,1.06e-09,24;UBERON:0004291,1.06e-09,24;UBERON:0000490,1.28e-09,148;UBERON:0004872,4.84e-09,83;UBERON:0000479,3.08e-08,773;UBERON:0001013,2.05e-07,14;UBERON:0001009,3.50e-07,112;UBERON:0001637,6.30e-07,42;UBERON:0003509,6.30e-07,42;UBERON:0004572,6.30e-07,42|phase1_expression=8.90224058425727,8.56402095563933,6.48390258841467,3.00219895059391,6.25745532198203,0.872338524100369,5.06599756336621,6.94891860769514,5.22371256399677,2.94880723801811,0,6.55324116390517,3.16520373874144,3.46545788288131,4.30816588446291,2.6893005858071,7.8350288643117,3.65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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |||
|TSSclassifier=S | |||
|UniProt=P12111 | |||
|association_with_transcript=11bp_to_ENST00000295550_5end | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_4_at_COL6A3_5end | |||
|id=chr2:238322983..238323006,- | |||
|ontology_enrichment_celltype=CL:0000055!2.47e-44!180;CL:0000057!3.63e-31!75;CL:0000183!7.42e-20!59;CL:0000680!2.45e-19!57;CL:0000056!2.45e-19!57;CL:0000355!2.45e-19!57;CL:0000187!4.84e-19!54;CL:0000048!2.58e-15!430;CL:0000393!4.44e-15!60;CL:0000211!4.44e-15!60;CL:0002620!2.84e-14!23;CL:0000723!3.48e-14!436;CL:0000192!3.45e-13!42;CL:0000514!3.45e-13!42;CL:0000034!9.25e-13!444;CL:0000359!3.21e-09!32;CL:0002494!7.56e-08!16;CL:0002570!5.17e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.11e-16;23!CL:0000057;2.04e-14;73!CL:0000187;7.00e-12;55!CL:0000134;8.83e-11;55!CL:0002320;1.74e-10;188!CL:0000723;1.85e-10;61!CL:0000192;3.49e-10;43!CL:0000048;7.83e-10;58!CL:0000393;1.09e-09;61!CL:0000211;1.09e-09;61!CL:0000359;6.95e-09;32!CL:0002494;1.36e-08;16!CL:0002570;1.23e-07;8!CL:0000034;2.15e-07;69!CL:0002334;7.87e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.74e-36,76;CL:0000048,7.21e-22,427;CL:0000187,3.70e-21,55;CL:0000680,6.96e-21,58;CL:0000056,6.96e-21,58;CL:0000355,6.96e-21,58;CL:0000723,1.14e-20,433;CL:0000034,3.89e-19,441;CL:0000393,3.13e-17,61;CL:0000211,3.13e-17,61;CL:0002620,8.82e-16,23;CL:0000192,1.27e-14,43;CL:0000514,1.27e-14,43;CL:0002320,1.23e-10,361;CL:0000359,1.44e-09,32;CL:0000134,3.87e-09,354;CL:0002494,1.35e-08,16;CL:0002570,1.16e-07,8;CL:0000219,2.23e-07,386;CL:0002334,7.24e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000355;4.30e-12;58!CL:0000514;3.49e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;5.09e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.22e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.22e-23!83;UBERON:0002329!4.22e-23!83;UBERON:0003077!4.22e-23!83;UBERON:0003059!4.22e-23!83;UBERON:0007282!4.22e-23!83;UBERON:0009618!4.22e-23!83;UBERON:0007285!4.22e-23!83;UBERON:0004290!9.43e-23!70;UBERON:0002385!1.40e-19!63;UBERON:0001015!1.40e-19!63;UBERON:0000383!1.40e-19!63;UBERON:0001134!6.02e-19!61;UBERON:0002036!6.02e-19!61;UBERON:0003082!6.02e-19!61;UBERON:0005256!1.02e-17!143;UBERON:0000486!3.67e-17!82;UBERON:0003102!2.40e-12!95;UBERON:0002199!7.87e-12!45;UBERON:0002416!7.87e-12!45;UBERON:0002100!8.01e-12!216;UBERON:0000475!2.71e-11!365;UBERON:0007100!6.84e-10!27;UBERON:0004872!7.05e-10!84;UBERON:0002097!1.04e-09!40;UBERON:0000948!1.80e-09!24;UBERON:0005498!1.80e-09!24;UBERON:0004140!1.80e-09!24;UBERON:0009881!1.80e-09!24;UBERON:0004141!1.80e-09!24;UBERON:0003084!1.80e-09!24;UBERON:0007005!1.80e-09!24;UBERON:0004139!1.80e-09!24;UBERON:0004291!1.80e-09!24;UBERON:0003104!4.64e-08!238;UBERON:0009142!4.64e-08!238;UBERON:0001009!5.60e-08!113;UBERON:0000481!1.52e-07!347;UBERON:0004535!1.57e-07!110;UBERON:0001013!1.96e-07!14;UBERON:0003914!3.65e-07!118;UBERON:0002049!3.67e-07!79;UBERON:0007798!3.67e-07!79;UBERON:0002384!4.28e-07!375;UBERON:0000490!6.35e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;6.90e-11;198!UBERON:0002385;1.81e-09;31!UBERON:0001015;1.81e-09;31!UBERON