FFCP PHASE1:Hg19::chr1:2360057..2360066,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C564 | |||
|description=CAGE_peak_at_chr1:2360057..2360066,+ | |||
|id=chr1:2360057..2360066,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.95e-36!43;CL:0000223!1.88e-27!59;CL:0002368!3.78e-27!13;CL:0002159!9.04e-22!13;CL:0000066!7.75e-21!254;CL:0000622!5.31e-19!5;CL:0000244!6.14e-16!4;CL:0000731!6.14e-16!4;CL:0000154!8.77e-16!6;CL:0002251!1.71e-15!21;CL:0002202!2.03e-14!9;CL:0002632!2.03e-14!9;CL:0002623!2.66e-12!3;CL:0002328!5.40e-12!3;CL:0002621!6.27e-12!3;CL:0000068!1.05e-11!3;CL:0000069!1.05e-11!3;CL:0000307!1.05e-11!3;CL:0000377!1.05e-11!3;CL:0000362!1.37e-11!8;CL:0002077!1.73e-11!33;CL:0000220!9.75e-11!246;CL:0002321!1.39e-10!248;CL:0000150!2.08e-10!9;CL:0000240!4.35e-10!6;CL:0000311!4.35e-10!6;CL:0000079!4.35e-10!6;CL:0000237!4.35e-10!6;CL:0000036!4.35e-10!6;CL:0000357!4.35e-10!6;CL:0000114!4.35e-10!6;CL:0002327!3.50e-09!4;CL:0000317!2.01e-08!2;CL:1000448!2.01e-08!2;CL:0002308!2.01e-08!2;CL:0002140!2.01e-08!2;CL:0000575!4.19e-08!2;CL:0000312!2.26e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.53e-29;13!CL:0002076;2.03e-26;42!CL:0000244;6.75e-25;4!CL:0000731;6.75e-25;4!CL:0000622;2.89e-20;5!CL:0002623;2.35e-19;3!CL:0002621;1.95e-18;3!CL:0000154;6.39e-17;6!CL:0002159;2.59e-15;14!CL:0002327;5.65e-14;4!CL:0000150;2.49e-11;9!CL:0002202;3.62e-11;9!CL:0002632;3.62e-11;9!CL:0002251;1.88e-10;20!CL:0002231;2.23e-09;3!CL:0002328;3.04e-09;3!CL:0002166;3.97e-09;3!CL:0000307;3.97e-09;3!CL:0002077;7.54e-09;34!CL:0000362;9.09e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.33e-34,42;CL:0002368,7.34e-29,13;CL:0000244,4.02e-25,4;CL:0000731,4.02e-25,4;CL:0000223,1.44e-23,58;CL:0000066,8.96e-21,253;CL:0000622,4.20e-20,5;CL:0002623,3.75e-19,3;CL:0002621,1.53e-18,3;CL:0000154,8.71e-17,6;CL:0002159,2.63e-15,14;CL:0002327,2.87e-14,4;CL:0000150,3.05e-11,9;CL:0002202,4.79e-11,9;CL:0002632,4.79e-11,9;CL:0002251,2.01e-10,20;CL:0002077,2.09e-10,34;CL:0002321,3.75e-10,250;CL:0002231,2.24e-09,3;CL:0002166,2.87e-09,3;CL:0002328,3.38e-09,3;CL:0000068,5.51e-09,3;CL:0000069,5.51e-09,3;CL:0000307,5.51e-09,3;CL:0000377,5.51e-09,3;CL:0000362,9.01e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;8.85e-14;58!CL:0000377;3.97e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!1.72e-15!72;UBERON:0004119!3.98e-13!169;UBERON:0000925!3.98e-13!169;UBERON:0006595!3.98e-13!169;UBERON:0000365!9.29e-13!5;UBERON:0007196!5.31e-12!14;UBERON:0001558!5.31e-12!14;UBERON:0004815!5.40e-12!3;UBERON:0002031!5.40e-12!3;UBERON:0001949!6.27e-12!3;UBERON:0005910!1.24e-10!6;UBERON:0000161!1.57e-10!35;UBERON:0000166!4.99e-10!21;UBERON:0003102!2.53e-09!95;UBERON:0001911!3.50e-09!4;UBERON:0005333!3.50e-09!4;UBERON:0008425!3.50e-09!4;UBERON:0005311!3.50e-09!4;UBERON:0002185!4.24e-09!4;UBERON:0000165!5.07e-09!28;UBERON:0000930!5.07e-09!28;UBERON:0000065!8.75e-09!53;UBERON:0003126!1.81e-08!7;UBERON:0001005!1.81