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(Created page with "{{CL |id=CL:0000066 |name=epithelial cell |namespace=cell |def="A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton th...")
 
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|id=CL:0000066
|id=CL:0000066
|name=epithelial cell
|name=epithelial cell
|namespace=cell
|namespace=efo
|def="A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436]
|def="A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436]
|xref=BTO:0000414;;FBbt:00000124;;FMA:66768
|xref=BTO:0000414;;FBbt:00000124;;FMA:66768;;WBbt:0003672
|is_a=CL:0000063;;CL:0000548
|is_a=CL:0000063;;CL:0000548;;EFO:0000324
|synonym="Epitheliocyte" EXACT []
|synonym="epitheliocyte" EXACT []
|comment=
|comment=
|alt_id=
|alt_id=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:36, 15 June 2012

Name:epithelial cell
Namespace:efo
Definition:"A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436]
Xrefs:
links:

BTO:0000414
FBbt:00000124
FMA:66768

WBbt:0003672
Synonyms: "epitheliocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000063(),CL:0000548(animal cell),EFO:0000324(cell type)



Children


is a:CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000076 (squamous epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000082 (epithelial cell of lung),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000244 (transitional epithelial cell),CL:0000666 (fenestrated cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002327 (mammary gland epithelial cell),CL:0002518 (kidney epithelial cell),CL:0002535 (epithelial cell of cervix),CL:0002536 (amniotic epithelial cell),CL:0002565 (iris pigment epithelial cell),CL:0002577 (placental epithelial cell),CL:0002586 (retinal pigment epithelial cell),CL:0005012 (multi-ciliated epithelial cell),CL:1000415 (epithelial cell of gall bladder)
derives from:FF:0101120 (epithelial cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000066 (epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data