:0000383;1.81e-09;31!UBERON:0007100;1.96e-09;25!UBERON:0002097;3.50e-09;41!UBERON:0002199;3.54e-09;46!UBERON:0002416;3.54e-09;46!UBERON:0000948;6.65e-09;22!UBERON:0003102;1.92e-08;50!UBERON:0001013;1.98e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.84e-24,71;UBERON:0003059,3.84e-24,71;UBERON:0007282,3.84e-24,71;UBERON:0004290,3.84e-24,71;UBERON:0009618,3.84e-24,71;UBERON:0003077,1.78e-23,72;UBERON:0007285,1.78e-23,72;UBERON:0007524,7.83e-23,73;UBERON:0007503,1.30e-21,78;UBERON:0002385,1.24e-20,64;UBERON:0001015,1.24e-20,64;UBERON:0000383,1.24e-20,64;UBERON:0001134,6.29e-20,62;UBERON:0002036,6.29e-20,62;UBERON:0003082,6.29e-20,62;UBERON:0000486,7.20e-19,83;UBERON:0005256,1.95e-18,122;UBERON:0003104,3.40e-16,160;UBERON:0009142,3.40e-16,160;UBERON:0002199,3.93e-14,46;UBERON:0002416,3.93e-14,46;UBERON:0003102,2.13e-12,99;UBERON:0002097,1.02e-11,41;UBERON:0002384,3.78e-11,371;UBERON:0002100,7.40e-11,199;UBERON:0000926,9.76e-11,315;UBERON:0004120,9.76e-11,315;UBERON:0006603,9.76e-11,315;UBERON:0007100,3.42e-10,27;UBERON:0000948,1.06e-09,24;UBERON:0005498,1.06e-09,24;UBERON:0004140,1.06e-09,24;UBERON:0009881,1.06e-09,24;UBERON:0004141,1.06e-09,24;UBERON:0003084,1.06e-09,24;UBERON:0007005,1.06e-09,24;UBERON:0004139,1.06e-09,24;UBERON:0004291,1.06e-09,24;UBERON:0000490,1.28e-09,148;UBERON:0004872,4.84e-09,83;UBERON:0000479,3.08e-08,773;UBERON:0001013,2.05e-07,14;UBERON:0001009,3.50e-07,112;UBERON:0001637,6.30e-07,42;UBERON:0003509,6.30e-07,42;UBERON:0004572,6.30e-07,42 | |||
|phase1_expression=8.90224058425727,8.56402095563933,6.48390258841467,3.00219895059391,6.25745532198203,0.872338524100369,5.06599756336621,6.94891860769514,5.22371256399677,2.94880723801811,0,6.55324116390517,3.16520373874144,3.46545788288131,4.30816588446291,2.6893005858071,7.8350288643117,3.65155045193687,4.87932798790507,0.861847406537515,1.42800483870977,1.56727360739044,0.286235987131057,0.273748850145768,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8187552945358,4.02420515822182,6.00954040664593,1.80719576192283,4.01070328508712,2.02785126545153,16.7010048880731,10.705967146658,0.189069634328136,0,0.087834785693126,1.57174890597255,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0.66944122552934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.933382937297,4.81195944325403,11.1223711883104,37.8624339388434,6.73869926176878,1.68203280042692,3.20246987189115,3.45334567784024,7.78027588499416,5.79255889899659,6.21155231831143,16.1952447580077,20.74233328128,9.13853584151807,5.61888138294577,4.56377457235559,4.03511437489863,4.3450764498193,3.0755859429945,3.65172097425846,10.2077085627447,4.17636678860011,8.26606249406124,7.12801714369232,5.68713937340681,15.4727431529464,10.0606539854273,5.89176398839232,4.12891115577482,6.09541054065202,5.26773145057006,6.12975591598039,4.20666564938471,3.28953331164061,40.5420576656828,17.298148494304,16.9545520927649,33.0100205692843,20.198295730734,31.4321458855668,13.2142967995429,21.6033705268821,17.636097934177,29.7871853608055,13.7154348977026,2.90962902273861,29.465796178879,9.87370562630875,13.0561656079075,0,0,0,0,0,0,0,0,0,25.0319251727706,13.5080597020506,6.90674606762403,7.42988684851167,3.60939740834793,0,0,0,0,0,0,0,0,0,0.738155454624648,8.41450642820675,5.7620361586396,5.88034845542168,0,0,0.590789906681404,0,0,2.74508496477641,0,0,0,0,15.9646069602059,4.15973914111831,0,0,2.23076519048061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288239906833923,0.12624243342638,0.190493682876507,0,0,1.71072446022705,0.411309970813294,0,0,10.4281908441185,4.79556075716608,5.7203862940341,4.91232519879556,17.8828222925941,10.988935783228,12.233153362904,4.16029747645464,9.25946547343712,2.83698264046557,10.1240428026118,12.582063441917,19.5343777940919,8.23240