FFCP PHASE1:Hg19::chr9:6565462..6565475,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2731|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4313|TSSclassifier=S|UniProt=|association_with_transcript=-44bp_to_ENST00000460457_5end|coexpression_cluster_id=C1144|description=CAGE_peak_5_at_GLDC_5end|id=chr9:6565462..6565475,-|ontology_enrichment_celltype=CL:0002139!1.80e-12!24;CL:0000222!2.43e-12!119;CL:0000680!7.46e-10!57;CL:0000056!7.46e-10!57;CL:0000355!7.46e-10!57;CL:0002144!1.90e-09!3;CL:0000115!2.01e-09!35;CL:0000055!3.00e-09!180;CL:0000071!5.54e-09!18;CL:0002546!5.54e-09!18;CL:0002582!6.86e-09!3;CL:0000183!4.07e-08!59;CL:0000515!4.26e-07!4;CL:0002556!4.55e-07!6;CL:0000569!5.58e-07!4;CL:0000011!5.58e-07!4;CL:0002078!5.97e-07!44;CL:0000188!6.03e-07!9;CL:0002371!7.50e-07!591;CL:0000187!8.87e-07!54|ontology_enrichment_celltype_v019=CL:0000708;2.04e-20;3!CL:0002549;1.73e-08;2!CL:0002554;1.73e-08;2!CL:0002262;2.67e-08;2!CL:1000398;2.67e-08;2!CL:0002593;2.67e-08;2|ontology_enrichment_celltype_v019_2=CL:0000708,2.05e-20,3;CL:0002554,1.50e-08,2;CL:0002549,2.00e-08,2;CL:0002262,2.48e-08,2;CL:1000398,2.48e-08,2;CL:0002593,2.87e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4074;1.73e-08;2!DOID:4905;1.73e-08;2!DOID:3498;1.73e-08;2|ontology_enrichment_disease_v019_2=DOID:4074,1.61e-08,2;DOID:4905,1.61e-08,2;DOID:3498,1.61e-08,2|ontology_enrichment_uberon=UBERON:0002049!1.96e-13!79;UBERON:0007798!1.96e-13!79;UBERON:0000055!4.13e-13!69;UBERON:0000914!1.34e-12!83;UBERON:0002329!1.34e-12!83;UBERON:0003077!1.34e-12!83;UBERON:0003059!1.34e-12!83;UBERON:0007282!1.34e-12!83;UBERON:0009618!1.34e-12!83;UBERON:0007285!1.34e-12!83;UBERON:0004535!6.15e-11!110;UBERON:0001009!1.79e-10!113;UBERON:0001981!1.34e-09!60;UBERON:0007500!1.34e-09!60;UBERON:0004537!1.34e-09!60;UBERON:0006965!1.34e-09!60;UBERON:0001915!1.90e-09!3;UBERON:0001982!1.90e-09!3;UBERON:0004290!2.10e-09!70;UBERON:0001986!5.54e-09!18;UBERON:0004638!5.54e-09!18;UBERON:0004852!5.54e-09!18;UBERON:0001134!6.05e-09!61;UBERON:0002036!6.05e-09!61;UBERON:0003082!6.05e-09!61;UBERON:0002385!1.55e-08!63;UBERON:0001015!1.55e-08!63;UBERON:0000383!1.55e-08!63;UBERON:0004872!1.61e-08!84;UBERON:0000486!2.20e-07!82;UBERON:0000487!4.32e-07!22;UBERON:0000490!4.52e-07!138;UBERON:0001758!4.55e-07!6;UBERON:0003672!4.55e-07!6;UBERON:0002119!6.05e-07!4;UBERON:0004531!6.05e-07!4|ontology_enrichment_uberon_v019=UBERON:0003210;2.04e-20;3!UBERON:0003513;6.30e-09;7!UBERON:0005629;1.73e-08;2!UBERON:0005358;1.73e-08;2!UBERON:0001886;1.73e-08;2!UBERON:0004086;1.73e-08;2!UBERON:0005282;1.73e-08;2!UBERON:0005281;1.73e-08;2!UBERON:0001281;2.67e-08;2!UBERON:0003497;2.67e-08;2!UBERON:0003909;2.67e-08;2!UBERON:0003835;2.67e-08;2!UBERON:0002456;2.67e-08;2!UBERON:0001473;4.19e-08;8!UBERON:0004536;4.19e-08;8!UBERON:0006558;4.19e-08;8|ontology_enrichment_uberon_v019_2=UBERON:0003210,2.05e-20,3;UBERON:0003513,6.31e-09,7;UBERON:0005629,2.00e-08,2;UBERON:0005358,2.00e-08,2;UBERON:0001886,2.00e-08,2;UBERON:0004086,2.00e-08,2;UBERON:0005282,2.00e-08,2;UBERON:0005281,2.00e-08,2;UBERON:0001