User:Serkan: Difference between revisions
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if (index >= 0) { | if (index >= 0) { | ||
motif_id= motif_id.substr(0, index - 1) + motif_id.substr(index | motif_id= motif_id.substr(0, index - 1) + motif_id.substr(index); | ||
} | } | ||
var number_prefix= loqoNumberPrefixLocator(motif_db); | var number_prefix= loqoNumberPrefixLocator(motif_db); | ||
Revision as of 11:49, 30 April 2013
hello!yes,serkanSerkan
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| JASPAR_ID | Name |
|---|---|
| MA0002.2 | RUNX1 Runx1 |
| MA0003.1 | TFAP2A Tfap2a |
| MA0004.1 | Arnt ARNT |
| MA0006.1 | Arnt ARNT Ahr AHR |
| MA0007.1 | Ar AR |
| MA0009.1 | T |
| MA0014.1 | Pax5 PAX5 |
| MA0017.1 | NR2F1 Nr2f1 |
| MA0018.2 | CREB1 Creb1 |
| MA0019.1 | Ddit3 DDIT3 Cebpa CEBPA |
| MA0024.1 | E2F1 E2f1 |
| MA0025.1 | NFIL3 Nfil3 |
| MA0027.1 | En1 EN1 |
| MA0028.1 | ELK1 Elk1 |
| MA0029.1 | Evi1 |
| MA0030.1 | FOXF2 Foxf2 |
| MA0031.1 | FOXD1 Foxd1 |
| MA0035.2 | Gata1 GATA1 |
| MA0038.1 | Gfi |
| MA0039.2 | Klf4 KLF4 |
| MA0040.1 | Foxq1 FOXQ1 |
| MA0041.1 | Foxd3 FOXD3 |
| MA0042.1 | FOXI1 Foxi1 |
| MA0043.1 | HLF Hlf |
| MA0046.1 | HNF1A Hnf1a |
| MA0047.2 | Foxa2 FOXA2 |
| MA0048.1 | NHLH1 Nhlh1 |
| MA0050.1 | IRF1 Irf1 |
| MA0051.1 | IRF2 Irf2 |
| MA0052.1 | MEF2A Mef2a |
| MA0055.1 | Myf |
| MA0057.1 | MZF1_5-13 |
| MA0058.1 | MAX Max |
| MA0059.1 | Myc MYC Max MAX |
| MA0060.1 | NFYA Nfya |
| MA0061.1 | NF-kappaB |
| MA0062.2 | GABPA Gabpa |
| MA0065.2 | PPARG Pparg RXRA Rxra |
| MA0066.1 | PPARG Pparg |
| MA0067.1 | Pax2 PAX2 |
| MA0068.1 | Pax4 PAX4 |
| MA0069.1 | Pax6 PAX6 |
| MA0070.1 | PBX1 Pbx1 |
| MA0071.1 | RORA_1 |
| MA0072.1 | RORA_2 |
| MA0073.1 | RREB1 Rreb1 |
| MA0074.1 | RXRA Rxra VDR Vdr |
| MA0076.1 | ELK4 Elk4 |
| MA0077.1 | SOX9 Sox9 |
| MA0078.1 | Sox17 SOX17 |
| MA0079.2 | SP1 Sp1 |
| MA0080.2 | SPI1 |
| MA0081.1 | SPIB Spib |
| MA0083.1 | SRF Srf |
| MA0084.1 | SRY |
| MA0087.1 | Sox5 SOX5 |
| MA0088.1 | znf143 ZNF143 |
| MA0090.1 | TEAD1 Tead1 |
| MA0091.1 | TAL1 Tal1 TCF3 Tcf3 |
| MA0092.1 | Hand1 HAND1 Tcfe2a TCFE2A |
| MA0093.1 | USF1 Usf1 |
| MA0099.2 | AP1 |
| MA0100.1 | Myb MYB |
| MA0101.1 | REL Rel |
| MA0102.2 | CEBPA Cebpa |
| MA0103.1 | ZEB1 Zeb1 |
| MA0104.2 | Mycn MYCN |
| MA0105.1 | NFKB1 Nfkb1 |
| MA0106.1 | TP53 |
| MA0107.1 | RELA Rela |
| MA0108.2 | TBP Tbp |
| MA0111.1 | Spz1 SPZ1 |
| MA0112.2 | ESR1 Esr1 |
| MA0113.1 | NR3C1 Nr3c1 |
| MA0114.1 | HNF4A Hnf4a |
| MA0115.1 | NR1H2 Nr1h2 RXRA Rxra |
| MA0116.1 | Zfp423 |
| MA0117.1 | Mafb MAFB |
| MA0119.1 | TLX1 Tlx1 NFIC Nfic |
