UBERON:0007376: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 7: | Line 7: | ||
|is_a=UBERON:0000483;;UBERON:0003102 | |is_a=UBERON:0000483;;UBERON:0003102 | ||
|synonym="epidermis" NARROW [GO:0008544];;"hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733];;"outer epidermal layer" EXACT [] | |synonym="epidermis" NARROW [GO:0008544];;"hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733];;"outer epidermal layer" EXACT [] | ||
|comment= | |comment=Editor's note: this grouping class exists primarily to align with GO - see GO:0008544. | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=grouping_class | |subset=grouping_class | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 17:08, 26 June 2012
| Name: | outer epithelial layer | ||
|---|---|---|---|
| Definition: | "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]." [Wikipedia:Epidermis_(zoology)] | ||
| Xrefs: |
| ||
| Synonyms: |
"epidermis" NARROW [GO:0008544] "hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733] "outer epidermal layer" EXACT [] | ||
| Comments: | Editor's note: this grouping class exists primarily to align with GO - see GO:0008544. | ||
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000483(epithelium),UBERON:0003102(surface structure) |
|---|
Children
| is a: | UBERON:0001003 (skin epidermis) |
|---|---|
| part of: | CL:0000362 (epidermal cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10273-104E3
- 10283-104F4
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
- 10289-104G1
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10311-104I5
... further results Mouse (Mus musculus)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10273-104E3
- 10283-104F4
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
- 10289-104G1
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10311-104I5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007376 (outer epithelial layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_b16b93c98cbe7782d166a5c37413843e | p@chr11:99227413..99227429, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_b16b93c98cbe7782d166a5c37413843e | p1@Skint11 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_b16b93c98cbe7782d166a5c37413843e | p@chr5:137057540..137057550, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_b16b93c98cbe7782d166a5c37413843e | p2@Dlx3 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_b16b93c98cbe7782d166a5c37413843e | p@chr13:113381448..113381495, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_b16b93c98cbe7782d166a5c37413843e | p1@Krt74 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_b16b93c98cbe7782d166a5c37413843e | p@chr1:191609138..191609151, + |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_b16b93c98cbe7782d166a5c37413843e | p@chr11:99227413..99227429, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_b16b93c98cbe7782d166a5c37413843e | p@chr11:36246521..36246530, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_b16b93c98cbe7782d166a5c37413843e | p1@Krt74 |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_b16b93c98cbe7782d166a5c37413843e | p2@Pla2g2f |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_b16b93c98cbe7782d166a5c37413843e | p2@Skint11 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_b16b93c98cbe7782d166a5c37413843e | p2@Pla2g2f |
| 1.4e-86 | FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_b16b93c98cbe7782d166a5c37413843e | p@chr13:113381448..113381495, - |
| 1.4e-86 | FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_b16b93c98cbe7782d166a5c37413843e | p@chr5:137057540..137057550, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_b16b93c98cbe7782d166a5c37413843e | p2@Dlx3 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_b16b93c98cbe7782d166a5c37413843e | p1@Skint11 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_b16b93c98cbe7782d166a5c37413843e | p@chr11:36246521..36246530, - |
| 1.4e-86 | FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_b16b93c98cbe7782d166a5c37413843e | p2@Skint11 |
| 1.4e-86 | FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_b16b93c98cbe7782d166a5c37413843e | p@chr1:191609138..191609151, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr7:127260268..127260277, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr3:90343597..90343613, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr1:46949894..46949911, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr5:137057441..137057450, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr11:99207849..99207853, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr5:137057441..137057450, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr7:97432305..97432311, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr5:137057490..137057506, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr11:99207849..99207853, - |
| 1.07e-72 | FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_ab50f2c2a5b082d1226f8e7c9566880b | p6@Mfsd4 |
| 1.07e-72 | FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr7:127260268..127260277, + |
| 1.07e-72 | FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr5:137057490..137057506, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_ab50f2c2a5b082d1226f8e7c9566880b | p6@Mfsd4 |
| 1.07e-72 | FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr1:46949894..46949911, - |
| 1.07e-72 | FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_ab50f2c2a5b082d1226f8e7c9566880b | p1@Pnpla5 |
| 1.07e-72 | FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_ab50f2c2a5b082d1226f8e7c9566880b | p1@Pnpla5 |
| 1.07e-72 | FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr3:90343597..90343613, + |
| 1.07e-72 | FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_ab50f2c2a5b082d1226f8e7c9566880b | p@chr7:97432305..97432311, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_902eea3bc12db94b4f184c07cba599a5 | p1@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_902eea3bc12db94b4f184c07cba599a5 | p25@Myo10 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_902eea3bc12db94b4f184c07cba599a5 | p1@Lyg2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_902eea3bc12db94b4f184c07cba599a5 | p1@Actbl2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_902eea3bc12db94b4f184c07cba599a5 | p@chr6:134595955..134595965, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_902eea3bc12db94b4f184c07cba599a5 | p@chr3:138004932..138004945, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_902eea3bc12db94b4f184c07cba599a5 | p@chr6:97778311..97778326, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_902eea3bc12db94b4f184c07cba599a5 | p@chr10:43724117..43724131, - |
