UBERON:0005352: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=spermatic cord | |name=spermatic cord | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004054 | |part_of=UBERON:0004054 | ||
Latest revision as of 17:52, 12 September 2014
| Name: | spermatic cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord] | ||
| Xrefs: |
| ||
| Synonyms: |
"funiculus spermaticus" RELATED LATIN [Wikipedia:Spermatic_cord] "spermatic chord" RELATED [] |
Male_anatomy.png]
200px-Male_anatomy.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0005156(reproductive structure),UBERON:0014403(male anatomical structure) |
|---|---|
| part_of: | UBERON:0004054(internal male genitalia) |
Children
| part of: | UBERON:0001000 (vas deferens) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005352 (spermatic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836666..43836681,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836666..43836681, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chrX:152622610..152622615,+#_9de1ffac85834d2503c5453b631f0b46 | p@chrX:152622610..152622615, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836287..43836295,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836287..43836295, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43838343..43838355,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43838343..43838355, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836620..43836625,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836620..43836625, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:15732081..15732088,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr19:15732081..15732088, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43835380..43835384,+#_9de1ffac85834d2503c5453b631f0b46 | p2@SEMG1, p3@SEMG2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836544..43836571,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836544..43836571, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836225..43836234,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836225..43836234, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836329..43836334,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836329..43836334, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:42942084..42942100,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr4:42942084..42942100, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43853046..43853053,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43853046..43853053, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:15731989..15732000,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr19:15731989..15732000, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836942..43836962,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836942..43836962, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:25179461..25179463,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr1:25179461..25179463, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:219942197..219942226,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr2:219942197..219942226, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836696..43836705,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836696..43836705, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43850505..43850516,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43850505..43850516, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836486..43836506,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836486..43836506, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836912..43836919,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836912..43836919, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:223648293..223648295,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr2:223648293..223648295, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836771..43836789,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836771..43836789, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836518..43836524,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836518..43836524, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr15:91849918..91849931, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1032745..1032750,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr11:1032745..1032750, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:70856430..70856440,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr6:70856430..70856440, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:15732081..15732088,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr19:15732081..15732088, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836170..43836181,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836170..43836181, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1032745..1032750,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr11:1032745..1032750, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:26217127..26217131,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr1:26217127..26217131, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43853005..43853012,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43853005..43853012, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836329..43836334, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836666..43836681,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836666..43836681, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:126515178..126515204,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr12:126515178..126515204, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43838343..43838355,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43838343..43838355, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:34592440..34592452,+#_9de1ffac85834d2503c5453b631f0b46 | p1@ENST00000527135 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836267..43836284,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836267..43836284, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:25179461..25179463,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr1:25179461..25179463, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:18887940..18887947,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr2:18887940..18887947, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:179511281..179511283,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr5:179511281..179511283, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836115..43836122,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836115..43836122, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:25623518..25623540,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr10:25623518..25623540, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836486..43836506,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836486..43836506, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836620..43836625,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836620..43836625, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836544..43836571,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836544..43836571, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:91849948..91849962,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr15:91849948..91849962, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:34592440..34592452,+#_9de1ffac85834d2503c5453b631f0b46 | p1@ENST00000527135 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:223648293..223648295,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr2:223648293..223648295, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:91849918..91849931,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr15:91849918..91849931, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836696..43836705,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836696..43836705, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:42942084..42942100,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr4:42942084..42942100, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836170..43836181,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836170..43836181, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:25623518..25623540,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr10:25623518..25623540, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:70856430..70856440,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr6:70856430..70856440, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chrX:152622610..152622615,+#_9de1ffac85834d2503c5453b631f0b46 | p@chrX:152622610..152622615, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836287..43836295,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836287..43836295, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836942..43836962,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836942..43836962, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:26217127..26217131,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr1:26217127..26217131, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43853005..43853012,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43853005..43853012, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:30182693..30182698,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr11:30182693..30182698, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43850505..43850516,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43850505..43850516, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836912..43836919,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836912..43836919, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43835380..43835384,+#_9de1ffac85834d2503c5453b631f0b46 | p2@SEMG1, p3@SEMG2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836267..43836284,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836267..43836284, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:18887940..18887947,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr2:18887940..18887947, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836225..43836234,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836225..43836234, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:179511281..179511283,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr5:179511281..179511283, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:43836115..43836122,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836115..43836122, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836771..43836789,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836771..43836789, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:15731989..15732000,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr19:15731989..15732000, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:30182693..30182698,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr11:30182693..30182698, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43853046..43853053,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43853046..43853053, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:91849948..91849962,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr15:91849948..91849962, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:219942197..219942226,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr2:219942197..219942226, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:43836518..43836524,-#_9de1ffac85834d2503c5453b631f0b46 | p@chr20:43836518..43836524, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:126515178..126515204,+#_9de1ffac85834d2503c5453b631f0b46 | p@chr12:126515178..126515204, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:15733422..15733428,+#_a119b360826d0139a70b53f038a638f2 | p@chr19:15733422..15733428, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:50017636..50017649,-#_a119b360826d0139a70b53f038a638f2 | p@chr6:50017636..50017649, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43853036..43853043,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43853036..43853043, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:15731181..15731184,+#_a119b360826d0139a70b53f038a638f2 | p@chr19:15731181..15731184, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43837295..43837300,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43837295..43837300, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:125657931..125657940,+#_a119b360826d0139a70b53f038a638f2 | p3@PATE3 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:43836142..43836161,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43836142..43836161, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:72173239..72173251,-#_a119b360826d0139a70b53f038a638f2 | p@chr16:72173239..72173251, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:89080362..89080367,-#_a119b360826d0139a70b53f038a638f2 | p25@ABCG2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chrX:11289165..11289191,-#_a119b360826d0139a70b53f038a638f2 | p@chrX:11289165..11289191, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43851080..43851084,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43851080..43851084, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43836066..43836075,-#_a119b360826d0139a70b53f038a638f2 | p@chr20:43836066..43836075, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:21059506..21059525,-#_a119b360826d0139a70b53f038a638f2 | p@chr14:21059506..21059525, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43851914..43851932,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43851914..43851932, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:15728853..15728859,+#_a119b360826d0139a70b53f038a638f2 | p@chr19:15728853..15728859, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:49149230..49149264,-#_a119b360826d0139a70b53f038a638f2 | p@chr3:49149230..49149264, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:43850531..43850538,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43850531..43850538, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43836939..43836958,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43836939..43836958, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr17:7415230..7415240,+#_a119b360826d0139a70b53f038a638f2 | p@chr17:7415230..7415240, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:40980960..40980970,-#_a119b360826d0139a70b53f038a638f2 | p@chr20:40980960..40980970, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:43852949..43852953,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43852949..43852953, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:15730000..15730004,+#_a119b360826d0139a70b53f038a638f2 | p@chr19:15730000..15730004, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47337358..47337375,+#_a119b360826d0139a70b53f038a638f2 | p@chr21:47337358..47337375, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:43851532..43851542,+#_a119b360826d0139a70b53f038a638f2 | p@chr20:43851532..43851542, + |
