FFCP PHASE1:Hg19::chr20:60953877..60953897,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_at_chr20:60953877..60953897,- | |||
|id=chr20:60953877..60953897,- | |||
|ontology_enrichment_celltype=CL:0002076!1.59e-40!43;CL:0000223!9.36e-32!59;CL:0002368!2.56e-27!13;CL:0000066!3.08e-23!254;CL:0002202!1.29e-17!9;CL:0002632!1.29e-17!9;CL:0002251!1.84e-15!21;CL:0002159!4.50e-15!13;CL:0000622!1.35e-13!5;CL:0000244!1.42e-11!4;CL:0000731!1.42e-11!4;CL:0000154!2.97e-11!6;CL:0000150!4.60e-10!9;CL:0000220!2.45e-09!246;CL:0002321!3.55e-09!248;CL:0002621!4.71e-09!3;CL:0002328!7.18e-09!3;CL:0000076!7.35e-09!62;CL:0000068!9.56e-09!3;CL:0000069!9.56e-09!3;CL:0000307!9.56e-09!3;CL:0000377!9.56e-09!3;CL:0002623!1.12e-08!3;CL:0002166!2.94e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.44e-33;42!CL:0002368;1.23e-26;13!CL:0002251;7.33e-21;20!CL:0000622;2.79e-18;5!CL:0002621;3.24e-17;3!CL:0000154;2.90e-15;6!CL:0002159;8.63e-14;14!CL:0000244;1.13e-13;4!CL:0000731;1.13e-13;4!CL:0000317;2.22e-12;2!CL:1000448;2.22e-12;2!CL:0002308;2.22e-12;2!CL:0002140;2.22e-12;2!CL:0000575;8.09e-12;2!CL:0002202;2.23e-10;9!CL:0002632;2.23e-10;9!CL:0000150;3.20e-10;9!CL:0002328;8.72e-09;3!CL:0000307;2.08e-08;3!CL:0002623;2.08e-08;3!CL:0002252;9.77e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.67e-43,42;CL:0000223,2.26e-30,58;CL:0002368,8.46e-27,13;CL:0002251,7.10e-21,20;CL:0000066,1.76e-19,253;CL:0000622,3.50e-18,5;CL:0002621,1.61e-17,3;CL:0000154,3.50e-15,6;CL:0000244,8.60e-14,4;CL:0000731,8.60e-14,4;CL:0002159,8.85e-14,14;CL:0000317,2.79e-12,2;CL:1000448,2.79e-12,2;CL:0002308,2.79e-12,2;CL:0002140,2.79e-12,2;CL:0000575,6.86e-12,2;CL:0002202,2.12e-10,9;CL:0002632,2.12e-10,9;CL:0000150,3.62e-10,9;CL:0002321,1.73e-09,250;CL:0002328,7.21e-09,3;CL:0002623,2.16e-08,3;CL:0000068,2.33e-08,3;CL:0000069,2.33e-08,3;CL:0000307,2.33e-08,3;CL:0000377,2.33e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.04e-15;58!CL:0000377;2.08e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!2.23e-13!14 | |||
|ontology_enrichment_disease_v019=DOID:3112;2.58e-07;1!DOID:3151;9.77e-07;1!DOID:3149;9.77e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,2.82e-07,1;DOID:3151,7.15e-07,1;DOID:3149,7.15e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.45e-17!72;UBERON:0004119!1.16e-13!169;UBERON:0000925!1.16e-13!169;UBERON:0006595!1.16e-13!169;UBERON:0007196!1.71e-13!14;UBERON:0001558!1.71e-13!14;UBERON:0000166!4.26e-13!21;UBERON:0000161!3.47e-11!35;UBERON:0000065!3.53e-11!53;UBERON:0000165!6.41e-11!28;UBERON:0000930!6.41e-11!28;UBERON:0005157!8.17e-10!51;UBERON:0000365!3.08e-09!5;UBERON:0001949!4.71e-09!3;UBERON:0004815!7.18e-09!3;UBERON:0002031!7.18e-09!3;UBERON:0003729!1.14e-08!5;UBERON:0001444!1.25e-08!48;UBERON:0005153!1.91e-08!37;UBERON:0005178!3.75e-08!34;UBERON:0002224!3.75e-08!34;UBERON:0005181!7.62e-08!35;UBERON:0005910!1.12e-07!6;UBERON:0003102!1.49e-07!95;UBERON:0001007!1.65e-07!155;UBERON:0001555!1.65e-07!155;UBERON:0007026!1.65e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;1.77e-17;19!UBERON:0000166;1.77e-17;19!UBERON:0001949