FFCP PHASE1:Hg19::chr6:72970377..72970387,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22999|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17282|TSSclassifier=S|UniProt=|association_with_transcript=-14bp_to_ENST00000463023_5end|coexpression_cluster_id=C1926|description=CAGE_peak_20_at_RIMS1_5end|id=chr6:72970377..72970387,+|ontology_enrichment_celltype=CL:0002590!6.37e-12!3;CL:0002150!1.94e-10!3;CL:0000861!1.94e-10!3;CL:0002549!1.53e-08!2;CL:0002575!1.84e-08!2|ontology_enrichment_celltype_v019=CL:0002549;1.08e-36;2!CL:0002590;3.18e-25;3!CL:0000222;1.30e-19;1!CL:0002569;5.42e-13;6!CL:0002575;2.99e-10;2!CL:0000081;1.67e-07;11!CL:0002592;2.97e-07;3|ontology_enrichment_celltype_v019_2=CL:0002549,1.42e-36,2;CL:0002590,3.38e-25,3;CL:0002569,5.76e-13,6;CL:0002575,2.49e-10,2;CL:0000081,1.73e-07,11;CL:0002592,2.97e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4231;1.43e-10;2!DOID:1907;1.43e-10;2|ontology_enrichment_disease_v019_2=DOID:4231,1.43e-10,2;DOID:1907,1.43e-10,2|ontology_enrichment_uberon=UBERON:0002200!1.05e-19!11;UBERON:0006876!1.05e-19!11;UBERON:0005284!9.64e-19!5;UBERON:0002049!1.21e-08!79;UBERON:0007798!1.21e-08!79;UBERON:0003947!1.53e-08!2;UBERON:0005629!1.53e-08!2;UBERON:0005358!1.53e-08!2;UBERON:0001886!1.53e-08!2;UBERON:0004086!1.53e-08!2;UBERON:0005282!1.53e-08!2;UBERON:0005281!1.53e-08!2|ontology_enrichment_uberon_v019=UBERON:0005284;8.66e-58;5!UBERON:0005629;1.08e-36;2!UBERON:0005358;1.08e-36;2!UBERON:0001886;1.08e-36;2!UBERON:0004086;1.08e-36;2!UBERON:0005282;1.08e-36;2!UBERON:0005281;1.08e-36;2!UBERON:0006876;1.37e-26;11!UBERON:0003422;5.42e-13;6!UBERON:0003104;2.83e-11;7!UBERON:0009142;2.83e-11;7!UBERON:0002331;3.63e-08;10!UBERON:0003498;2.97e-07;3!UBERON:0005985;2.97e-07;3!UBERON:0001621;2.97e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0005284,1.16e-57,5;UBERON:0005629,1.42e-36,2;UBERON:0005358,1.42e-36,2;UBERON:0001886,1.42e-36,2;UBERON:0004086,1.42e-36,2;UBERON:0005282,1.42e-36,2;UBERON:0005281,1.42e-36,2;UBERON:0006876,1.57e-26,11;UBERON:0003422,5.76e-13,6;UBERON:0002331,3.76e-08,10;UBERON:0000358,3.76e-08,10;UBERON:0000307,3.76e-08,10;UBERON:0000091,3.76e-08,10;UBERON:0000087,3.76e-08,10;UBERON:0007010,3.76e-08,10;UBERON:0007806,3.76e-08,10;UBERON:0008780,3.76e-08,10;UBERON:0005728,3.76e-08,10;UBERON:0001621,2.97e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0.760272105718513,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,1.05950199351452,2.30470369792,0,0,0,0,0,0,0,0,0.368502951935304,0,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11512312139057,1.14861935834114,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.813795071099207,0,0.356857977594324,0,0.117141414992713,0.601892199455438,0,0,0,0.553107505625109,0,0.783204629850962,1.71571711905428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,2.232950216158,12.3387975640303,0.571890581771475,0,0,0,0,0,0,0,0.606547444719948,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699869440489966,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0.219267951258557,0.164230914106418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60011105865261,0,0,6.30924491143255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.9980902819729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982631505060581,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p20@RIMS1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=22999 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17282 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-14bp_to_ENST00000463023_5end | |||
|coexpression_cluster_id=C1926 | |||
|description=CAGE_peak_20_at_RIMS1_5end | |||
|id=chr6:72970377..72970387,+ | |||
