FFCP PHASE1:Hg19::chr9:102584128..102584144,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8013 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7982 | |||
|TSSclassifier=strong | |||
|UniProt=Q92570 | |||
|association_with_transcript=0bp_to_ENST00000338488,ENST00000395097,NM_006981,NM_173199,NM_173200,uc004bae.2,uc004baf.1,uc004bag.1_5end | |||
|coexpression_cluster_id=C2428 | |||
|description=CAGE_peak_3_at_NR4A3_5end | |||
|id=chr9:102584128..102584144,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.93e-26!140;CL:0000766!2.89e-25!76;CL:0000860!3.52e-24!45;CL:0002057!1.14e-23!42;CL:0000557!5.12e-22!71;CL:0002009!5.83e-20!65;CL:0000839!3.22e-19!70;CL:0002194!9.89e-19!63;CL:0000576!9.89e-19!63;CL:0000040!9.89e-19!63;CL:0000559!9.89e-19!63;CL:0002031!1.89e-17!124;CL:0002087!9.20e-17!119;CL:0000037!5.46e-16!172;CL:0000566!5.46e-16!172;CL:0000763!3.58e-14!112;CL:0000049!3.58e-14!112;CL:0002032!6.19e-14!165;CL:0000837!6.19e-14!165;CL:0000988!8.66e-14!182;CL:0000451!7.79e-08!10;CL:0000990!5.70e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.89e-21;33!CL:0002057;5.89e-21;33!CL:0000473;1.02e-16;39!CL:0000234;1.02e-16;39!CL:0000576;3.72e-13;48!CL:0000766;1.61e-12;69!CL:0000451;8.30e-09;10!CL:0000990;8.03e-08;8!CL:0000094;3.01e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.23e-28,72;CL:0000738,1.62e-27,136;CL:0000860,4.89e-27,42;CL:0002057,4.89e-27,42;CL:0000473,1.25e-25,48;CL:0000234,1.25e-25,48;CL:0000557,1.85e-24,67;CL:0002009,2.60e-22,61;CL:0000839,3.17e-21,66;CL:0002194,6.93e-21,59;CL:0000576,6.93e-21,59;CL:0000040,6.93e-21,59;CL:0000559,6.93e-21,59;CL:0002031,6.13e-18,120;CL:0000037,4.25e-17,168;CL:0002087,4.60e-17,115;CL:0000763,2.66e-16,108;CL:0000049,2.66e-16,108;CL:0000988,3.94e-15,177;CL:0002032,8.74e-15,161;CL:0000837,8.74e-15,161;CL:0000451,8.64e-09,10;CL:0000990,8.53e-08,8;CL:0000094,3.15e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;9.28e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.72e-17!80;UBERON:0001474!1.01e-16!86;UBERON:0004765!2.10e-15!101;UBERON:0001434!2.10e-15!101;UBERON:0002390!4.23e-14!102;UBERON:0003061!4.23e-14!102;UBERON:0002193!5.21e-10!112;UBERON:0002405!1.49e-08!115;UBERON:0007023!1.40e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.36e-20,76;UBERON:0001474,1.57e-18,82;UBERON:0002390,2.82e-16,98;UBERON:0003061,2.82e-16,98;UBERON:0001434,5.03e-15,100;UBERON:0002405,6.65e-15,93;UBERON:0004765,1.77e-14,90;UBERON:0002193,3.32e-12,108;UBERON:0007023,1.10e-07,114 | |||
|phase1_expression=1.45342703416445,1.07050261945492,0.845726424575827,0,0.446961094427288,0,2.53299878168311,0,1.82829939739887,0,0.697801167972428,0,0,0.618831764800233,0.994192127183747,0.672325146451775,0.602694528023977,0,0,0,0,0.313454721478088,0.85870796139317,0,0,0.534893840235659,0.656804715599566,0.787107813136792,79.4595839234786,20.3429580991523,17.3394058114005,0,0,0,0.0774672005803016,0.284338464974843,1.76160263600908,30.4697474692533,57.3557119764605,33.636684960957,0,0,0,6.10672602874172,9.06902264853143,8.49044214157357,41.1399395323062,56.3300006589901,55.1277340193284,35.0984718633024,33.5570525553122,27.9049