FFCP PHASE1:Mm9::chr1:122237146..122237157,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=226359|HGNC=|MCL_coexpression_id=223|UniProt=Q8CFR0|association_with_transcript=-1bp_to_ENSMUST00000037286,NM_207233,uc007cjk.1_5end|description=CAGE_peak_3_at_C1ql2_5end|id=chr1:122237146..122237157,+|ontology_enrichment_celltype=CL:0000117!1.03e-11!23;CL:0000337!1.03e-11!23;CL:0000540!2.35e-11!33;CL:0000047!2.35e-11!33;CL:0000031!2.35e-11!33;CL:0000404!2.35e-11!33;CL:0002319!2.72e-10!43;CL:0000221!5.91e-10!44;CL:0000133!5.91e-10!44;CL:0000393!5.41e-09!39;CL:0000211!5.41e-09!39;CL:0000055!3.17e-08!50;CL:0000120!3.70e-07!3|ontology_enrichment_celltype_v019_2=CL:0000120,7.72e-14,3;CL:0002613,1.04e-13,3;CL:0000117,4.69e-07,23;CL:0000337,4.69e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.09e-14!75;UBERON:0001016!1.09e-14!75;UBERON:0004121!2.81e-14!102;UBERON:0000924!2.81e-14!102;UBERON:0006601!2.81e-14!102;UBERON:0001017!1.01e-12!73;UBERON:0005743!1.01e-12!73;UBERON:0002298!3.47e-11!6;UBERON:0000033!3.74e-10!63;UBERON:0002346!7.00e-10!71;UBERON:0003075!7.00e-10!71;UBERON:0007284!7.00e-10!71;UBERON:0003056!3.72e-09!49;UBERON:0001049!1.36e-08!52;UBERON:0005068!1.36e-08!52;UBERON:0006241!1.36e-08!52;UBERON:0007135!1.36e-08!52;UBERON:0002950!3.34e-08!4;UBERON:0001891!3.34e-08!4;UBERON:0009616!3.34e-08!4;UBERON:0002616!1.03e-07!49;UBERON:0000955!1.78e-07!50;UBERON:0006238!1.78e-07!50|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.92e-10,9;UBERON:0000019,1.92e-10,9;UBERON:0000047,1.92e-10,9;UBERON:0010312,1.92e-10,9;UBERON:0004088,1.92e-10,9;UBERON:0002104,1.92e-10,9;UBERON:0001456,1.92e-10,9;UBERON:0003072,1.92e-10,9;UBERON:0004128,1.92e-10,9;UBERON:0003071,1.92e-10,9;UBERON:0003056,1.24e-09,49;UBERON:0001444,1.18e-08,11;UBERON:0000369,1.31e-08,5;UBERON:0002435,1.31e-08,5;UBERON:0000204,1.31e-08,5;UBERON:0010082,1.31e-08,5;UBERON:0004121,4.90e-08,95;UBERON:0000924,4.90e-08,95;UBERON:0006601,4.90e-08,95;UBERON:0000020,5.55e-08,12;UBERON:0001032,5.55e-08,12;UBERON:0004456,5.55e-08,12;UBERON:0000033,2.06e-07,13;UBERON:0005085,2.06e-07,13;UBERON:0002346,2.57e-07,64;UBERON:0003075,2.57e-07,64;UBERON:0007284,2.57e-07,64|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0.893811366596314,0.921639199537461,1.18697658957174,1.55528994124096,0,0.837548997004143,0.56276261003168,0.61119299110724,0,0.142371680799103,0.186399445825301,0.227178579999552,0.982430281388212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599162557619291,0,0,0.347648640384553,0,1.87009240103604,0.486723789203273,0,0,0,0.631325567659422,0,0,0,0,1.02054748726992,2.0498195245576,3.09215691047105,0.776110112217047,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.8791366052324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.35163505977661,0,0,0,0,0,0.477937595905104,0.222798674082394,0.566153061577665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0.453142408984205,0,0,0,0.170733605754134,0,0.209613162627982,0,0,0,0.64183841918363,0,0,0,0,0.192075457214608,0.17230640686684,0.476293691283074,0.115884325944855,0.192909220463705,0,0,0,0.354951612318675,0,0.436039249896986,0,0.25384382367503,0,0,0.135804113845862,0,0,0,0,0,0,0.249810577937946,0,0.214871054048298,0,0,0|short_description=p3@C1ql2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:226359 | |||
|HGNC= | |||
|MCL_coexpression_id=223 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CFR0 | |||
|association_with_transcript=-1bp_to_ENSMUST00000037286,NM_207233,uc007cjk.1_5end | |||
|cluster_id=chr1:122237146..122237157,+ | |||
|description=CAGE_peak_3_at_C1ql2_5end | |||
