FFCP PHASE1:Hg19::chr1:162600646..162600659,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:162600646..162600659,+ | |||
|id=chr1:162600646..162600659,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.28e-24!180;CL:0000680!7.08e-17!57;CL:0000056!7.08e-17!57;CL:0000355!7.08e-17!57;CL:0000057!7.88e-16!75;CL:0000187!1.13e-15!54;CL:0000183!1.11e-13!59;CL:0000393!3.58e-13!60;CL:0000211!3.58e-13!60;CL:0000192!1.36e-12!42;CL:0000514!1.36e-12!42;CL:0000222!3.74e-11!119;CL:0002620!1.43e-10!23;CL:0000359!9.38e-10!32;CL:0000048!1.99e-08!430;CL:0002494!9.02e-08!16;CL:0000723!9.60e-08!436;CL:0000136!2.07e-07!15;CL:0000034!6.87e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.26e-12;23!CL:0000134;4.40e-12;55!CL:0000048;1.91e-11;58!CL:0002570;2.55e-09;8!CL:0000723;3.15e-09;61!CL:0000359;5.09e-09;32!CL:0002494;2.12e-08;16!CL:0002595;1.24e-07;5!CL:0000569;4.73e-07;4!CL:0000192;6.61e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,8.74e-13,23;CL:0000359,1.47e-09,32;CL:0002570,3.15e-09,8;CL:0000057,5.33e-09,76;CL:0000136,7.83e-09,15;CL:0000192,8.53e-09,43;CL:0000514,8.53e-09,43;CL:0000048,1.08e-08,427;CL:0002494,1.37e-08,16;CL:0000187,1.86e-08,55;CL:0000723,2.84e-08,433;CL:0000034,9.73e-08,441;CL:0000680,9.99e-08,58;CL:0000056,9.99e-08,58;CL:0000355,9.99e-08,58;CL:0002595,1.59e-07,5;CL:0000569,2.65e-07,4;CL:0000011,2.65e-07,4;CL:0000393,4.47e-07,61;CL:0000211,4.47e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000011;4.73e-07;4!CL:0000514;6.61e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!2.34e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.62e-12;14!DOID:17;9.72e-09;5!DOID:450;9.72e-09;5!DOID:66;9.72e-09;5!DOID:423;9.72e-09;5!DOID:0080000;9.72e-09;5!DOID:11722;9.72e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.85e-13,14;DOID:17,9.21e-09,5;DOID:450,9.21e-09,5;DOID:66,9.21e-09,5;DOID:423,9.21e-09,5;DOID:0080000,9.21e-09,5;DOID:11722,9.21e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!8.21e-19!83;UBERON:0002329!8.21e-19!83;UBERON:0003077!8.21e-19!83;UBERON:0003059!8.21e-19!83;UBERON:0007282!8.21e-19!83;UBERON:0009618!8.21e-19!83;UBERON:0007285!8.21e-19!83;UBERON:0004290!6.00e-17!70;UBERON:0002385!1.62e-16!63;UBERON:0001015!1.62e-16!63;UBERON:0000383!1.62e-16!63;UBERON:0001134!1.34e-15!61;UBERON:0002036!1.34e-15!61;UBERON:0003082!1.34e-15!61;UBERON:0000486!1.21e-13!82;UBERON:0004872!7.93e-13!84;UBERON:0005256!1.54e-11!143;UBERON:0007100!1.32e-10!27;UBERON:0001637!9.25e-10!42;UBERON:0003509!9.25e-10!42;UBERON:0004572!9.25e-10!42;UBERON:0000948!1.12e-09!24;UBERON:0005498!1.12e-09!24;UBERON:0004140!1.12e-09!24;UBERON:0009881!1.12e-09!24;UBERON:0004141!1.12e-09!24;UBERON:0003084!1.12e-09!24;UBERON:0007005!1.12e-09!24;UBERON:0004139!1.12e-09!24;UBERON:0004291!1.12e-09!24;UBERON:0001009!1.03e-08!113;UBERON:0001981!1.14e-08!60;UBERON:0007500!1.14e-08!60;UBERON:0004537!1.14e-08!60;UBERON:0006965!1.14e-08!60;UBERON:0000490!1.33e-08!138;UBERON:0004573!2.86e-08!33;UBERON:0004571!2.86e-08!33;UBERON:0002100!3.12e-08!216;UBERON:0004535!5.14e-08!110;UBERON:0002199!1.15e-07!45;UBERON:0002416!1.15e-07!45;UBERON:0003914!4.25e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;1.41e-09;22!UBERON:0000992;9.91e-09;13!UBERON:0004573;2.55e-08;33!UBERON:0004571;2.55e-08;33!UBERON:0007100;4.91e-08;25!UBERON:0002118;8.42e-08;5!UBERON:0003834;1.24e-07;5!UBERON:0001533;1.24e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.05e-11,83;UBERON:0000948,2.69e-10,24;UBERON:0005498,2.69e-10,24;UBERON:0004140,2.69e-10,24;UBERON:0009881,2.69e-10,24;UBERON:0004141,2.69e-10,24;UBERON:0003084,2.69e-10,24;UBERON:0007005,2.69e-10,24;UBERON:0004139,2.69e-10,24;UBERON:0004291,2.69e-10,24;UBERON:0004573,1.89e-09,33;UBERON:0004571,1.89e-09,33;UBERON:0000992,2.88e-09,13;UBERON:0007100,9.59