031268531,116.17929440824,101.986580006245,89.3814811522656,37.6484679085209,37.3881425579249,26.7420946489651,140.186422705873,137.036694561492,142.572179053186,5.93732340336089,9.77371922345996,8.09827026012119,82.999842247775,87.3773246024355,82.8353591164115,44.973511080957,52.6697747604403,36.4877259104596,68.4101437975707,81.7576351892394,53.7986058649504,7.39393502091796,8.2915676986367,5.66078342872615,9.2109477540126,4.05477610672067,6.42902346788321,5.41524213108372,5.56966696157452,3.83594722905731,3.51992488922645,0,0,1.70692089026603,0,0.574752439954483,1.32208974556972,0.954053754535364,35.8604170538952,42.2810776347076,56.1941645344086,19.8256992868539,21.8598339562799,0.263384084775077,23.0150431033185,44.0172054279064,36.1858638239136,0,5.54067853277104,4.73447805734733,7.79306913631645,0.668462741311041,5.59751224202191,3.32300841875432,7.04090045789041,0.128091319725675,0.520237390239513,0.328875809207352,0.552700035571697,0.289803085735052,8.15576097391332,1.60524496853828,4.18142095219907,0.339928028092699,9.19729184644611,7.90343124610049,11.6389058328971,0,0,0,0.602300476311091,0,1.24930726552346,0,0,32.4586856591819,57.7670822892376,30.5579492192706,9.75227465255847,0.670700859703636,0.12786256184353,0.361439152384566,0.50133791063589,3.91085601194224,0,2.43317435151318,0.189069634328136,0.886917589850256,0.527008714158756,1.89919659471683,0,0,36.0247606956698,33.6070392987586,14.0935438149997,13.5939655854045,12.0118931263827,7.80060752792086,0,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0.805658634218294,0,0.732186172644509,0,1.62028389576352,0,0,0,0,0,0.183201743930407,109.377746471932,158.989908300813,0,0,0,0.662045904066094,1.43418310374407,1.41867352879343,0,1.06748995729705,0,0,0,0.163461903113459,0,0,0,0.624320153660641,0,1.19558944441441,0,0,0.140450806702248,3.47062091133319,9.82674538494144,9.91927499287348,2.37600571456411,7.66527480763526,0,0,4.54507507675979,4.37914819551875,2.49357703935765,0,0.919463387397059,9.16452159330241,0.113432183160021,2.15267562826634,0.427114777637135,1.69545520927649,0.600182192168805,0.515262646192195,0.515281080091258,0.18611685633159,0.843881661206331,0.487185025805993,1.51460264546469,2.39329736469978,1.13152239773168,1.06502877754984,0.201504196455281,0.339121184620975,0,0,0,0,0.132529768321485,0.464775771478074,0.932949495138334,0,0,0,0.643240938192885,1.38134921352481,1.39310378409594,0.721879481669586,1.41968160047813,1.51726221070292,2.16909926895134,1.43382164552112,1.74303555273925,0.474541238222193,3.37078270400411,4.70931516300831,2.30848294167834,0,0,0,0,0,0,1.18157981336281,2.20731549707325,0,0.343135620597051,0,0,0,0,0,1.03993478527958,0,0,0,0,0.462985512576611,0,0.790204397959275,0.858486162094873,0,5.14809383306323,1.33768046059855,0,0,0,0.447792613514241,0,0,518.281726266533,0.352193736052904,38.5630294905836,23.4915524069647,35.4741237928128,9.016700989488,16.8074907245642,1.17217447210047,8.55362230113526,13.2647465587287,7.50857644609794,8.86061941154792,0,0,0,0.387815147273333,0,0,0.26593811658487,0,0,0,0,1.14382394926518,0,0,0,0.710783897485092,0,0,0,0,1.2162