FFCP PHASE1:Hg19::chr21:47283543..47283583,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_at_chr21:47283543..47283583,+ | |||
|id=chr21:47283543..47283583,+ | |||
|ontology_enrichment_celltype=CL:0000080!2.59e-20!6;CL:0000842!1.62e-18!3;CL:0002127!5.42e-15!1;CL:0000914!5.42e-15!1;CL:0000911!5.42e-15!1;CL:0000814!5.42e-15!1;CL:0002042!5.42e-15!1;CL:0002039!5.42e-15!1;CL:0002040!5.42e-15!1;CL:0002041!5.42e-15!1;CL:0000224!3.85e-14!4;CL:0000893!3.82e-08!2;CL:0002489!3.82e-08!2;CL:0000809!3.82e-08!2;CL:0000808!3.82e-08!2;CL:0000894!3.82e-08!2;CL:0000806!3.82e-08!2;CL:0000807!3.82e-08!2;CL:0000805!3.82e-08!2;CL:0002425!3.82e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002127;2.58e-34;1!CL:0000911;2.58e-34;1!CL:0000814;2.58e-34;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,2.58e-34,1;CL:0000914,2.58e-34,1;CL:0000911,2.58e-34,1;CL:0000814,2.58e-34,1;CL:0002042,2.58e-34,1;CL:0002039,2.58e-34,1;CL:0002040,2.58e-34,1;CL:0002041,2.58e-34,1;CL:0000893,6.48e-18,2;CL:0002489,6.48e-18,2;CL:0000809,6.48e-18,2;CL:0000808,6.48e-18,2;CL:0000894,6.48e-18,2;CL:0000806,6.48e-18,2;CL:0000807,6.48e-18,2;CL:0000805,6.48e-18,2;CL:0002425,6.48e-18,2 | |||
|ontology_enrichment_development_v019=CL:0002425;6.48e-18;2!UBERON:0003056;2.31e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!8.13e-28!2;UBERON:0002757!8.13e-28!2;UBERON:0010134!8.13e-28!2;UBERON:0002784!8.13e-28!2;UBERON:0005408!8.13e-28!2;UBERON:0001899!8.13e-28!2;UBERON:0003296!1.97e-14!4;UBERON:0010133!1.97e-14!4;UBERON:0002372!2.41e-14!1;UBERON:0001961!2.41e-14!1;UBERON:0001744!2.41e-14!1;UBERON:0001735!2.41e-14!1;UBERON:0002370!3.16e-14!4;UBERON:0005058!3.16e-14!4;UBERON:0009113!3.16e-14!4;UBERON:0003295!3.16e-14!4;UBERON:0005562!3.16e-14!4;UBERON:0001042!1.82e-12!10;UBERON:0009145!1.82e-12!10;UBERON:0006562!2.18e-11!11;UBERON:0003351!8.48e-10!6;UBERON:0001894!1.22e-08!7;UBERON:0006222!1.22e-08!7;UBERON:0004177!1.59e-08!7;UBERON:0000178!1.73e-08!15;UBERON:0000179!1.73e-08!15;UBERON:0000463!1.73e-08!15;UBERON:0001557!8.12e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;7.73e-66;2!UBERON:0002757;7.73e-66;2!UBERON:0010134;7.73e-66;2!UBERON:0005408;7.73e-66;2!UBERON:0001899;7.73e-66;2!UBERON:0003296;1.38e-33;4!UBERON:0010133;1.38e-33;4!UBERON:0002784;1.38e-33;4!UBERON:0001894;1.04e-19;7!UBERON:0000966;6.13e-08;5!UBERON:0005388;6.13e-08;5!UBERON:0001802;6.13e-08;5!UBERON:0000970;1.21e-07;20!UBERON:0002104;2.52e-07;21!UBERON:0000020;9.13e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.73e-66,2;UBERON:0002757,7.73e-66,2;UBERON:0010134,7.73e-66,2;UBERON:0005408,7.73e-66,2;UBERON:0001899,7.73e-66,2;UBERON:0003296,1.38e-33,4;UBERON:0010133,1.38e-33,4;UBERON:0002784,1.38e-33,4;UBERON:0001894,1.04e-19,7;UBERON:0006222,1.04e-19,7;UBERON:0002370,1.22e-09,4;UBERON:0005058,1.22e-09,4;UBERON:0009113,1.22e-09,4;UBERON:0003295,1.22e-09,4;UBERON:0005562,1.22e-09,4;UBERON:0002368,3.15e-09,35;UBERON:0000949,2.49e-07,45;UBERON:0000970,2.52e-07,21;UBERON:0002104,2.52e-07,21;UBERON:0003351,7.58e-07,6;UBERON:0000966,8.02e-07,6;UBERON:0005388,8.02e-07,6;UBERON:0001802,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.2103911026019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23484860254418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.6142829706428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14280734351315,6.72567444437648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.9426274437603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr21:47283543..47283583,+ | |||
}} |
Revision as of 14:18, 21 January 2014
Short description: | p@chr21:47283543..47283583, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:47283543..47283583, + |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 2.58e-34 | 1 |
immature NK T cell | 2.58e-34 | 1 |
effector T cell | 2.58e-34 | 1 |
mature NK T cell | 2.58e-34 | 1 |
immature NK T cell stage IV | 2.58e-34 | 1 |
immature NK T cell stage I | 2.58e-34 | 1 |
immature NK T cell stage II | 2.58e-34 | 1 |
immature NK T cell stage III | 2.58e-34 | 1 |
thymocyte | 6.48e-18 | 2 |
double negative thymocyte | 6.48e-18 | 2 |
double-positive, alpha-beta thymocyte | 6.48e-18 | 2 |
DN4 thymocyte | 6.48e-18 | 2 |
DN1 thymic pro-T cell | 6.48e-18 | 2 |
DN2 thymocyte | 6.48e-18 | 2 |
DN3 thymocyte | 6.48e-18 | 2 |
immature single positive thymocyte | 6.48e-18 | 2 |
early T lineage precursor | 6.48e-18 | 2 |
Ontology term | p-value | n |
---|---|---|
pineal body | 7.73e-66 | 2 |
regional part of epithalamus | 7.73e-66 | 2 |
secretory circumventricular organ | 7.73e-66 | 2 |
circumventricular organ | 7.73e-66 | 2 |
epithalamus | 7.73e-66 | 2 |
gland of diencephalon | 1.38e-33 | 4 |
neuroendocrine gland | 1.38e-33 | 4 |
regional part of diencephalon | 1.38e-33 | 4 |
diencephalon | 1.04e-19 | 7 |
future diencephalon | 1.04e-19 | 7 |
thymus | 1.22e-09 | 4 |
hemolymphoid system gland | 1.22e-09 | 4 |
thymic region | 1.22e-09 | 4 |
pharyngeal gland | 1.22e-09 | 4 |
thymus primordium | 1.22e-09 | 4 |
endocrine gland | 3.15e-09 | 35 |
endocrine system | 2.49e-07 | 45 |
eye | 2.52e-07 | 21 |
visual system | 2.52e-07 | 21 |
pharyngeal epithelium | 7.58e-07 | 6 |
retina | 8.02e-07 | 6 |
photoreceptor array | 8.02e-07 | 6 |
posterior segment of eyeball | 8.02e-07 | 6 |