;3.24e-17;3!UBERON:0000486;1.74e-16;12!UBERON:0003729;8.33e-15;13!UBERON:0003343;4.74e-13;4!UBERON:0004785;4.74e-13;4!UBERON:0002419;2.22e-12;2!UBERON:0007771;2.22e-12;2!UBERON:0003297;2.22e-12;2!UBERON:0001821;2.22e-12;2!UBERON:0003487;2.22e-12;2!UBERON:0001820;2.22e-12;2!UBERON:0000165;1.76e-11;28!UBERON:0000365;4.91e-11;5!UBERON:0000344;1.97e-09;20!UBERON:0005910;2.85e-09;6!UBERON:0000974;7.29e-09;6!UBERON:0004815;8.72e-09;3!UBERON:0002031;8.72e-09;3!UBERON:0005911;6.03e-08;36!UBERON:0001004;7.40e-08;65!UBERON:0003929;1.16e-07;7!UBERON:0003350;9.35e-07;8!UBERON:0001828;9.35e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.61e-17,3;UBERON:0001004,6.14e-16,74;UBERON:0000166,5.63e-15,22;UBERON:0003729,7.19e-15,13;UBERON:0003343,6.22e-13,4;UBERON:0004785,6.22e-13,4;UBERON:0002419,2.79e-12,2;UBERON:0007771,2.79e-12,2;UBERON:0003297,2.79e-12,2;UBERON:0001821,2.79e-12,2;UBERON:0003487,2.79e-12,2;UBERON:0001820,2.79e-12,2;UBERON:0005089,2.79e-12,2;UBERON:0005088,2.79e-12,2;UBERON:0004119,3.79e-12,160;UBERON:0000925,3.79e-12,160;UBERON:0006595,3.79e-12,160;UBERON:0000365,3.95e-11,5;UBERON:0000165,4.48e-11,29;UBERON:0000930,4.48e-11,29;UBERON:0000161,6.34e-11,36;UBERON:0003102,7.32e-11,99;UBERON:0000033,8.27e-10,56;UBERON:0001444,1.73e-09,49;UBERON:0000344,1.79e-09,20;UBERON:0005910,2.38e-09,6;UBERON:0004815,7.21e-09,3;UBERON:0002031,7.21e-09,3;UBERON:0000153,1.15e-08,62;UBERON:0007811,1.15e-08,62;UBERON:0000065,6.00e-07,54;UBERON:0003350,7.27e-07,8;UBERON:0001828,7.27e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,2.09340350391728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,2.71085326900425,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,1.90922284413584,2.58124135850103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96325770603289,0,0.804231779293047,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,1.27597587518148,0.447792613514241,2.03443756959773,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,3.44559322797703,1.30012049207304,0,0,0.154048617114644,0,0,0,0,0,0,1.65284915360978,2.69066094311149,2.93509238737543,1.31505115112215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,1.34060455107157,2.17781969722645,0,1.72202149068492,3.36942951335251,4.43430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796554137998498,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,0.0769502585037971,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.694238953340524,0.489961987071888,0.522355239482415,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12124631155116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0,0,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0.138348634936231,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47221577751538,0,2.56800037930351,1.03973099535304,0,0,0,0,0,0,0.261906694481422,3.11166643269184,0,0,0,0,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.62164849248911,2.21934020222135,1.38251932362818,0,0,0,0,1.14553434272025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0.357107877211315,4.2347384605883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.870866991587845,0,0.5388164241167,0.430333232356058,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr20:60953877..60953897,- | |||
