FFCP PHASE1:Hg19::chr2:220408260..220408340,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79586 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24291 | |||
|TSSclassifier=strong | |||
|UniProt=F8W6H2 | |||
|association_with_transcript=0bp_to_ENST00000373891_5end | |||
|coexpression_cluster_id=C4191 | |||
|description=CAGE_peak_2_at_CHPF_5end | |||
|id=chr2:220408260..220408340,- | |||
|ontology_enrichment_celltype=CL:0000055!1.44e-23!180;CL:0000220!9.24e-13!246;CL:0000183!1.34e-12!59;CL:0002321!1.61e-12!248;CL:0000680!1.62e-12!57;CL:0000056!1.62e-12!57;CL:0000355!1.62e-12!57;CL:0000192!2.63e-12!42;CL:0000514!2.63e-12!42;CL:0000187!1.06e-11!54;CL:0000393!1.99e-10!60;CL:0000211!1.99e-10!60;CL:0000359!4.76e-10!32;CL:0000057!2.25e-08!75;CL:0000066!4.69e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.20e-09;32!CL:0000192;5.02e-09;43!CL:0000349;5.12e-08;19!CL:0000134;5.41e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.04e-13,250;CL:0000680,1.71e-12,58;CL:0000056,1.71e-12,58;CL:0000355,1.71e-12,58;CL:0000192,3.12e-12,43;CL:0000514,3.12e-12,43;CL:0000187,1.13e-11,55;CL:0000393,2.01e-10,61;CL:0000211,2.01e-10,61;CL:0000359,4.25e-10,32;CL:0000057,7.99e-09,76;CL:0000349,5.50e-08,19;CL:0000066,2.03e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;5.02e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.72e-18!365;UBERON:0002100!1.69e-16!216;UBERON:0000481!6.26e-14!347;UBERON:0003104!1.47e-12!238;UBERON:0009142!1.47e-12!238;UBERON:0000486!1.49e-12!82;UBERON:0005256!3.38e-12!143;UBERON:0001134!1.15e-10!61;UBERON:0002036!1.15e-10!61;UBERON:0003082!1.15e-10!61;UBERON:0000914!1.26e-10!83;UBERON:0002329!1.26e-10!83;UBERON:0003077!1.26e-10!83;UBERON:0003059!1.26e-10!83;UBERON:0007282!1.26e-10!83;UBERON:0009618!1.26e-10!83;UBERON:0007285!1.26e-10!83;UBERON:0001048!1.59e-10!168;UBERON:0004290!2.73e-10!70;UBERON:0002385!7.61e-10!63;UBERON:0001015!7.61e-10!63;UBERON:0000383!7.61e-10!63;UBERON:0004923!5.42e-08!57;UBERON:0000119!6.74e-08!312;UBERON:0000483!7.92e-08!309;UBERON:0000466!9.44e-08!126;UBERON:0000478!1.20e-07!24;UBERON:0009569!2.10e-07!113;UBERON:0005631!3.26e-07!14;UBERON:0000158!3.26e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;9.05e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.24e-15,199;UBERON:0000486,1.54e-12,83;UBERON:0003104,2.89e-12,160;UBERON:0009142,2.89e-12,160;UBERON:0005256,4.46e-11,122;UBERON:0001134,1.26e-10,62;UBERON:0002036,1.26e-10,62;UBERON:0003082,1.26e-10,62;UBERON:0007524,1.82e-10,73;UBERON:0002329,2.88e-10,71;UBERON:0003059,2.88e-10,71;UBERON:0007282,2.88e-10,71;UBERON:0004290,2.88e-10,71;UBERON:0009618,2.88e-10,71;UBERON:0003077,4.81e-10,72;UBERON:0007285,4.81e-10,72;UBERON:0002385,8.20e-10,64;UBERON:0001015,8.20e-10,64;UBERON:0000383,8.20e-10,64;UBERON:0007503,1.20e-09,78;UBERON:0001048,4.43e-09,160;UBERON:0004923,1.28e-08,66;UBERON:0000119,5.03e-08,309;UBERON:0000483,5.91e-08,306;UBERON:0000478,1.10e-07,24;UBERON:0005631,3.02e-07,14;UBERON:0000158,3.02e-07,14;UBERON:0009569,3.83e-07,112 | |||
