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MCL coexpression mm9:1441: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.60572313444832,0.554775686045022,0.538535575418347,0.266743286797517,0.168932925906879,0.15394708157557,0.0833144037198813,0,0,0,0.0318038466769763,0.0558041721483835,0.0768144049304335,0,0.0205563265474198,0.0503919447329045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22301034595168,0.369386288104015,0.223284998180554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436531967264788,0.3423842760398,0.1384142053481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203410663873774,0.0543101607623745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.625947296774681,0.519625761433735,0.362405393141894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0199472445765722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.60572313444832,0.554775686045022,0.538535575418347,0.266743286797517,0.168932925906879,0.15394708157557,0.0833144037198813,0,0,0,0.0318038466769763,0.0558041721483835,0.0768144049304335,0,0.0205563265474198,0.0503919447329045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22301034595168,0.369386288104015,0.223284998180554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436531967264788,0.3423842760398,0.1384142053481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203410663873774,0.0543101607623745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.625947296774681,0.519625761433735,0.362405393141894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0199472445765722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000838!8.38e-42!12;CL:0000988!1.32e-41!32;CL:0002032!1.32e-41!32;CL:0000037!1.32e-41!32;CL:0000566!1.32e-41!32;CL:0000837!1.32e-41!32;CL:0000542!2.00e-38!13;CL:0000051!2.00e-38!13;CL:0000084!2.11e-38!11;CL:0000827!2.11e-38!11;CL:0000791!2.07e-32!9;CL:0000789!2.07e-32!9;CL:0002420!2.07e-32!9;CL:0002419!2.07e-32!9;CL:0000790!2.07e-32!9;CL:0002242!8.09e-31!16;CL:0002031!1.16e-29!25;CL:0000624!5.08e-29!8;CL:0000738!7.05e-29!17;CL:0002087!7.05e-29!17;CL:0002320!7.23e-28!46;CL:0000134!7.23e-28!46;CL:0000219!1.01e-25!54;CL:0000893!8.22e-22!6;CL:0002489!8.22e-22!6;CL:0000898!8.22e-22!6;CL:0000809!8.22e-22!6;CL:0000810!8.22e-22!6;CL:0000895!8.22e-22!6;CL:0000808!8.22e-22!6;CL:0000894!8.22e-22!6;CL:0000806!8.22e-22!6;CL:0000807!8.22e-22!6;CL:0000805!8.22e-22!6;CL:0002425!8.22e-22!6;CL:0002436!8.22e-22!6;CL:0002427!8.22e-22!6;CL:0002428!8.22e-22!6;CL:0002429!8.22e-22!6;CL:0002433!8.22e-22!6;CL:0002431!8.22e-22!6;CL:0002432!8.22e-22!6;CL:0000034!4.18e-16!97;CL:0000723!2.81e-12!91;CL:0000048!2.81e-12!91;CL:0000049!8.11e-11!19;CL:0000548!4.61e-10!115;CL:0000255!4.61e-10!115;CL:0002371!1.04e-09!118
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!7.23e-28!46;UBERON:0002390!3.43e-09!45;UBERON:0003061!3.43e-09!45;UBERON:0002193!1.75e-08!48;UBERON:0002405!1.75e-08!48;UBERON:0002370!6.43e-07!23;UBERON:0000974!6.43e-07!23;UBERON:0004807!6.43e-07!23;UBERON:0005058!6.43e-07!23;UBERON:0003351!6.43e-07!23;UBERON:0009113!6.43e-07!23;UBERON:0003295!6.43e-07!23;UBERON:0009722!6.43e-07!23;UBERON:0005562!6.43e-07!23;UBERON:0007690!6.43e-07!23
}}
}}

Revision as of 16:54, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:34813838..34813855,+p@chr2:34813838..34813855
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Mm9::chr2:34813870..34813875,+p@chr2:34813870..34813875
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Mm9::chr2:34819214..34819229,+p@chr2:34819214..34819229
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Mm9::chr6:108499886..108499901,+p@chr6:108499886..108499901
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Mm9::chr8:129391962..129391969,+p@chr8:129391962..129391969
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Mm9::chr9:107215852..107215865,+p@chr9:107215852..107215865
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
lymphoid lineage restricted progenitor cell8.38e-4212
hematopoietic cell1.32e-4132
hematopoietic oligopotent progenitor cell1.32e-4132
hematopoietic stem cell1.32e-4132
angioblastic mesenchymal cell1.32e-4132
hematopoietic multipotent progenitor cell1.32e-4132
lymphocyte2.00e-3813
common lymphoid progenitor2.00e-3813
T cell2.11e-3811
pro-T cell2.11e-3811
mature alpha-beta T cell2.07e-329
alpha-beta T cell2.07e-329
immature T cell2.07e-329
mature T cell2.07e-329
immature alpha-beta T cell2.07e-329
nucleate cell8.09e-3116
hematopoietic lineage restricted progenitor cell1.16e-2925
CD4-positive, alpha-beta T cell5.08e-298
leukocyte7.05e-2917
nongranular leukocyte7.05e-2917
connective tissue cell7.23e-2846
mesenchymal cell7.23e-2846
motile cell1.01e-2554
thymocyte8.22e-226
double negative thymocyte8.22e-226
naive T cell8.22e-226
double-positive, alpha-beta thymocyte8.22e-226
CD4-positive, alpha-beta thymocyte8.22e-226
naive thymus-derived CD4-positive, alpha-beta T cell8.22e-226
DN4 thymocyte8.22e-226
DN1 thymic pro-T cell8.22e-226
DN2 thymocyte8.22e-226
DN3 thymocyte8.22e-226
immature single positive thymocyte8.22e-226
early T lineage precursor8.22e-226
mature CD4 single-positive thymocyte8.22e-226
resting double-positive thymocyte8.22e-226
double-positive blast8.22e-226
CD69-positive double-positive thymocyte8.22e-226
CD69-positive, CD4-positive single-positive thymocyte8.22e-226
CD4-positive, CD8-intermediate double-positive thymocyte8.22e-226
CD24-positive, CD4 single-positive thymocyte8.22e-226
stem cell4.18e-1697
somatic stem cell2.81e-1291
multi fate stem cell2.81e-1291
common myeloid progenitor8.11e-1119
animal cell4.61e-10115
eukaryotic cell4.61e-10115
somatic cell1.04e-09118

Uber Anatomy
Ontology termp-valuen
connective tissue7.23e-2846
hematopoietic system3.43e-0945
blood island3.43e-0945
hemolymphoid system1.75e-0848
immune system1.75e-0848
thymus6.43e-0723
neck6.43e-0723
respiratory system epithelium6.43e-0723
hemolymphoid system gland6.43e-0723
pharyngeal epithelium6.43e-0723
thymic region6.43e-0723
pharyngeal gland6.43e-0723
entire pharyngeal arch endoderm6.43e-0723
thymus primordium6.43e-0723
early pharyngeal endoderm6.43e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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