FFCP PHASE2:Hg19::chr17:56494950..56494961,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:54894 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:18505 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=54894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=18505 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q68DV7 | ||
|association_with_transcript=-19bp_to_NM_017763,uc002iwg.3,uc002iwh.3,uc010dcw.2_5end | |association_with_transcript=-19bp_to_NM_017763,uc002iwg.3,uc002iwh.3,uc010dcw.2_5end | ||
|cluster_id=chr17:56494950..56494961,- | |cluster_id=chr17:56494950..56494961,- | ||
Latest revision as of 11:27, 16 September 2015
| Short description: | p6@RNF43 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_RNF43_5end |
| Coexpression cluster: | C2423_small_signet_papillotubular_malignant_hepatocellular_maxillary_colon |
| Association with transcript: | -19bp_to_NM_017763, uc002iwg.3, uc002iwh.3, uc010dcw.2_5end |
| EntrezGene: | RNF43 |
| HGNC: | 18505 |
| UniProt: | Q68DV7 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@RNF43 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell of large intestine | 1.44e-25 | 2 |
| intestinal epithelial cell | 2.67e-13 | 4 |
| hepatocyte | 3.96e-10 | 12 |
| endodermal cell | 5.89e-10 | 58 |
| sebum secreting cell | 1.36e-07 | 2 |
| epithelial cell of sweat gland | 1.36e-07 | 2 |
| epithelial cell of skin gland | 1.36e-07 | 2 |
| acinar cell of sebaceous gland | 1.36e-07 | 2 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| rectum | 2.67e-13 | 4 |
| intestinal mucosa | 2.67e-13 | 4 |
| wall of intestine | 2.67e-13 | 4 |
| gastrointestinal system mucosa | 2.67e-13 | 4 |
| gastrointestinal system epithelium | 2.67e-13 | 4 |
| intestinal epithelium | 2.67e-13 | 4 |
| lower digestive tract | 7.89e-11 | 5 |
| skin gland | 1.36e-07 | 2 |
| epidermis gland | 1.36e-07 | 2 |
| gland of integumental system | 1.36e-07 | 2 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| signet ring cell adenocarcinoma | 8.70e-26 | 2 |
| adenocarcinoma | 2.34e-12 | 25 |
| carcinoma | 1.49e-08 | 106 |
| gastrointestinal system cancer | 1.70e-08 | 14 |
Showing 1 to 4 of 4 entries
