FFCP PHASE1:Hg19::chr19:54704688..54704693,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6203 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10442 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=11bp_to_ENST00000484121_5end | |||
|description=CAGE_peak_3_at_RPS9_5end | |||
|id=chr19:54704688..54704693,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.07e-10!180;CL:0000183!2.67e-10!59;CL:0000144!2.62e-09!625;CL:0000393!3.30e-09!60;CL:0000211!3.30e-09!60;CL:0002371!8.37e-09!591;CL:0000187!1.24e-08!54;CL:0000680!1.40e-08!57;CL:0000056!1.40e-08!57;CL:0000355!1.40e-08!57;CL:0000192!1.60e-08!42;CL:0000514!1.60e-08!42;CL:0000222!4.43e-08!119;CL:0002321!5.67e-08!248;CL:0000220!7.60e-08!246;CL:0000548!2.29e-07!679;CL:0000004!2.29e-07!679;CL:0000255!2.29e-07!679;CL:0000359!3.41e-07!32;CL:0000012!3.77e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.29e-07;32!CL:0000192;3.15e-07;43!CL:1000449;3.76e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,3.61e-09,61;CL:0000211,3.61e-09,61;CL:0000187,1.83e-08,55;CL:0000680,3.14e-08,58;CL:0000056,3.14e-08,58;CL:0000355,3.14e-08,58;CL:0000192,3.18e-08,43;CL:0000514,3.18e-08,43;CL:0000359,2.42e-07,32;CL:0002321,4.02e-07,250;CL:1000449,4.48e-07,15;CL:0000222,7.58e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;3.15e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-10!83;UBERON:0002329!1.01e-10!83;UBERON:0003077!1.01e-10!83;UBERON:0003059!1.01e-10!83;UBERON:0007282!1.01e-10!83;UBERON:0009618!1.01e-10!83;UBERON:0007285!1.01e-10!83;UBERON:0004290!2.78e-09!70;UBERON:0005256!5.07e-09!143;UBERON:0000486!1.44e-08!82;UBERON:0001134!4.87e-07!61;UBERON:0002036!4.87e-07!61;UBERON:0003082!4.87e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.76e-07;15!UBERON:0004819;3.76e-07;15!UBERON:0001285;3.76e-07;15!UBERON:0007684;3.76e-07;15!UBERON:0000353;9.75e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.67e-11,78;UBERON:0007524,2.00e-09,73;UBERON:0002329,2.82e-09,71;UBERON:0003059,2.82e-09,71;UBERON:0007282,2.82e-09,71;UBERON:0004290,2.82e-09,71;UBERON:0009618,2.82e-09,71;UBERON:0003077,3.69e-09,72;UBERON:0007285,3.69e-09,72;UBERON:0000486,3.42e-08,83;UBERON:0003104,1.08e-07,160;UBERON:0009142,1.08e-07,160;UBERON:0004211,4.48e-07,15;UBERON:0009773,4.48e-07,15;UBERON:0001231,4.48e-07,15;UBERON:0001285,4.48e-07,15;UBERON:0007684,4.48e-07,15;UBERON:0004208,4.48e-07,15;UBERON:0000353,4.61e-07,15;UBERON:0001134,6.48e-07,62;UBERON:0002036,6.48e-07,62;UBERON:0003082,6.48e-07,62;UBERON:0006555,6.95e-07,16;UBERON:0004819,6.95e-07,16 | |||
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| |||
|short_description=p3@RPS9 | |||
}} |
Revision as of 01:02, 21 January 2014
Short description: | p3@RPS9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RPS9_5end |
Coexpression cluster: | NA |
Association with transcript: | 11bp_to_ENST00000484121_5end |
EntrezGene: | RPS9 |
HGNC: | 10442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 3.61e-09 | 61 |
electrically active cell | 3.61e-09 | 61 |
muscle cell | 1.83e-08 | 55 |
muscle precursor cell | 3.14e-08 | 58 |
myoblast | 3.14e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.14e-08 | 58 |
smooth muscle cell | 3.18e-08 | 43 |
smooth muscle myoblast | 3.18e-08 | 43 |
vascular associated smooth muscle cell | 2.42e-07 | 32 |
embryonic cell | 4.02e-07 | 250 |
epithelial cell of nephron | 4.48e-07 | 15 |
mesodermal cell | 7.58e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.67e-11 | 78 |
dense mesenchyme tissue | 2.00e-09 | 73 |
somite | 2.82e-09 | 71 |
presomitic mesoderm | 2.82e-09 | 71 |
presumptive segmental plate | 2.82e-09 | 71 |
dermomyotome | 2.82e-09 | 71 |
trunk paraxial mesoderm | 2.82e-09 | 71 |
paraxial mesoderm | 3.69e-09 | 72 |
presumptive paraxial mesoderm | 3.69e-09 | 72 |
multilaminar epithelium | 3.42e-08 | 83 |
mesenchyme | 1.08e-07 | 160 |
entire embryonic mesenchyme | 1.08e-07 | 160 |
nephron epithelium | 4.48e-07 | 15 |
renal tubule | 4.48e-07 | 15 |
nephron tubule | 4.48e-07 | 15 |
nephron | 4.48e-07 | 15 |
uriniferous tubule | 4.48e-07 | 15 |
nephrogenic mesenchyme | 4.48e-07 | 15 |
parenchyma | 4.61e-07 | 15 |
skeletal muscle tissue | 6.48e-07 | 62 |
striated muscle tissue | 6.48e-07 | 62 |
myotome | 6.48e-07 | 62 |
excretory tube | 6.95e-07 | 16 |
kidney epithelium | 6.95e-07 | 16 |