|phase1_expression=34.5188920614058,25.906163390809,32.7014217502653,42.0307853083148,22.3480547213644,45.3616032532192,22.796989035148,18.3198763293781,12.7980957817921,12.0409628885739,33.4944560626765,22.7179027015379,39.3012797560396,11.8815698841645,32.4769428213357,8.0679017574213,11.4511960324556,13.8758917173601,15.1259167625057,17.975674479211,28.7640974654397,25.3898324397251,13.4530913951597,9.44433533002901,16.3205431473244,2.36881557818649,2.21671591514854,1.96776953284198,0.393364276848904,0.383829398097213,0.77408061658038,24.824373060931,27.1085326900425,18.1179464981726,5.03536803771961,5.40243083452202,0.880801318004542,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27988733383968,1.09227722252426,0,0.853460445133014,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0.790152254325231,0.393419540227666,0,0.616804496998528,1.17030546773475,0.651844533267181,0,0,3.00808233589969,0.883817722424512,0.886135578334485,0.541607727530031,2.81800903396485,3.25148368899696,2.13769275984779,1.65810010671509,1.15921234294021,0.296573126324121,0,0,2.94604291013672,0.766440987203842,1.03088233644789,0,0.637130828648193,0.651083453856419,0,0.602300476311091,0.127986611154418,0,0.710331756132051,0.821127996921047,0.80642697289893,1.60464117470104,0.579297615531196,7.31420598941885,14.75541891348,21.9923606370872,16.9876401620746,11.0294340339896,17.0918892373772,7.15757352345989,23.3584737745265,13.5184788544617,19.9556457716308,22.1343659946678,7.72776545436505,26.9578513336481,15.9437310397305,0.649094787309367,0.348259474598534,1.59549552622638,7.63169997777094,5.14795419702115,2.22874500797739,0,2.58070378531837,0,0,0,0,0,0,0,0.33472061276467,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,21.8047026071267,42.2426158941021,17.7282716330412,21.7151056533679,37.001924076597,14.5414036701326,22.4271040056923,7.47242970107935,31.8201137458136,15.8717628053881,5.92726957106628,5.5577047058576,19.3737507385512,17.86145365888,6.56100009134631,19.3539247634799,7.98660550162229,11.8064457635923,3.87533845524424,1.29498355494505,2.66856532734272,6.73708765141148,4.91337269247072,8.16273671288547,19.0080457165129,17.308685049499,13.6524204290704,41.6798522253418,3.53505839303539,2.75260743718321,4.71008996323111,7.02364193409341,6.43624371177941,25.5404700141215,4.65071950956086,13.4542226766646,7.901623386287,7.41761654058466,21.606558918077,5.77094163735258,14.4278702425552,18.2394519204958,30.2109634711867,13.6411807225678,7.82544700156755,6.71964260088785,9.21382523867228,35.1459496591448,10.5789703139022,11.3605596848027,22.9980415264323,19.9104668031309,18.3554941048962,4.51302712679503,4.24095258628753,3.71820617182459,5.59769697083,4.54177531576131,2.18986415445498,10.9514672630871,30.8755650332585,9.66944449467364,16.7172454091512,20.2126254867484,5.56041960187266,6.06904884281166,6.98931986662098,5.62499260935209,6.53638332277218,7.1181185733329,5.52808363456674,5.69042248863504,6.92544882503503,0,14.0241773803446,28.3986067818666,45.572700529518,8.87285243752816,11.7939266001315,10.0434284135839,1.7658523976586,4.67356066463832,35.6861045420933,17.6697959507887,12.3641928583382,10.9576579928678,7.87001783847502,10.1000574646201,19.758760920312,18.7630744632855,15.6506046716354,31.2307126667286,0.144366447761074,0,0,7.11183958163348,11.1603201072333,0.492434012174795,0.234004265139238,0.891786973732369,14.0600750980165,14.1104987687042,9.78248170972467,13.7024539735358,9.30028603244678,28.7537009373908,0,2.81754988842323,1.03664057770386,2.88239906833923,1.8936365013957,7.61974731506028,31.705039321337,29.3043618025117,25.6