|id=chr1:122237146..122237157,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.03e-11!23;CL:0000337!1.03e-11!23;CL:0000540!2.35e-11!33;CL:0000047!2.35e-11!33;CL:0000031!2.35e-11!33;CL:0000404!2.35e-11!33;CL:0002319!2.72e-10!43;CL:0000221!5.91e-10!44;CL:0000133!5.91e-10!44;CL:0000393!5.41e-09!39;CL:0000211!5.41e-09!39;CL:0000055!3.17e-08!50;CL:0000120!3.70e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,7.72e-14,3;CL:0002613,1.04e-13,3;CL:0000117,4.69e-07,23;CL:0000337,4.69e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.09e-14!75;UBERON:0001016!1.09e-14!75;UBERON:0004121!2.81e-14!102;UBERON:0000924!2.81e-14!102;UBERON:0006601!2.81e-14!102;UBERON:0001017!1.01e-12!73;UBERON:0005743!1.01e-12!73;UBERON:0002298!3.47e-11!6;UBERON:0000033!3.74e-10!63;UBERON:0002346!7.00e-10!71;UBERON:0003075!7.00e-10!71;UBERON:0007284!7.00e-10!71;UBERON:0003056!3.72e-09!49;UBERON:0001049!1.36e-08!52;UBERON:0005068!1.36e-08!52;UBERON:0006241!1.36e-08!52;UBERON:0007135!1.36e-08!52;UBERON:0002950!3.34e-08!4;UBERON:0001891!3.34e-08!4;UBERON:0009616!3.34e-08!4;UBERON:0002616!1.03e-07!49;UBERON:0000955!1.78e-07!50;UBERON:0006238!1.78e-07!50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.92e-10,9;UBERON:0000019,1.92e-10,9;UBERON:0000047,1.92e-10,9;UBERON:0010312,1.92e-10,9;UBERON:0004088,1.92e-10,9;UBERON:0002104,1.92e-10,9;UBERON:0001456,1.92e-10,9;UBERON:0003072,1.92e-10,9;UBERON:0004128,1.92e-10,9;UBERON:0003071,1.92e-10,9;UBERON:0003056,1.24e-09,49;UBERON:0001444,1.18e-08,11;UBERON:0000369,1.31e-08,5;UBERON:0002435,1.31e-08,5;UBERON:0000204,1.31e-08,5;UBERON:0010082,1.31e-08,5;UBERON:0004121,4.90e-08,95;UBERON:0000924,4.90e-08,95;UBERON:0006601,4.90e-08,95;UBERON:0000020,5.55e-08,12;UBERON:0001032,5.55e-08,12;UBERON:0004456,5.55e-08,12;UBERON:0000033,2.06e-07,13;UBERON:0005085,2.06e-07,13;UBERON:0002346,2.57e-07,64;UBERON:0003075,2.57e-07,64;UBERON:0007284,2.57e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0.893811366596314,0.921639199537461,1.18697658957174,1.55528994124096,0,0.837548997004143,0.56276261003168,0.61119299110724,0,0.142371680799103,0.186399445825301,0.227178579999552,0.982430281388212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599162557619291,0,0,0.347648640384553,0,1.87009240103604,0.486723789203273,0,0,0,0.631325567659422,0,0,0,0,1.02054748726992,2.0498195245576,3.09215691047105,0.776110112217047,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.8791366052324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.35163505977661,0,0,0,0,0,0.477937595905104,0.222798674082394,0.566153061577665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0.453142408984205,0,0,0,0.170733605754134,0,0.209613162627982,0,0,0,0.64183841918363,0,0,0,0,0.192075457214608,0.17230640686684,0.476293691283074,0.115884325944855,0.192909220463705,0,0,0,0.354951612318675,0,0.436039249896986,0,0.25384382367503,0,0,0.135804113845862,0,0,0,0,0,0,0.249810577937946,0,0.214871054048298,0,0,0 | |||
|short_description=p3@C1ql2 | |||
}} |
Revision as of 15:57, 4 August 2015
Short description: | p3@C1ql2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_C1ql2_5end |
Coexpression cluster: | MCL_coexpression_mm9:223 |
Association with transcript: | -1bp_to_ENSMUST00000037286, NM_207233, uc007cjk.1_5end |
EntrezGene: | 226359 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 7.72e-14 | 3 |
striatum neuron | 1.04e-13 | 3 |
CNS neuron (sensu Vertebrata) | 4.69e-07 | 23 |
neuroblast (sensu Vertebrata) | 4.69e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
eye | 1.92e-10 | 9 |
camera-type eye | 1.92e-10 | 9 |
simple eye | 1.92e-10 | 9 |
immature eye | 1.92e-10 | 9 |
ocular region | 1.92e-10 | 9 |
visual system | 1.92e-10 | 9 |
face | 1.92e-10 | 9 |
optic cup | 1.92e-10 | 9 |
optic vesicle | 1.92e-10 | 9 |
eye primordium | 1.92e-10 | 9 |
pre-chordal neural plate | 1.24e-09 | 49 |
subdivision of head | 1.18e-08 | 11 |
corpus striatum | 1.31e-08 | 5 |
striatum | 1.31e-08 | 5 |
ventral part of telencephalon | 1.31e-08 | 5 |
future corpus striatum | 1.31e-08 | 5 |
ectoderm-derived structure | 4.90e-08 | 95 |
ectoderm | 4.90e-08 | 95 |
presumptive ectoderm | 4.90e-08 | 95 |
sense organ | 5.55e-08 | 12 |
sensory system | 5.55e-08 | 12 |
entire sense organ system | 5.55e-08 | 12 |
head | 2.06e-07 | 13 |
ectodermal placode | 2.06e-07 | 13 |
neurectoderm | 2.57e-07 | 64 |
neural plate | 2.57e-07 | 64 |
presumptive neural plate | 2.57e-07 | 64 |