| MA0122.1 | Nkx3-2 NKX3-2 |
| MA0124.1 | NKX3-1 Nkx3-1 |
| MA0125.1 | Nobox |
| MA0131.1 | MIZF |
| MA0135.1 | Lhx3 LHX3 |
| MA0136.1 | ELF5 Elf5 |
| MA0137.2 | STAT1 Stat1 |
| MA0138.2 | REST Rest |
| MA0139.1 | CTCF Ctcf |
| MA0140.1 | Tal1 TAL1 Gata1 GATA1 |
| MA0141.1 | Esrrb ESRRB |
| MA0142.1 | Pou5f1 POU5F1 |
| MA0143.1 | Sox2 SOX2 |
| MA0144.1 | Stat3 STAT3 |
| MA0145.1 | Tcfcp2l1 |
| MA0146.1 | Zfx ZFX |
| MA0147.1 | Myc MYC |
| MA0148.1 | FOXA1 Foxa1 |
| MA0149.1 | EWSR1-FLI1 |
| MA0150.1 | NFE2L2 Nfe2l2 |
| MA0152.1 | NFATC2 Nfatc2 |
| MA0153.1 | HNF1B Hnf1b |
| MA0154.1 | EBF1 Ebf1 |
| MA0155.1 | INSM1 Insm1 |
| MA0156.1 | FEV |
| MA0157.1 | FOXO3 Foxo3 |
| MA0159.1 | RXR RAR_DR5 |
| MA0160.1 | NR4A2 Nr4a2 |
| MA0162.1 | Egr1 EGR1 |
| MA0163.1 | PLAG1 Plag1 |
| MA0164.1 | Nr2e3 NR2E3 |
| MA0258.1 | ESR2 Esr2 |
| MA0259.1 | HIF1A Hif1a ARNT Arnt |
| FF ontology id | Name | Sample category | Datafreeze phase |
|---|---|---|---|
| 10000-101A1 | Clontech Human Universal Reference Total RNA, pool1 | tissues | 2 |
| 10001-101A3 | Clontech Mouse Universal Reference Total RNA, pool1 | tissues | 2 |
| 10002-101A5 | SABiosciences XpressRef Human Universal Total RNA, pool1 | tissues | 2 |
| 10003-101A7 | SABiosciences XpressRef Mouse Universal Total RNA, pool1 | tissues | 2 |
| 10004-101A9 | chicken embryo whole body, day10 (HH37) | tissues | -1 |
| 10005-101B1 | {{{name}}} | {{{sample_category}}} | -1 |
| 10006-101B2 | Universal RNA - Dog Normal Tissues Biochain, pool1 | tissues | -1 |
| 10007-101B4 | Universal RNA - Human Normal Tissues Biochain, pool1 | tissues | 2 |
| 10008-101B6 | Universal RNA - Mouse Normal Tissues Biochain, pool1 | tissues | 2 |
| 10009-101B8 | Universal RNA - Rat Normal Tissues Biochain, pool1 | tissues | -1 |
| 10010-101C1 | adipose tissue, adult, pool1 | tissues | 2 |
| 10011-101C2 | bladder, adult, pool1 | tissues | 2 |
| 10012-101C3 | brain, adult, pool1 | tissues | 2 |
| 10013-101C4 | cervix, adult, pool1 | tissues | 2 |
| 10014-101C5 | colon, adult, pool1 | tissues | 2 |
| 10015-101C6 | esophagus, adult, pool1 | tissues | 2 |
| 10016-101C7 | heart, adult, pool1 | tissues | 2 |
| 10017-101C8 | kidney, adult, pool1 | tissues | 2 |
| 10018-101C9 | liver, adult, pool1 | tissues | 2 |
| 10019-101D1 | lung, adult, pool1 | tissues | 2 |
| FF ontology id | Name | Sample category | Datafreeze phase |
|---|---|---|---|
| 10000-101A1 | Clontech Human Universal Reference Total RNA, pool1 | tissues | 2 |
| 10001-101A3 | Clontech Mouse Universal Reference Total RNA, pool1 | tissues | 2 |