|ontology_enrichment_celltype=CL:0002590!6.37e-12!3;CL:0002150!1.94e-10!3;CL:0000861!1.94e-10!3;CL:0002549!1.53e-08!2;CL:0002575!1.84e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002549;1.08e-36;2!CL:0002590;3.18e-25;3!CL:0000222;1.30e-19;1!CL:0002569;5.42e-13;6!CL:0002575;2.99e-10;2!CL:0000081;1.67e-07;11!CL:0002592;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,1.42e-36,2;CL:0002590,3.38e-25,3;CL:0002569,5.76e-13,6;CL:0002575,2.49e-10,2;CL:0000081,1.73e-07,11;CL:0002592,2.97e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4231;1.43e-10;2!DOID:1907;1.43e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4231,1.43e-10,2;DOID:1907,1.43e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0002200!1.05e-19!11;UBERON:0006876!1.05e-19!11;UBERON:0005284!9.64e-19!5;UBERON:0002049!1.21e-08!79;UBERON:0007798!1.21e-08!79;UBERON:0003947!1.53e-08!2;UBERON:0005629!1.53e-08!2;UBERON:0005358!1.53e-08!2;UBERON:0001886!1.53e-08!2;UBERON:0004086!1.53e-08!2;UBERON:0005282!1.53e-08!2;UBERON:0005281!1.53e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;8.66e-58;5!UBERON:0005629;1.08e-36;2!UBERON:0005358;1.08e-36;2!UBERON:0001886;1.08e-36;2!UBERON:0004086;1.08e-36;2!UBERON:0005282;1.08e-36;2!UBERON:0005281;1.08e-36;2!UBERON:0006876;1.37e-26;11!UBERON:0003422;5.42e-13;6!UBERON:0003104;2.83e-11;7!UBERON:0009142;2.83e-11;7!UBERON:0002331;3.63e-08;10!UBERON:0003498;2.97e-07;3!UBERON:0005985;2.97e-07;3!UBERON:0001621;2.97e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,1.16e-57,5;UBERON:0005629,1.42e-36,2;UBERON:0005358,1.42e-36,2;UBERON:0001886,1.42e-36,2;UBERON:0004086,1.42e-36,2;UBERON:0005282,1.42e-36,2;UBERON:0005281,1.42e-36,2;UBERON:0006876,1.57e-26,11;UBERON:0003422,5.76e-13,6;UBERON:0002331,3.76e-08,10;UBERON:0000358,3.76e-08,10;UBERON:0000307,3.76e-08,10;UBERON:0000091,3.76e-08,10;UBERON:0000087,3.76e-08,10;UBERON:0007010,3.76e-08,10;UBERON:0007806,3.76e-08,10;UBERON:0008780,3.76e-08,10;UBERON:0005728,3.76e-08,10;UBERON:0001621,2.97e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0.760272105718513,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,1.05950199351452,2.30470369792,0,0,0,0,0,0,0,0,0.368502951935304,0,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11512312139057,1.14861935834114,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.813795071099207,0,0.356857977594324,0,0.117141414992713,0.601892199455438,0,0,0,0.553107505625109,0,0.783204629850962,1.71571711905428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,2.232950216158,12.3387975640303,0.571890581771475,0,0,0,0,0,0,0,0.606547444719948,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699869440489966,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19351266257817,0.219267951258557,0.164230914106418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60011105865261,0,0,6.30924491143255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.9980902819729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982631505060581,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p20@RIMS1 | |||
}} |
Revision as of 21:45, 13 September 2013
Short description: | p20@RIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_RIMS1_5end |
Coexpression cluster: | C1926_myxofibrosarcoma_Smooth_mesodermal_Multipotent_Fibroblast_basal_papillary |
Association with transcript: | -14bp_to_ENST00000463023_5end |
EntrezGene: | RIMS1 |
HGNC: | 17282 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 1.42e-36 | 2 |
smooth muscle cell of the brain vasculature | 3.38e-25 | 3 |
mesenchymal stem cell of umbilical cord | 5.76e-13 | 6 |
central nervous system pericyte | 2.49e-10 | 2 |
blood cell | 1.73e-07 | 11 |
smooth muscle cell of the coronary artery | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 1.16e-57 | 5 |
vascular plexus | 1.42e-36 | 2 |
ventricle of nervous system | 1.42e-36 | 2 |
choroid plexus | 1.42e-36 | 2 |
brain ventricle | 1.42e-36 | 2 |
ventricular system of brain | 1.42e-36 | 2 |
ventricular system of central nervous system | 1.42e-36 | 2 |
vasculature of organ | 1.57e-26 | 11 |
mesenchyme of umbilical cord | 5.76e-13 | 6 |
umbilical cord | 3.76e-08 | 10 |
blastocyst | 3.76e-08 | 10 |
blastula | 3.76e-08 | 10 |
bilaminar disc | 3.76e-08 | 10 |
inner cell mass | 3.76e-08 | 10 |
cleaving embryo | 3.76e-08 | 10 |
connecting stalk | 3.76e-08 | 10 |
inner cell mass derived epiblast | 3.76e-08 | 10 |
extraembryonic mesoderm | 3.76e-08 | 10 |
coronary artery | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
histiocytoma | 1.43e-10 | 2 |
malignant fibroxanthoma | 1.43e-10 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.