608669034058,12.8534365879154,19.2219557020107,17.4354123904653,8.18556915721133,11.3349617896653,5.7203862940341,46.1500025255267,71.5312891703765,4.22651376278,27.1256878916568,34.3224541807508,7.45901385360212,15.6034045225606,8.79193190753128,17.443315226294,50.4638093014042,14.8183260620538,5.5375151329935,14.9264618471869,10.2953743481346,33.7612102306736,32.2467379682109,34.2907359754456,0,0.502257091432126,0,15.0963658959697,9.18895486672911,21.3955357561078,17.2289754934419,18.0819163844337,18.801401140189,3.81089489577993,0.788123040807709,2.37190332345469,1.28343036279748,10.1637849688985,5.20559415430487,4.63973287666617,6.70065061337395,5.74144876487847,0,0,0,12.5145321553523,15.50528615285,16.0046363982844,16.4296980609338,13.20374517099,16.4010511635292,10.8941515943223,9.32932909155929,38.6592756895174,30.0071906748264,13.2845119707087,20.8337160452125,8.16705975999979,38.7686291776226,42.2066411287353,0,0.862856803274467,0.640365346820666,25.4627160014858,51.5949862482541,31.7509807996164,40.6896804822794,26.2419974322587,37.3277925595988,38.4417447767103,31.2141421930689,37.3181097053169,74.2090332224955,10.3320494847779,21.3074070375752,12.8118363381542,11.9428518712233,15.3397699567146,5.55953468121462,42.50737170429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| |||
|short_description=p2@CHPF | |||
}} |
Revision as of 08:49, 21 January 2014
Short description: | p2@CHPF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHPF_5end |
Coexpression cluster: | C4191_Smooth_Mesenchymal_leiomyoma_Fibroblast_Preadipocyte_Adipocyte_Placental |
Association with transcript: | 0bp_to_ENST00000373891_5end |
EntrezGene: | CHPF |
HGNC: | 24291 |
UniProt: | F8W6H2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.04e-13 | 250 |
muscle precursor cell | 1.71e-12 | 58 |
myoblast | 1.71e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.71e-12 | 58 |
smooth muscle cell | 3.12e-12 | 43 |
smooth muscle myoblast | 3.12e-12 | 43 |
muscle cell | 1.13e-11 | 55 |
electrically responsive cell | 2.01e-10 | 61 |
electrically active cell | 2.01e-10 | 61 |
vascular associated smooth muscle cell | 4.25e-10 | 32 |
fibroblast | 7.99e-09 | 76 |
extraembryonic cell | 5.50e-08 | 19 |
epithelial cell | 2.03e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.24e-15 | 199 |
multilaminar epithelium | 1.54e-12 | 83 |
mesenchyme | 2.89e-12 | 160 |
entire embryonic mesenchyme | 2.89e-12 | 160 |
trunk mesenchyme | 4.46e-11 | 122 |
skeletal muscle tissue | 1.26e-10 | 62 |
striated muscle tissue | 1.26e-10 | 62 |
myotome | 1.26e-10 | 62 |
dense mesenchyme tissue | 1.82e-10 | 73 |
somite | 2.88e-10 | 71 |
presomitic mesoderm | 2.88e-10 | 71 |
presumptive segmental plate | 2.88e-10 | 71 |
dermomyotome | 2.88e-10 | 71 |
trunk paraxial mesoderm | 2.88e-10 | 71 |
paraxial mesoderm | 4.81e-10 | 72 |
presumptive paraxial mesoderm | 4.81e-10 | 72 |
muscle tissue | 8.20e-10 | 64 |
musculature | 8.20e-10 | 64 |
musculature of body | 8.20e-10 | 64 |
epithelial vesicle | 1.20e-09 | 78 |
primordium | 4.43e-09 | 160 |
organ component layer | 1.28e-08 | 66 |
cell layer | 5.03e-08 | 309 |
epithelium | 5.91e-08 | 306 |
extraembryonic structure | 1.10e-07 | 24 |
extraembryonic membrane | 3.02e-07 | 14 |
membranous layer | 3.02e-07 | 14 |
subdivision of trunk | 3.83e-07 | 112 |