e-09,27;UBERON:0000926,1.12e-08,315;UBERON:0004120,1.12e-08,315;UBERON:0006603,1.12e-08,315;UBERON:0004535,1.14e-08,109;UBERON:0002097,1.21e-08,41;UBERON:0001637,1.36e-08,42;UBERON:0003509,1.36e-08,42;UBERON:0004572,1.36e-08,42;UBERON:0002118,1.91e-08,5;UBERON:0002199,2.79e-08,46;UBERON:0002416,2.79e-08,46;UBERON:0001009,3.36e-08,112;UBERON:0003914,1.26e-07,117;UBERON:0003834,1.59e-07,5;UBERON:0001533,1.59e-07,5;UBERON:0002385,2.61e-07,64;UBERON:0001015,2.61e-07,64;UBERON:0000383,2.61e-07,64;UBERON:0001134,7.10e-07,62;UBERON:0002036,7.10e-07,62;UBERON:0003082,7.10e-07,62 | |||
|phase1_expression=0.363356758541113,0.856402095563933,1.55049844505568,2.00146596706261,1.78784437770915,0,0,2.52687949370732,0.522371256399677,0,0,0,0,0.74259811776028,1.98838425436749,1.34465029290355,1.20538905604795,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.12786256184353,0.722878304769133,0.50133791063589,0.289693037921647,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.417989933073621,0,0,0,0,0,0,0,0,0.357198913136319,0,0.563057402416611,0,0,0.183201743930407,0,0,0,0,1.13967460498122,7.94455084879313,6.59724227722272,0,0,0,0.49333509683432,2.48968828319813,1.21239604862719,2.12500474047496,1.21085942115945,0,0,0.624320153660641,0,0.298897361103602,0.469737994575059,0.323745888736263,0.421352420106746,1.02077085627447,0.245668634623536,0.206651562351531,0,0.494533858557114,0,0,0.168336113954066,0.375355559615893,0.554128230968366,0.877955241761676,0.612975591598039,1.35214253015937,0.794025282120147,7.17558542755448,1.2813443329114,1.48352330811693,3.00091096084402,2.26715564324566,1.03056216018252,0,3.20675031258406,1.55899208257918,1.26216887122057,1.74894807420369,2.90962902273861,3.55009592516614,2.51880245569101,1.18692414617341,0,0,0,0,0,0,0,0,0,3.12899064659632,0.643240938192885,0,0,2.16563844500876,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.1466765716419,2.19761916788222,7.15312891703765,2.535908257668,1.32969058292435,2.08014873822732,0.257207374262142,0,0,1.14382394926518,0.542621605391443,0,0.325736184293735,0.710783897485092,0,3.01439377059586,0,2.59929777073348,0,0,0,1.4377491329495,2.29723871668228,0,0.868687840005475,0.821905290201534,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.20844685094452,1.00034104211935,0.542530047399471,1.66376689224646,0.178428988797162,0.315404830067869,0.702848489956279,0.300946099727719,0,0,0.664225598535437,0,0.695068915744663,0.195801157462741,0,0,0,0,0,0,0,0.744323423456331,0.61384789315225,0,1.02511319404561,0.511707249066704,0.804269605718038,0,0.771048469013278,0.710246901252508,0.98552587216571,0,0.813472649219715,0,0,0,0.459257792658427,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,4.82051789532479,0.48335359146061,0.154048617114644,0.614014698904518,0.551346289938122,1.50388342815583,0.290033387828457,0.255679882248303,0.356128142586949,0,0,0,0,0,4.09256050879832,0.6970372701606,0,1.06461206063404,1.73986598415015,0,1.43124886741991,0,0.632758849437452,1.5250415513906,0.255897791311334,0.42793898803392,1.27281299170375,0.78494864019923,0.719489830333259,0.823611089208164,0.353437207037059,0.404364963146632,1.58510321173008,0.842516912477962,0.48763373908959,1.21856744815642,1.05650146756755,1.22849920267187,1.1312434556297,2.26016233240486,2.2054613741845,1.99031692572366,1.31535265576129,0,1.31178950409327,0.405820753925408,0,1.40847801266121,1.29070216983646,0.88424136911809,0,0.709522128141196,1.47775344708365,4.93942339439853,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.222886768554957,0,0,5.93929361665277,0,0,0,0.333926115068718,0,0,1.79323189425963,0,0,0.20453736500431,0.246169610922139,2.17727711363265,0.0898683511473268,0,0,1.67693789582787,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