378064119,1.00451418286425,6.32501818449095,0.718874566474748,1.14861935834114,0,0,0.205476322550383,0,3.81089489577993,28.1753987088756,53.0443834154413,33.1125033601751,0.254094624222463,5.20559415430487,2.31986643833309,2.34522771468088,1.91381625495949,37.4503511973591,56.8406772487647,67.5497286900738,0.49076596687656,0.500170521059677,0.271265023699736,4.57535895367776,5.70972764150918,3.78485796081443,2.81139395982512,0,0,2.0694614258501,0,0.921845842708516,0.434418072340414,0,0,11.5790094628817,37.7499851432579,28.2828028179127,0.303127571446259,0,0,0,0.460385919864187,0.561320188866147,0.640695746278505,0,0.321707842287215,0,0,0.177561725313127,0.246381468041427,0,0.232420756919918,0,0,0,0.114814448164607,0.182091168006717,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0,0,0,0,2.57602529119306,0.915694648183434,0.330037999682352,0,0,0,0,0,0,0,0.107420244868274,0.145016693914229,0.340906509664404,0.178064071293475,0,0,0,0.2023155617111,0.929691098594572,1.25924938732256,0.6970372701606,0.308033580176089,0,0.869932992075073,0.9266210955196,0.143124886741991,0.372158369359667,0,0,0,0.42793898803392,0.95460974377781,1.56989728039846,0,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0,1.46228093778771,1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| |||
|short_description=p3@NR4A3 | |||
}} |
Revision as of 02:28, 23 January 2014
Short description: | p3@NR4A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR4A3_5end |
Coexpression cluster: | C2428_Mast_CD14_Eosinophils_immature_CD19_CD4_CD8 |
Association with transcript: | 0bp_to_ENST00000338488, ENST00000395097, NM_006981, NM_173199, NM_173200, uc004bae.2, uc004baf.1, uc004bag.1_5end |
EntrezGene: | NR4A3 |
HGNC: | 7982 |
UniProt: | Q92570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.23e-28 | 72 |
leukocyte | 1.62e-27 | 136 |
classical monocyte | 4.89e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.89e-27 | 42 |
defensive cell | 1.25e-25 | 48 |
phagocyte | 1.25e-25 | 48 |
granulocyte monocyte progenitor cell | 1.85e-24 | 67 |
macrophage dendritic cell progenitor | 2.60e-22 | 61 |
myeloid lineage restricted progenitor cell | 3.17e-21 | 66 |
monopoietic cell | 6.93e-21 | 59 |
monocyte | 6.93e-21 | 59 |
monoblast | 6.93e-21 | 59 |
promonocyte | 6.93e-21 | 59 |
hematopoietic lineage restricted progenitor cell | 6.13e-18 | 120 |
hematopoietic stem cell | 4.25e-17 | 168 |
nongranular leukocyte | 4.60e-17 | 115 |
myeloid cell | 2.66e-16 | 108 |
common myeloid progenitor | 2.66e-16 | 108 |
hematopoietic cell | 3.94e-15 | 177 |
hematopoietic oligopotent progenitor cell | 8.74e-15 | 161 |
hematopoietic multipotent progenitor cell | 8.74e-15 | 161 |
dendritic cell | 8.64e-09 | 10 |
conventional dendritic cell | 8.53e-08 | 8 |
granulocyte | 3.15e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.36e-20 | 76 |
bone element | 1.57e-18 | 82 |
hematopoietic system | 2.82e-16 | 98 |
blood island | 2.82e-16 | 98 |
skeletal system | 5.03e-15 | 100 |
immune system | 6.65e-15 | 93 |
skeletal element | 1.77e-14 | 90 |
hemolymphoid system | 3.32e-12 | 108 |
adult organism | 1.10e-07 | 114 |