e-08!7;UBERON:0002419!2.01e-08!2;UBERON:0007771!2.01e-08!2;UBERON:0003297!2.01e-08!2;UBERON:0001821!2.01e-08!2;UBERON:0003487!2.01e-08!2;UBERON:0001820!2.01e-08!2;UBERON:0005089!2.01e-08!2;UBERON:0005088!2.01e-08!2;UBERON:0001444!5.89e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;4.70e-31;12!UBERON:0000365;5.75e-20;5!UBERON:0001949;1.95e-18;3!UBERON:0005910;1.13e-16;6!UBERON:0001911;5.65e-14;4!UBERON:0000161;4.97e-11;19!UBERON:0000166;4.97e-11;19!UBERON:0001044;6.15e-10;6!UBERON:0003293;6.15e-10;6!UBERON:0003294;6.15e-10;6!UBERON:0010047;6.15e-10;6!UBERON:0003408;6.15e-10;6!UBERON:0000167;6.15e-10;6!UBERON:0005911;1.36e-09;36!UBERON:0004815;3.04e-09;3!UBERON:0002031;3.04e-09;3!UBERON:0002365;1.10e-08;31!UBERON:0002330;1.10e-08;31!UBERON:0003929;3.36e-08;7!UBERON:0001004;2.10e-07;65!UBERON:0000165;2.63e-07;28!UBERON:0003350;3.13e-07;8!UBERON:0001828;3.13e-07;8!UBERON:0001708;4.76e-07;4!UBERON:0008895;4.76e-07;4!UBERON:0010371;8.80e-07;31!UBERON:0007196;9.79e-07;15!UBERON:0001558;9.79e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,3.81e-20,5;UBERON:0001949,1.53e-18,3;UBERON:0005910,8.03e-17,6;UBERON:0001911,2.87e-14,4;UBERON:0005333,2.87e-14,4;UBERON:0008425,2.87e-14,4;UBERON:0005311,2.87e-14,4;UBERON:0001004,3.04e-13,74;UBERON:0004119,4.94e-11,160;UBERON:0000925,4.94e-11,160;UBERON:0006595,4.94e-11,160;UBERON:0001044,7.73e-10,6;UBERON:0003293,7.73e-10,6;UBERON:0003294,7.73e-10,6;UBERON:0010047,7.73e-10,6;UBERON:0000167,7.73e-10,6;UBERON:0000161,1.00e-09,36;UBERON:0000166,1.99e-09,22;UBERON:0003102,2.79e-09,99;UBERON:0004815,3.38e-09,3;UBERON:0002031,3.38e-09,3;UBERON:0002365,7.31e-09,31;UBERON:0002330,7.31e-09,31;UBERON:0000076,2.25e-07,8;UBERON:0000033,2.61e-07,56;UBERON:0005153,2.63e-07,37;UBERON:0003350,2.87e-07,8;UBERON:0001828,2.87e-07,8;UBERON:0001708,3.74e-07,4;UBERON:0008895,3.74e-07,4;UBERON:0005157,3.77e-07,47;UBERON:0005911,4.91e-07,82;UBERON:0000165,5.12e-07,29;UBERON:0000930,5.12e-07,29;UBERON:0002530,5.24e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,3.31326510656075,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,1.90922284413584,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64625428112938,3.37205259772859,0.904760751704678,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84780341018745,2.55195175036296,1.70161193135412,1.74380363108377,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80709058424599,2.02578175658972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,0.650060246036521,0,0,0,0,0,0,0,0,0,1.15699440752685,2.49847087574638,11.357531412018,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64647446479951,0,0,0.673554789078584,1.34060455107157,2.17781969722645,0,2.58303223602738,1.68471475667626,3.10401107475673,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0.41827123283581,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41416420770077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09819261579167,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588886311006154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,2.27937780579341,3.0729325876911,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.336760265072938,0.502055437748735,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:2360057..2360066,+ | |||