| 1.5e-72 | FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_902eea3bc12db94b4f184c07cba599a5 | p25@Myo10 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_902eea3bc12db94b4f184c07cba599a5 | p@chr3:138004932..138004945, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_902eea3bc12db94b4f184c07cba599a5 | p@chr10:43724117..43724131, - |
| 1.5e-72 | FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_902eea3bc12db94b4f184c07cba599a5 | p@chr10:66991117..66991146, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_902eea3bc12db94b4f184c07cba599a5 | p1@Actbl2 |
| 1.5e-72 | FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_902eea3bc12db94b4f184c07cba599a5 | p@chr10:66991117..66991146, + |
| 1.5e-72 | FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_902eea3bc12db94b4f184c07cba599a5 | p2@Lyg2 |
| 1.5e-72 | FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_902eea3bc12db94b4f184c07cba599a5 | p@chr6:97778311..97778326, + |
| 1.5e-72 | FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_902eea3bc12db94b4f184c07cba599a5 | p@chr6:134595955..134595965, - |
| 1.5e-72 | FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_902eea3bc12db94b4f184c07cba599a5 | p2@Lyg2 |
| 2.1e-72 | FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_af59c401765c35637add1bd23b9bd616 | p@chr7:117436977..117436981, - |
| 2.1e-72 | FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_af59c401765c35637add1bd23b9bd616 | p6@Zdhhc21 |
| 2.1e-72 | FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_af59c401765c35637add1bd23b9bd616 | p@chr4:111707315..111707319, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_af59c401765c35637add1bd23b9bd616 | p@chr1:89485356..89485361, + |
| 2.1e-72 | FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_af59c401765c35637add1bd23b9bd616 | p@chr1:89485356..89485361, + |
| 2.1e-72 | FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_af59c401765c35637add1bd23b9bd616 | p@chr7:117436977..117436981, - |
| 2.1e-72 | FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_af59c401765c35637add1bd23b9bd616 | p6@Zdhhc21 |
| 2.1e-72 | FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_af59c401765c35637add1bd23b9bd616 | p@chr4:111707315..111707319, + |
| 4.13e-72 | FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_c175d4adf8a8cbbc7e197813b49c8c12 | p1@Skint5 |
| 4.13e-72 | FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_c175d4adf8a8cbbc7e197813b49c8c12 | p1@Skint5 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr6:97778346..97778356,+#_b22648cca231035b73c4584b9585d74d | p@chr6:97778346..97778356, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr1:46949977..46949981,-#_b22648cca231035b73c4584b9585d74d | p@chr1:46949977..46949981, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chr4:82496602..82496610,-#_b22648cca231035b73c4584b9585d74d | p8@Zdhhc21 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93247570..93247579,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93247570..93247579, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr18:20469239..20469258,+#_b22648cca231035b73c4584b9585d74d | p2@Dsg1a |
| 1.65e-69 | FFCP PHASE1:Mm9::chr4:144311334..144311342,-#_b22648cca231035b73c4584b9585d74d | p3@Gm13178 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr17:14011908..14011919,+#_b22648cca231035b73c4584b9585d74d | p13@Mllt4 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr6:144579044..144579056,-#_b22648cca231035b73c4584b9585d74d | p@chr6:144579044..144579056, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93249466..93249478,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93249466..93249478, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr6:97778294..97778306,+#_b22648cca231035b73c4584b9585d74d | p@chr6:97778294..97778306, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93247460..93247471,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93247460..93247471, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:59629633..59629644,+#_b22648cca231035b73c4584b9585d74d | p@chr3:59629633..59629644, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr4:144155170..144155177,-#_b22648cca231035b73c4584b9585d74d | p2@Gm13124 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr11:99957587..99957593,-#_b22648cca231035b73c4584b9585d74d | p2@Krt35 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93248889..93248897,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93248889..93248897, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93248697..93248704,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93248697..93248704, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_b22648cca231035b73c4584b9585d74d | p1@Otop2 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr14:21082655..21082682,-#_b22648cca231035b73c4584b9585d74d | p@chr14:21082655..21082682, - |
| 1.65e-69 | FFCP PHASE1:Mm9::chrX:166374681..166374688,+#_b22648cca231035b73c4584b9585d74d | p@chrX:166374681..166374688, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr4:135527809..135527823,-#_b22648cca231035b73c4584b9585d74d | p4@Lypla2 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:63958211..63958219,+#_b22648cca231035b73c4584b9585d74d | p@chr8:63958211..63958219, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr5:75107109..75107125,-#_b22648cca231035b73c4584b9585d74d | p@chr5:75107109..75107125, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_b22648cca231035b73c4584b9585d74d | p2@Krt79 |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:63958211..63958219,+#_b22648cca231035b73c4584b9585d74d | p@chr8:63958211..63958219, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr4:144311356..144311370,-#_b22648cca231035b73c4584b9585d74d | p2@Gm13178 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr18:20469239..20469258,+#_b22648cca231035b73c4584b9585d74d | p2@Dsg1a |
| 1.65e-69 | FFCP PHASE2:Mm9::chr3:93248889..93248897,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93248889..93248897, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93247552..93247564,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93247552..93247564, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr2:129949046..129949050,+#_b22648cca231035b73c4584b9585d74d | p2@Tgm6 |
| 1.65e-69 | FFCP PHASE1:Mm9::chr16:56831979..56831988,-#_b22648cca231035b73c4584b9585d74d | p13@Tmem45a |
| 1.65e-69 | FFCP PHASE1:Mm9::chr3:93250018..93250027,+#_b22648cca231035b73c4584b9585d74d | p@chr3:93250018..93250027, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr4:57351817..57351823,-#_b22648cca231035b73c4584b9585d74d | p@chr4:57351817..57351823, - |
| 1.65e-69 | FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_b22648cca231035b73c4584b9585d74d | p@chr9:43876286..43876293, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr18:20631745..20631746,+#_b22648cca231035b73c4584b9585d74d | p@chr18:20631745..20631746, + |