| 10002-101A5 | SABiosciences XpressRef Human Universal Total RNA, pool1 | tissues | 2 |
| 10003-101A7 | SABiosciences XpressRef Mouse Universal Total RNA, pool1 | tissues | 2 |
| 10004-101A9 | chicken embryo whole body, day10 (HH37) | tissues | -1 |
| 10005-101B1 | {{{name}}} | {{{sample_category}}} | -1 |
| 10006-101B2 | Universal RNA - Dog Normal Tissues Biochain, pool1 | tissues | -1 |
| 10007-101B4 | Universal RNA - Human Normal Tissues Biochain, pool1 | tissues | 2 |
| 10008-101B6 | Universal RNA - Mouse Normal Tissues Biochain, pool1 | tissues | 2 |
| 10009-101B8 | Universal RNA - Rat Normal Tissues Biochain, pool1 | tissues | -1 |
| 10010-101C1 | adipose tissue, adult, pool1 | tissues | 2 |
| 10011-101C2 | bladder, adult, pool1 | tissues | 2 |
| 10012-101C3 | brain, adult, pool1 | tissues | 2 |
| 10013-101C4 | cervix, adult, pool1 | tissues | 2 |
| 10014-101C5 | colon, adult, pool1 | tissues | 2 |
| 10015-101C6 | esophagus, adult, pool1 | tissues | 2 |
| 10016-101C7 | heart, adult, pool1 | tissues | 2 |
| 10017-101C8 | kidney, adult, pool1 | tissues | 2 |
| 10018-101C9 | liver, adult, pool1 | tissues | 2 |
| 10019-101D1 | lung, adult, pool1 | tissues | 2 |
| FF ontology id | Name | Sample category | Datafreeze phase |
|---|---|---|---|
| 10000-101A1 | Clontech Human Universal Reference Total RNA, pool1 | tissues | 2 |
| 10001-101A3 | Clontech Mouse Universal Reference Total RNA, pool1 | tissues | 2 |
| 10002-101A5 | SABiosciences XpressRef Human Universal Total RNA, pool1 | tissues | 2 |
| 10003-101A7 | SABiosciences XpressRef Mouse Universal Total RNA, pool1 | tissues | 2 |
| 10004-101A9 | chicken embryo whole body, day10 (HH37) | tissues | -1 |
| 10005-101B1 | {{{name}}} | {{{sample_category}}} | -1 |
| 10006-101B2 | Universal RNA - Dog Normal Tissues Biochain, pool1 | tissues | -1 |
| 10007-101B4 | Universal RNA - Human Normal Tissues Biochain, pool1 | tissues | 2 |
| 10008-101B6 | Universal RNA - Mouse Normal Tissues Biochain, pool1 | tissues | 2 |
| 10009-101B8 | Universal RNA - Rat Normal Tissues Biochain, pool1 | tissues | -1 |
| 10010-101C1 | adipose tissue, adult, pool1 | tissues | 2 |
| 10011-101C2 | bladder, adult, pool1 | tissues | 2 |
| 10012-101C3 | brain, adult, pool1 | tissues | 2 |
| 10013-101C4 | cervix, adult, pool1 | tissues | 2 |
| 10014-101C5 | colon, adult, pool1 | tissues | 2 |
| 10015-101C6 | esophagus, adult, pool1 | tissues | 2 |
| 10016-101C7 | heart, adult, pool1 | tissues | 2 |
| 10017-101C8 | kidney, adult, pool1 | tissues | 2 |
| 10018-101C9 | liver, adult, pool1 | tissues | 2 |
| 10019-101D1 | lung, adult, pool1 | tissues | 2 |