336780769,12.3779750031619,16.3480296421571,6.33561498346743,0.301439377059586,0,0,0,0,0,2.39624855491583,2.29723871668228,1.42636905040718,4.63300181336253,0.205476322550383,1.25342674267927,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,4.04881922673162,3.00102312635806,1.62759014219841,2.70362119990049,3.92543775353756,2.52323864054295,2.45996971484698,5.41702979509894,2.27407504055985,1.03473071292505,7.3064815838898,5.16233671916769,6.0818530127658,7.83204629850962,7.54915532383883,0,0,0,0,0,0.907170879989041,9.17998888929474,23.0192959932094,8.98112302185835,6.15067916427365,3.58195074346692,8.68611174175481,0,13.416243360831,5.68197521002007,5.99528238900807,6.23105315020345,8.36714724911707,0,0,0,13.0888470907652,8.01201139229555,3.93373244878272,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0.647747748306418,0,3.25135725052623,3.51182841698397,0,0,0,0,0,0,0.656029291399411,0.325378394664303,2.36994326789761,0,0,1.14853107599234,0,12.8547143875328,9.6670718292122,9.24291702687866,8.44270210993712,5.51346289938122,20.3024262801037,10.2961852679102,7.41471658520078,8.1019152438531,0,0,0,0,0,41.2404174348138,3.485186350803,2.15623506123262,4.7907542728532,2.60979897622522,4.07713282028624,1.14499909393593,7.07100901783368,0.949138274156178,3.43134349062885,2.04718233049067,11.5543526769159,11.1371136774078,3.92474320099615,5.75591864266607,7.68703683260953,8.95374257827217,2.83055474202642,1.58510321173008,4.21258456238981,4.8763373908959,2.68084838594413,2.11300293513511,15.6974898119184,9.19135307699133,9.04064932961942,5.51365343546124,2.65375590096488,2.63070531152258,6.36653087693356,2.62357900818653,4.26111791621678,1.8589409885985,2.53526042279017,4.4457519183256,4.12645972255109,2.85336841185,4.25713276884717,2.74439925886963,3.29294892959902,7.20999030154859,6.29882496440969,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.15334352941955,0,0.222886768554957,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0,1.59398390600856,1.38141957765574,0,0,0,7.46495010388338,0,0,0,9.46976694114563,0,2.22273980289274,0,0,0,0,0,6.52499617891314,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,6.23297093880756,0,0,0.179515288819544,0.108647371922008,0.638002319463839,5.86224597771919,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,3.89213283814692,4.888241159469,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,1.97292201424695,1.20990716048664,0,0.947798694427319,0,0,0,0,0,0,0,0,0,0,0,2.44617335538842,4.64362287673365,0,0,0,2.90967049465258,0,0.90392296312213,6.4409704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| |||
|short_description=p4@COL6A3 | |||
}} |
Revision as of 17:37, 12 September 2013
Short description: | p4@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 11bp_to_ENST00000295550_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | P12111 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.74e-36 | 76 |
multi fate stem cell | 7.21e-22 | 427 |
muscle cell | 3.70e-21 | 55 |
muscle precursor cell | 6.96e-21 | 58 |
myoblast | 6.96e-21 | 58 |
multi-potent skeletal muscle stem cell | 6.96e-21 | 58 |
somatic stem cell | 1.14e-20 | 433 |
stem cell | 3.89e-19 | 441 |
electrically responsive cell | 3.13e-17 | 61 |
electrically active cell | 3.13e-17 | 61 |
skin fibroblast | 8.82e-16 | 23 |
smooth muscle cell | 1.27e-14 | 43 |
smooth muscle myoblast | 1.27e-14 | 43 |
connective tissue cell | 1.23e-10 | 361 |
vascular associated smooth muscle cell | 1.44e-09 | 32 |
mesenchymal cell | 3.87e-09 | 354 |
cardiocyte | 1.35e-08 | 16 |
mesenchymal stem cell of adipose | 1.16e-07 | 8 |
motile cell | 2.23e-07 | 386 |
preadipocyte | 7.24e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.22e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.