,1.59518878185802,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.707660516026713,0,1.48260564340311,1.11207545051853,0.939797545549098,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.63186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.52418000472609,0.171986032471617,0,0.0730893170861856,0,1.45483524732629,0,1.35588444468319,0.411125773940253,0.397429223405979,0,0,0,0.85381197895741,0,0,0,0,0,0,0,1.22313785466253,1.255234155748,0.101998217636322,3.46740707881823,0,0,0,0.429765441419957,0,1.39641200636127,0.687481272035051,0,0.199679000498991,0.858452096273142,0.669514372325618,2.28423806454869,3.60299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,1.32418394073086,0,1.62899880526114,3.45688596480507,2.28611152076586,1.19730191562487,0,2.3854323049959,0.113312091520126,0,0,0,0,0,0,0.213574825135389,0.943225830597996,0.414239055347196,0.496166021811951,0,0,0,1.08803560673895,1.5041393641362,1.53172788381731,1.31149052283922,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,1.19403842309499,1.40227985908335,1.10961172300523,0.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| |||
|short_description=p@chr1:162600646..162600659,+ | |||
}} |
Revision as of 21:58, 10 January 2014
Short description: | p@chr1:162600646..162600659, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:162600646..162600659, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 8.74e-13 | 23 |
vascular associated smooth muscle cell | 1.47e-09 | 32 |
mesenchymal stem cell of adipose | 3.15e-09 | 8 |
fibroblast | 5.33e-09 | 76 |
fat cell | 7.83e-09 | 15 |
smooth muscle cell | 8.53e-09 | 43 |
smooth muscle myoblast | 8.53e-09 | 43 |
multi fate stem cell | 1.08e-08 | 427 |
cardiocyte | 1.37e-08 | 16 |
muscle cell | 1.86e-08 | 55 |
somatic stem cell | 2.84e-08 | 433 |
stem cell | 9.73e-08 | 441 |
muscle precursor cell | 9.99e-08 | 58 |
myoblast | 9.99e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.99e-08 | 58 |
smooth muscle cell of the subclavian artery | 1.59e-07 | 5 |
cardiac mesenchymal cell | 2.65e-07 | 4 |
migratory trunk neural crest cell | 2.65e-07 | 4 |
electrically responsive cell | 4.47e-07 | 61 |
electrically active cell | 4.47e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 1.05e-11 | 83 |
heart | 2.69e-10 | 24 |
primitive heart tube | 2.69e-10 | 24 |
primary heart field | 2.69e-10 | 24 |
anterior lateral plate mesoderm | 2.69e-10 | 24 |
heart tube | 2.69e-10 | 24 |
heart primordium | 2.69e-10 | 24 |
cardiac mesoderm | 2.69e-10 | 24 |
cardiogenic plate | 2.69e-10 | 24 |
heart rudiment | 2.69e-10 | 24 |
systemic artery | 1.89e-09 | 33 |
systemic arterial system | 1.89e-09 | 33 |
female gonad | 2.88e-09 | 13 |
primary circulatory organ | 9.59e-09 | 27 |
mesoderm | 1.12e-08 | 315 |
mesoderm-derived structure | 1.12e-08 | 315 |
presumptive mesoderm | 1.12e-08 | 315 |
cardiovascular system | 1.14e-08 | 109 |
skin of body | 1.21e-08 | 41 |
artery | 1.36e-08 | 42 |
arterial blood vessel | 1.36e-08 | 42 |
arterial system | 1.36e-08 | 42 |
right ovary | 1.91e-08 | 5 |
integument | 2.79e-08 | 46 |
integumental system | 2.79e-08 | 46 |
circulatory system | 3.36e-08 | 112 |
epithelial tube | 1.26e-07 | 117 |
thoracic segment blood vessel | 1.59e-07 | 5 |
subclavian artery | 1.59e-07 | 5 |
muscle tissue | 2.61e-07 | 64 |
musculature | 2.61e-07 | 64 |
musculature of body | 2.61e-07 | 64 |
skeletal muscle tissue | 7.10e-07 | 62 |
striated muscle tissue | 7.10e-07 | 62 |
myotome | 7.10e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.85e-13 | 14 |
musculoskeletal system disease | 9.21e-09 | 5 |
myotonic disease | 9.21e-09 | 5 |
muscle tissue disease | 9.21e-09 | 5 |
myopathy | 9.21e-09 | 5 |
muscular disease | 9.21e-09 | 5 |
myotonic dystrophy | 9.21e-09 | 5 |