}} | |||
Revision as of 12:39, 21 January 2014
| Short description: | p@chr20:60953877..60953897, - |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | No |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr20:60953877..60953897, - |
| Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 1.67e-43 | 42 |
| endodermal cell | 2.26e-30 | 58 |
| respiratory epithelial cell | 8.46e-27 | 13 |
| epithelial cell of alimentary canal | 7.10e-21 | 20 |
| epithelial cell | 1.76e-19 | 253 |
| acinar cell | 3.50e-18 | 5 |
| gingival epithelial cell | 1.61e-17 | 3 |
| protein secreting cell | 3.50e-15 | 6 |
| transitional epithelial cell | 8.60e-14 | 4 |
| urothelial cell | 8.60e-14 | 4 |
| general ecto-epithelial cell | 8.85e-14 | 14 |
| sebum secreting cell | 2.79e-12 | 2 |
| epithelial cell of sweat gland | 2.79e-12 | 2 |
| epithelial cell of skin gland | 2.79e-12 | 2 |
| acinar cell of sebaceous gland | 2.79e-12 | 2 |
| corneal epithelial cell | 6.86e-12 | 2 |
| epithelial cell of tracheobronchial tree | 2.12e-10 | 9 |
| epithelial cell of lower respiratory tract | 2.12e-10 | 9 |
| glandular epithelial cell | 3.62e-10 | 9 |
| embryonic cell | 1.73e-09 | 250 |
| bronchial epithelial cell | 7.21e-09 | 3 |
| acinar cell of salivary gland | 2.16e-08 | 3 |
| duct epithelial cell | 2.33e-08 | 3 |
| branched duct epithelial cell | 2.33e-08 | 3 |
| tracheal epithelial cell | 2.33e-08 | 3 |
| tracheoblast | 2.33e-08 | 3 |
| Ontology term | p-value | n |
|---|---|---|
| gingival epithelium | 1.61e-17 | 3 |
| respiratory system | 6.14e-16 | 74 |
| oral opening | 5.63e-15 | 22 |
| mouth mucosa | 7.19e-15 | 13 |
| mucosa of oral region | 6.22e-13 | 4 |
| respiratory system mucosa | 6.22e-13 | 4 |
| skin gland | 2.79e-12 | 2 |
| epidermis gland | 2.79e-12 | 2 |
| gland of integumental system | 2.79e-12 | 2 |
| sebaceous gland | 2.79e-12 | 2 |
| skin sebaceous gland | 2.79e-12 | 2 |
| sweat gland | 2.79e-12 | 2 |
| sweat gland placode | 2.79e-12 | 2 |
| sebaceous gland placode | 2.79e-12 | 2 |
| endoderm-derived structure | 3.79e-12 | 160 |
| endoderm | 3.79e-12 | 160 |
| presumptive endoderm | 3.79e-12 | 160 |
| urothelium | 3.95e-11 | 5 |
| mouth | 4.48e-11 | 29 |
| stomodeum | 4.48e-11 | 29 |
| orifice | 6.34e-11 | 36 |
| surface structure | 7.32e-11 | 99 |
| head | 8.27e-10 | 56 |
| subdivision of head | 1.73e-09 | 49 |
| mucosa | 1.79e-09 | 20 |
| transitional epithelium | 2.38e-09 | 6 |
| lower respiratory tract epithelium | 7.21e-09 | 3 |
| epithelium of bronchus | 7.21e-09 | 3 |
| anterior region of body | 1.15e-08 | 62 |
| craniocervical region | 1.15e-08 | 62 |
| respiratory tract | 6.00e-07 | 54 |
| epithelium of mucosa | 7.27e-07 | 8 |
| gingiva | 7.27e-07 | 8 |
| Ontology term | p-value | n |
|---|---|---|
| papillary adenocarcinoma | 2.82e-07 | 1 |
| skin squamous cell carcinoma | 7.15e-07 | 1 |
| keratoacanthoma | 7.15e-07 | 1 |
