UBERON:0000305: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000305
|name=amnion
|namespace=
|def="A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, ...") |
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|def="A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 窶廣mniota窶� but not in amphibians and fish (Ichthyopsida), which are consequently termed 窶廣namniota窶� The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion] | |def="A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 窶廣mniota窶�; but not in amphibians and fish (Ichthyopsida), which are consequently termed 窶廣namniota窶�. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion] | ||
|xref=BTO:0000065;;EHDAA:136;;EHDAA2:0000116;;EMAPA:16109;;EV:0100122;;FMA:80223;;GAID:1298;;MESH:A.16.254.403.277;;ncithesaurus:Amnion;;SCTID:181457005;;VHOG:0000721 | |xref=BTO:0000065;;EHDAA:136;;EHDAA2:0000116;;EMAPA:16109;;EV:0100122;;FMA:80223;;GAID:1298;;MESH:A.16.254.403.277;;ncithesaurus:Amnion;;SCTID:181457005;;VHOG:0000721 | ||
|is_a=UBERON:0004120;;UBERON:0004121;;UBERON:0005631 | |is_a=UBERON:0004120;;UBERON:0004121;;UBERON:0005631 | ||
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|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:09, 15 June 2012
| Name: | amnion | ||
|---|---|---|---|
| Definition: | "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 窶廣mniota窶�; but not in amphibians and fish (Ichthyopsida), which are consequently termed 窶廣namniota窶�. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion] | ||
| Xrefs: |
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| Alt_id: | UBERON:BTO_0000065-FMA_80223 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0005631(extraembryonic membrane) |
|---|---|
| develops_from: | UBERON:0000924(ectoderm),UBERON:0004871(somatic layer of lateral plate mesoderm) |
Children
| derives from: | FF:0000010 (human amniotic membrane cell- Amnion sample),FF:0011386 (mouse amnion - adult pregnant day17.5 sample) |
|---|---|
| part of: | FF:0000010 (human amniotic membrane cell- Amnion sample),CL:0002536 (amniotic epithelial cell),CL:0002537 (amnion mesenchymal stem cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11533-120A3 (Amniotic Epithelial Cells, donor1)
- 11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
- 11613-122A2 (Amniotic Epithelial Cells, donor2)
- 11627-122B7 (Mesenchymal Stem Cells - amniotic membrane, donor2)
- 11694-123A2 (Amniotic Epithelial Cells, donor3)
- 12235-129G3 (amniotic membrane cells, donor1)
- 12236-129G4 (amniotic membrane cells, donor2)
- 12237-129G5 (amniotic membrane cells, donor3)
- 583-22A8 (amnion, adult pregnant day17.5)
Mouse (Mus musculus)
- 11533-120A3 (Amniotic Epithelial Cells, donor1)
- 11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
- 11613-122A2 (Amniotic Epithelial Cells, donor2)
- 11627-122B7 (Mesenchymal Stem Cells - amniotic membrane, donor2)
- 11694-123A2 (Amniotic Epithelial Cells, donor3)
- 12235-129G3 (amniotic membrane cells, donor1)
- 12236-129G4 (amniotic membrane cells, donor2)
- 12237-129G5 (amniotic membrane cells, donor3)
- 583-22A8 (amnion, adult pregnant day17.5)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000305 (amnion), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:55990290..55990292,+#_ea24fa935f6b043451af56f5445061ba | p@chr14:55990290..55990292, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:132106890..132106933,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:132106890..132106933, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:145704607..145704614,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:145704607..145704614, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:4603074..4603079,+#_ea24fa935f6b043451af56f5445061ba | p@chr19:4603074..4603079, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:31491605..31491614,-#_ea24fa935f6b043451af56f5445061ba | p@chr13:31491605..31491614, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:31883134..31883152,+#_ea24fa935f6b043451af56f5445061ba | p@chr3:31883134..31883152, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:14480480..14480485,-#_ea24fa935f6b043451af56f5445061ba | p@chr9:14480480..14480485, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:46018791..46018808,+#_ea24fa935f6b043451af56f5445061ba | p@chr9:46018791..46018808, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:158457392..158457402,-#_ea24fa935f6b043451af56f5445061ba | p@chrX:158457392..158457402, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:44408344..44408356,+#_ea24fa935f6b043451af56f5445061ba | p@chr19:44408344..44408356, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chrX:96225919..96225928,-#_ea24fa935f6b043451af56f5445061ba | p@chrX:96225919..96225928, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:31883134..31883152,+#_ea24fa935f6b043451af56f5445061ba | p@chr3:31883134..31883152, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:66960457..66960458,-#_ea24fa935f6b043451af56f5445061ba | p@chr15:66960457..66960458, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:54720329..54720337,+#_ea24fa935f6b043451af56f5445061ba | p@chr11:54720329..54720337, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:52811703..52811738,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:52811703..52811738, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:118547872..118547876,+#_ea24fa935f6b043451af56f5445061ba | p@chr4:118547872..118547876, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:41014050..41014058,+#_ea24fa935f6b043451af56f5445061ba | p@chr13:41014050..41014058, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:144508809..144508810,+#_ea24fa935f6b043451af56f5445061ba | p@chr1:144508809..144508810, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:63854526..63854533,-#_ea24fa935f6b043451af56f5445061ba | p@chr18:63854526..63854533, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:109945451..109945458,-#_ea24fa935f6b043451af56f5445061ba | p2@Nob1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85794397..85794405,+#_ea24fa935f6b043451af56f5445061ba | p@chr10:85794397..85794405, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:128229148..128229155,-#_ea24fa935f6b043451af56f5445061ba | p@chr6:128229148..128229155, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:132106890..132106933,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:132106890..132106933, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:74197226..74197270,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:74197226..74197270, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:154591314..154591321,-#_ea24fa935f6b043451af56f5445061ba | p@chr4:154591314..154591321, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:96225919..96225928,-#_ea24fa935f6b043451af56f5445061ba | p@chrX:96225919..96225928, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:53922673..53922686,-#_ea24fa935f6b043451af56f5445061ba | p6@Tph1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:4592969..4592972,-#_ea24fa935f6b043451af56f5445061ba | p@chr15:4592969..4592972, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:13955172..13955179,-#_ea24fa935f6b043451af56f5445061ba | p@chr13:13955172..13955179, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:31491605..31491614,-#_ea24fa935f6b043451af56f5445061ba | p@chr13:31491605..31491614, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:140478947..140478956,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:140478947..140478956, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:71760739..71760747,+#_ea24fa935f6b043451af56f5445061ba | p@chr1:71760739..71760747, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:23320910..23320916,+#_ea24fa935f6b043451af56f5445061ba | p@chr16:23320910..23320916, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:88082166..88082167,-#_ea24fa935f6b043451af56f5445061ba | p@chr17:88082166..88082167, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:117347211..117347216,-#_ea24fa935f6b043451af56f5445061ba | p@chr14:117347211..117347216, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:51912341..51912365,+#_ea24fa935f6b043451af56f5445061ba | p@chr9:51912341..51912365, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109215013..109215035,+#_ea24fa935f6b043451af56f5445061ba | p@chr11:109215013..109215035, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:34338500..34338511,-#_ea24fa935f6b043451af56f5445061ba | p@chr13:34338500..34338511, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:71760726..71760736,+#_ea24fa935f6b043451af56f5445061ba | p@chr1:71760726..71760736, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:140478890..140478902,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:140478890..140478902, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:30189733..30189737,-#_ea24fa935f6b043451af56f5445061ba | p@chr19:30189733..30189737, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:94484780..94484795,-#_ea24fa935f6b043451af56f5445061ba | p@chr3:94484780..94484795, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:151366511..151366518,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:151366511..151366518, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:25134796..25134826,-#_ea24fa935f6b043451af56f5445061ba | p@chr17:25134796..25134826, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:51912341..51912365,+#_ea24fa935f6b043451af56f5445061ba | p@chr9:51912341..51912365, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:75130147..75130152,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:75130147..75130152, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chrX:12833809..12833838,+#_ea24fa935f6b043451af56f5445061ba | p@chrX:12833809..12833838, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:57133028..57133046,-#_ea24fa935f6b043451af56f5445061ba | p15@Epb4.1l4b |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:46018679..46018690,+#_ea24fa935f6b043451af56f5445061ba | p@chr9:46018679..46018690, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:106855146..106855162,-#_ea24fa935f6b043451af56f5445061ba | p4@Slco2b1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:14480461..14480472,-#_ea24fa935f6b043451af56f5445061ba | p@chr9:14480461..14480472, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:14480492..14480498,-#_ea24fa935f6b043451af56f5445061ba | p@chr9:14480492..14480498, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:88082166..88082167,-#_ea24fa935f6b043451af56f5445061ba | p@chr17:88082166..88082167, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:172988209..172988210,-#_ea24fa935f6b043451af56f5445061ba | p7@Fcgr3 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:7972470..7972501,+#_ea24fa935f6b043451af56f5445061ba | p@chr5:7972470..7972501, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:31569960..31569984,+#_ea24fa935f6b043451af56f5445061ba | p@chr6:31569960..31569984, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:74197226..74197270,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:74197226..74197270, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:15255734..15255745,-#_ea24fa935f6b043451af56f5445061ba | p@chr14:15255734..15255745, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:43043312..43043317,-#_ea24fa935f6b043451af56f5445061ba | p4@Stoml2 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:4603074..4603079,+#_ea24fa935f6b043451af56f5445061ba | p@chr19:4603074..4603079, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:25134796..25134826,-#_ea24fa935f6b043451af56f5445061ba | p@chr17:25134796..25134826, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:31973017..31973023,+#_ea24fa935f6b043451af56f5445061ba | p@chr3:31973017..31973023, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:37103349..37103350,-#_ea24fa935f6b043451af56f5445061ba | p@chr5:37103349..37103350, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:94369661..94369663,-#_ea24fa935f6b043451af56f5445061ba | p@chr11:94369661..94369663, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:100615157..100615164,-#_ea24fa935f6b043451af56f5445061ba | p@chr12:100615157..100615164, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:83099058..83099067,-#_ea24fa935f6b043451af56f5445061ba | p@chr10:83099058..83099067, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:33003311..33003317,-#_ea24fa935f6b043451af56f5445061ba | p@chr15:33003311..33003317, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:172988209..172988210,-#_ea24fa935f6b043451af56f5445061ba | p7@Fcgr3 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:7060053..7060066,+#_ea24fa935f6b043451af56f5445061ba | p@chr11:7060053..7060066, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:94484780..94484795,-#_ea24fa935f6b043451af56f5445061ba | p@chr3:94484780..94484795, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:145704563..145704575,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:145704563..145704575, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:37103349..37103350,-#_ea24fa935f6b043451af56f5445061ba | p@chr5:37103349..37103350, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:121638899..121638906,+#_ea24fa935f6b043451af56f5445061ba | p@chr14:121638899..121638906, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:11953937..11953941,+#_ea24fa935f6b043451af56f5445061ba | p@chr11:11953937..11953941, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:116597883..116597886,-#_ea24fa935f6b043451af56f5445061ba | p@chr6:116597883..116597886, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:136335269..136335280,+#_ea24fa935f6b043451af56f5445061ba | p6@Cldn2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:41014050..41014058,+#_ea24fa935f6b043451af56f5445061ba | p@chr13:41014050..41014058, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:43043312..43043317,-#_ea24fa935f6b043451af56f5445061ba | p4@Stoml2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:151937929..151937932,-#_ea24fa935f6b043451af56f5445061ba | p8@Ano1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:6785485..6785487,-#_ea24fa935f6b043451af56f5445061ba | p@chr3:6785485..6785487, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:140503157..140503186,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:140503157..140503186, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:151366511..151366518,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:151366511..151366518, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:32785262..32785287,-#_ea24fa935f6b043451af56f5445061ba | p@chr2:32785262..32785287, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:71780113..71780133,+#_ea24fa935f6b043451af56f5445061ba | p@chr1:71780113..71780133, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:3587448..3587458,+#_ea24fa935f6b043451af56f5445061ba | p@chr15:3587448..3587458, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:106855146..106855162,-#_ea24fa935f6b043451af56f5445061ba | p4@Slco2b1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:94369661..94369663,-#_ea24fa935f6b043451af56f5445061ba | p@chr11:94369661..94369663, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:156969548..156969555,+#_ea24fa935f6b043451af56f5445061ba | p@chr1:156969548..156969555, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:119866570..119866573,+#_ea24fa935f6b043451af56f5445061ba | p@chr8:119866570..119866573, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:33003311..33003317,-#_ea24fa935f6b043451af56f5445061ba | p@chr15:33003311..33003317, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35161052..35161058,+#_ea24fa935f6b043451af56f5445061ba | p@chr17:35161052..35161058, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:71760739..71760747,+#_ea24fa935f6b043451af56f5445061ba | p@chr1:71760739..71760747, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:140478947..140478956,-#_ea24fa935f6b043451af56f5445061ba | p@chr1:140478947..140478956, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35161052..35161058,+#_ea24fa935f6b043451af56f5445061ba | p@chr17:35161052..35161058, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:54720278..54720283,+#_ea24fa935f6b043451af56f5445061ba | p@chr11:54720278..54720283, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:32785262..32785287,-#_ea24fa935f6b043451af56f5445061ba | p@chr2:32785262..32785287, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:151366529..151366534,+#_ea24fa935f6b043451af56f5445061ba | p@chr2:151366529..151366534, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:134096797..134096803,-#_ea24fa935f6b043451af56f5445061ba | p1@ENSMUST00000127585 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:46018791..46018808,+#_ea24fa935f6b043451af56f5445061ba | p@chr9:46018791..46018808, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:61822745..61822749,+#_ea24fa935f6b043451af56f5445061ba | p@chr12:61822745..61822749, + |