}} |
Revision as of 15:55, 10 January 2014
Short description: | p@chr1:2360057..2360066, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:2360057..2360066, + |
Coexpression cluster: | C564_Small_salivary_Corneal_Bronchial_Urothelial_Keratinocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.33e-34 | 42 |
respiratory epithelial cell | 7.34e-29 | 13 |
transitional epithelial cell | 4.02e-25 | 4 |
urothelial cell | 4.02e-25 | 4 |
endodermal cell | 1.44e-23 | 58 |
epithelial cell | 8.96e-21 | 253 |
acinar cell | 4.20e-20 | 5 |
acinar cell of salivary gland | 3.75e-19 | 3 |
gingival epithelial cell | 1.53e-18 | 3 |
protein secreting cell | 8.71e-17 | 6 |
general ecto-epithelial cell | 2.63e-15 | 14 |
mammary gland epithelial cell | 2.87e-14 | 4 |
glandular epithelial cell | 3.05e-11 | 9 |
epithelial cell of tracheobronchial tree | 4.79e-11 | 9 |
epithelial cell of lower respiratory tract | 4.79e-11 | 9 |
epithelial cell of alimentary canal | 2.01e-10 | 20 |
ecto-epithelial cell | 2.09e-10 | 34 |
embryonic cell | 3.75e-10 | 250 |
epithelial cell of prostate | 2.24e-09 | 3 |
epithelial cell of Malassez | 2.87e-09 | 3 |
bronchial epithelial cell | 3.38e-09 | 3 |
duct epithelial cell | 5.51e-09 | 3 |
branched duct epithelial cell | 5.51e-09 | 3 |
tracheal epithelial cell | 5.51e-09 | 3 |
tracheoblast | 5.51e-09 | 3 |
epidermal cell | 9.01e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
urothelium | 3.81e-20 | 5 |
gingival epithelium | 1.53e-18 | 3 |
transitional epithelium | 8.03e-17 | 6 |
mammary gland | 2.87e-14 | 4 |
mammary bud | 2.87e-14 | 4 |
mammary ridge | 2.87e-14 | 4 |
mammary placode | 2.87e-14 | 4 |
respiratory system | 3.04e-13 | 74 |
endoderm-derived structure | 4.94e-11 | 160 |
endoderm | 4.94e-11 | 160 |
presumptive endoderm | 4.94e-11 | 160 |
saliva-secreting gland | 7.73e-10 | 6 |
gland of oral region | 7.73e-10 | 6 |
gland of foregut | 7.73e-10 | 6 |
oral gland | 7.73e-10 | 6 |
oral cavity | 7.73e-10 | 6 |
orifice | 1.00e-09 | 36 |
oral opening | 1.99e-09 | 22 |
surface structure | 2.79e-09 | 99 |
lower respiratory tract epithelium | 3.38e-09 | 3 |
epithelium of bronchus | 3.38e-09 | 3 |
exocrine gland | 7.31e-09 | 31 |
exocrine system | 7.31e-09 | 31 |
external ectoderm | 2.25e-07 | 8 |
head | 2.61e-07 | 56 |
epithelial bud | 2.63e-07 | 37 |
epithelium of mucosa | 2.87e-07 | 8 |
gingiva | 2.87e-07 | 8 |
jaw skeleton | 3.74e-07 | 4 |
splanchnocranium | 3.74e-07 | 4 |
epithelial fold | 3.77e-07 | 47 |
endo-epithelium | 4.91e-07 | 82 |
mouth | 5.12e-07 | 29 |
stomodeum | 5.12e-07 | 29 |
gland | 5.24e-07 | 59 |