FFCP PHASE1:Hg19::chr20:49727891..49727898,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C150 | |||
|description=CAGE_peak_at_chr20:49727891..49727898,- | |||
|id=chr20:49727891..49727898,- | |||
|ontology_enrichment_celltype=CL:0000242!8.99e-131!2;CL:0000312!2.87e-53!5;CL:0000240!1.22e-44!6;CL:0000311!1.22e-44!6;CL:0000079!1.22e-44!6;CL:0000237!1.22e-44!6;CL:0000036!1.22e-44!6;CL:0000357!1.22e-44!6;CL:0000114!1.22e-44!6;CL:0000362!7.68e-34!8;CL:0002159!2.40e-21!13;CL:0000095!5.27e-15!17;CL:0000123!5.27e-15!17;CL:0000035!2.58e-14!20;CL:0002319!6.56e-11!25;CL:0002077!3.95e-09!33;CL:0000325!6.83e-08!39;CL:0000333!2.95e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0000123;6.43e-131;2!CL:0000242;6.43e-131;2!CL:0000312;2.51e-53;5!CL:0000240;1.09e-44;6!CL:0000311;1.09e-44;6!CL:0000079;1.09e-44;6!CL:0000237;1.09e-44;6!CL:0000362;2.87e-30;9!CL:0002159;6.18e-20;14!CL:0000095;5.09e-15;17!CL:0002319;6.40e-11;25!CL:0002077;1.23e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,8.99e-131,2;CL:0000312,2.87e-53,5;CL:0000240,1.22e-44,6;CL:0000311,1.22e-44,6;CL:0000079,1.22e-44,6;CL:0000237,1.22e-44,6;CL:0000036,1.22e-44,6;CL:0000357,1.22e-44,6;CL:0000114,1.22e-44,6;CL:0000362,3.09e-30,9;CL:0002159,6.48e-20,14;CL:0000095,5.27e-15,17;CL:0000123,5.27e-15,17;CL:0002319,6.56e-11,25;CL:0002077,6.80e-09,34;CL:0000333,2.95e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000357;1.09e-44;6!CL:0000114;1.09e-44;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001003!6.48e-20!14;UBERON:0007376!6.48e-20!14;UBERON:0007383!6.48e-20!14;UBERON:0002097!1.01e-07!40;UBERON:0002199!5.58e-07!45;UBERON:0002416!5.58e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.08e-18;15!UBERON:0007376;1.08e-18;15!UBERON:0010371;2.73e-09;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.13e-18,15;UBERON:0007376,1.13e-18,15;UBERON:0007383,1.13e-18,15;UBERON:0002097,1.47e-07,41;UBERON:0002199,7.52e-07,46;UBERON:0002416,7.52e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72371686620732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.1384009496959,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:49727891..49727898,- | |||
}} | |||
Revision as of 12:07, 21 January 2014
| Short description: | p@chr20:49727891..49727898, - |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | No |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr20:49727891..49727898, - |
| Coexpression cluster: | C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| Merkel cell | 8.99e-131 | 2 |
| keratinocyte | 2.87e-53 | 5 |
| stratified squamous epithelial cell | 1.22e-44 | 6 |
| keratin accumulating cell | 1.22e-44 | 6 |
| stratified epithelial cell | 1.22e-44 | 6 |
| keratinizing barrier epithelial cell | 1.22e-44 | 6 |
| epithelial fate stem cell | 1.22e-44 | 6 |
| stratified epithelial stem cell | 1.22e-44 | 6 |
| surface ectodermal cell | 1.22e-44 | 6 |
| epidermal cell | 3.09e-30 | 9 |
| general ecto-epithelial cell | 6.48e-20 | 14 |
| neuron associated cell | 5.27e-15 | 17 |
| neuron associated cell (sensu Vertebrata) | 5.27e-15 | 17 |
| neural cell | 6.56e-11 | 25 |
| ecto-epithelial cell | 6.80e-09 | 34 |
| migratory neural crest cell | 2.95e-07 | 41 |
| Ontology term | p-value | n |
|---|---|---|
| skin epidermis | 1.13e-18 | 15 |
| outer epithelium | 1.13e-18 | 15 |
| enveloping layer of ectoderm | 1.13e-18 | 15 |
| skin of body | 1.47e-07 | 41 |
| integument | 7.52e-07 | 46 |
| integumental system | 7.52e-07 | 46 |