281,2.48e-08,2;UBERON:0003497,2.48e-08,2;UBERON:0003909,2.48e-08,2;UBERON:0003835,2.48e-08,2;UBERON:0002456,2.87e-08,2;UBERON:0001473,4.04e-08,8;UBERON:0004536,4.04e-08,8;UBERON:0006558,4.04e-08,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.417989933073621,0,0,0,0.805658634218294,1.52054421143703,0.24406205754817,0.367663080345869,0,0.714397826272638,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,2.11900398702904,0,0,0.312160076830321,0,0,0.117434498643765,0,0,0.61246251376468,0,0.103325781175765,0,0,2.73048408581408,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16549671641611,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,7.40065156679381,0,6.6004457238855,0,0,0.845302752556,0.26593811658487,0,0,0,1.3321108950805,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,1.01346914667305,0.205476322550383,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.587403472388222,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.246381468041427,2.07701771673448,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.307007349452259,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0.636406495851874,0,0,0,0,0.80872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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2731 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4313 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-44bp_to_ENST00000460457_5end | |||
|coexpression_cluster_id=C1144 | |||
|description=CAGE_peak_5_at_GLDC_5end | |||
|id=chr9:6565462..6565475,- | |||
|ontology_enrichment_celltype=CL:0002139!1.80e-12!24;CL:0000222!2.43e-12!119;CL:0000680!7.46e-10!57;CL:0000056!7.46e-10!57;CL:0000355!7.46e-10!57;CL:0002144!1.90e-09!3;CL:0000115!2.01e-09!35;CL:0000055!3.00e-09!180;CL:0000071!5.54e-09!18;CL:0002546!5.54e-09!18;CL:0002582!6.86e-09!3;CL:0000183!4.07e-08!59;CL:0000515!4.26e-07!4;CL:0002556!4.55e-07!6;CL:0000569!5.58e-07!4;CL:0000011!5.58e-07!4;CL:0002078!5.97e-07!44;CL:0000188!6.03e-07!9;CL:0002371!7.50e-07!591;CL:0000187!8.87e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000708;2.04e-20;3!CL:0002549;1.73e-08;2!CL:0002554;1.73e-08;2!CL:0002262;2.67e-08;2!CL:1000398;2.67e-08;2!CL:0002593;2.67e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,2.05e-20,3;CL:0002554,1.50e-08,2;CL:0002549,2.00e-08,2;CL:0002262,2.48e-08,2;CL:1000398,2.48e-08,2;CL:0002593,2.87e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4074;1.73e-08;2!DOID:4905;1.73e-08;2!DOID:3498;1.73e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4074,1.61e-08,2;DOID:4905,1.61e-08,2;DOID:3498,1.61e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.96e-13!79;UBERON:0007798!1.96e-13!79;UBERON:0000055!4.13e-13!69;UBERON:0000914!1.34e-12!83;UBERON:0002329!1.34e-12!83;UBERON:0003077!1.34e-12!83;UBERON:0003059!1.34e-12!83;UBERON:0007282!1.34e-12!83;UBERON:0009618!1.34e-12!83;UBERON:0007285!1.34e-12!83;UBERON:0004535!6.15e-11!110;UBERON:0001009!1.79e-10!113;UBERON:0001981!1.34e-09!60;UBERON:0007500!1.34e-09!60;UBERON:0004537!1.34e-09!60;UBERON:0006965!1.34e-09!60;UBERON:0001915!1.90e-09!3;UBERON:0001982!1.90e-09!3;UBERON:0004290!2.10e-09!70;UBERON:0001986!5.54e-09!18;UBERON:0004638!5.54e-09!18;UBERON:0004852!5.54e-09!18;UBERON:0001134!6.05e-09!61;UBERON:0002036!6.05e-09!61;UBERON:0003082!6.05e-09!61;UBERON:0002385!1.55e-08!63;UBERON:0001015!1.55e-08!63;UBERON:0000383!1.55e-08!63;UBERON:0004872!1.61e-08!84;UBERON:0000486!2.20e-07!82;UBERON:0000487!4.32e-07!22;UBERON:0000490!4.52e-07!138;UBERON:0001758!4.55e-07!6;UBERON:0003672!4.55e-07!6;UBERON:0002119!6.05e-07!4;UBERON:0004531!6.05e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003210;2.04e-20;3!UBERON:0003513;6.30e-09;7!UBERON:0005629;1.73e-08;2!UBERON:0005358;1.73e-08;2!UBERON:0001886;1.73e-08;2!UBERON:0004086;1.73e-08;2!UBERON:0005282;1.73e-08;2!UBERON:0005281;1.73e-08;2!UBERON:0001281;2.67e-08;2!UBERON:0003497;2.67e-08;2!UBERON:0003909;2.67e-08;2!UBERON:0003835;2.67e-08;2!UBERON:0002456;2.67e-08;2!UBERON:0001473;4.19e-08;8!UBERON:0004536;4.19e-08;8!UBERON:0006558;4.19e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,2.05e-20,3;UBERON:0003513,6.31e-09,7;UBERON:0005629,2.00e-08,2;UBERON:0005358,2.00e-08,2;UBERON:0001886,2.00e-08,2;UBERON:0004086,2.00e-08,2;UBERON:0005282,2.00e-08,2;UBERON:0005281,2.00e-08,2;UBERON:0001281,2.48e-08,2;UBERON:0003497,2.48e-08,2;UBERON:0003909,2.48e-08,2;UBERON:0003835,2.48e-08,2;UBERON:0002456,2.87e-08,2;UBERON:0001473,4.04e-08,8;UBERON:0004536,4.04e-08,8;UBERON:0006558,4.04e-08,8 | |||
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|short_description=p5@GLDC | |||
}} |
Revision as of 09:11, 14 September 2013
Short description: | p5@GLDC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_GLDC_5end |
Coexpression cluster: | C1144_Meningeal_Fibroblast_mesenchymal_ductal_Smooth_Preadipocyte_Pericytes |
Association with transcript: | -44bp_to_ENST00000460457_5end |
EntrezGene: | GLDC |
HGNC: | 4313 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 2.05e-20 | 3 |
fibroblast of lymphatic vessel | 1.50e-08 | 2 |
fibroblast of choroid plexus | 2.00e-08 | 2 |
endothelial cell of sinusoid | 2.48e-08 | 2 |
endothelial cell of hepatic sinusoid | 2.48e-08 | 2 |
smooth muscle cell of the internal thoracic artery | 2.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 2.05e-20 | 3 |
trunk blood vessel | 6.31e-09 | 7 |
vascular plexus | 2.00e-08 | 2 |
ventricle of nervous system | 2.00e-08 | 2 |
choroid plexus | 2.00e-08 | 2 |
brain ventricle | 2.00e-08 | 2 |
ventricular system of brain | 2.00e-08 | 2 |
ventricular system of central nervous system | 2.00e-08 | 2 |
hepatic sinusoid | 2.48e-08 | 2 |
abdomen blood vessel | 2.48e-08 | 2 |
sinusoid | 2.48e-08 | 2 |
abdominal segment blood vessel | 2.48e-08 | 2 |
internal thoracic artery | 2.87e-08 | 2 |
lymphatic vessel | 4.04e-08 | 8 |
lymph vasculature | 4.04e-08 | 8 |
lymphatic part of lymphoid system | 4.04e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
pancreas adenocarcinoma | 1.61e-08 | 2 |
pancreatic carcinoma | 1.61e-08 | 2 |
pancreatic ductal adenocarcinoma | 1.61e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.