FFCP PHASE1:Hg19::chr10:72083665..72083701,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55222|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=23421|TSSclassifier=S|UniProt=|association_with_transcript=18bp_to_AL122117_5end|coexpression_cluster_id=C5|description=CAGE_peak_2_at_LRRC20_5end|id=chr10:72083665..72083701,-|ontology_enrichment_celltype=CL:0000181!3.94e-16!12;CL:0000417!3.94e-16!12;CL:0000668!3.94e-16!12;CL:0000414!3.94e-16!12;CL:0000412!3.94e-16!12;CL:0000182!3.94e-16!12|ontology_enrichment_celltype_v019=CL:0000182;3.64e-67;12!CL:0002593;2.02e-09;2|ontology_enrichment_celltype_v019_2=CL:0000182,3.30e-67,12;CL:0000223,1.03e-13,58;CL:0002593,2.02e-09,2|ontology_enrichment_development_v019=UBERON:0004161;9.95e-54;11!UBERON:0009497;1.77e-45;13!UBERON:0001041;1.05e-19;30!UBERON:0003104;4.04e-19;31!CL:0000223;2.61e-09;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:7;9.18e-07;39|ontology_enrichment_disease_v019_2=DOID:7,3.95e-07,39|ontology_enrichment_uberon=UBERON:0002107!4.32e-16!19;UBERON:0006925!4.32e-16!19;UBERON:0008836!4.32e-16!19;UBERON:0008835!1.20e-13!22;UBERON:0003894!1.20e-13!22;UBERON:0009854!5.64e-13!23;UBERON:0007499!8.58e-12!25;UBERON:0009497!8.58e-12!25;UBERON:0000015!8.58e-12!25;UBERON:0002423!8.58e-12!25;UBERON:0006235!8.58e-12!25;UBERON:0004161!8.58e-12!25;UBERON:0005057!2.86e-11!26;UBERON:0009856!2.86e-11!26;UBERON:0002365!3.15e-11!31;UBERON:0002330!3.15e-11!31;UBERON:0002368!1.14e-09!35;UBERON:0000949!1.73e-08!45;UBERON:0002530!2.10e-08!59;UBERON:0003929!4.39e-08!54;UBERON:0002417!6.85e-07!61;UBERON:0000916!6.85e-07!61|ontology_enrichment_uberon_v019=UBERON:0002107;1.02e-69;19!UBERON:0006925;1.02e-69;19!UBERON:0002423;6.66e-53;25!UBERON:0002365;2.98e-41;31!UBERON:0002330;2.98e-41;31!UBERON:0002368;3.41e-36;33!UBERON:0000949;6.81e-26;43!UBERON:0005172;9.11e-16;52!UBERON:0005173;9.11e-16;52!UBERON:0002417;1.32e-14;58!UBERON:0000916;1.32e-14;58!UBERON:0002530;7.10e-13;57!UBERON:0002456;2.02e-09;2!UBERON:0001007;1.35e-08;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.02e-69,19;UBERON:0006925,1.02e-69,19;UBERON:0008836,1.02e-69,19;UBERON:0008835,3.63e-60,22;UBERON:0003894,3.63e-60,22;UBERON:0009854,1.55e-57,23;UBERON:0007499,6.67e-53,25;UBERON:0009497,6.67e-53,25;UBERON:0000015,6.67e-53,25;UBERON:0002423,6.67e-53,25;UBERON:0006235,6.67e-53,25;UBERON:0004161,6.67e-53,25;UBERON:0009856,7.47e-51,26;UBERON:0002365,1.39e-42,31;UBERON:0002330,1.39e-42,31;UBERON:0002368,1.15e-37,35;UBERON:0000949,3.45e-29,45;UBERON:0003929,3.11e-24,54;UBERON:0005172,3.11e-24,54;UBERON:0005173,3.11e-24,54;UBERON:0002530,3.93e-22,59;UBERON:0002417,9.39e-22,60;UBERON:0000916,9.39e-22,60;UBERON:0005911,9.46e-16,82;UBERON:0001041,8.30e-15,87;UBERON:0009569,5.00e-14,112;UBERON:0003914,2.15e-13,117;UBERON:0005256,8.21e-13,122;UBERON:0005177,1.17e-12,101;UBERON:0004921,1.24e-10,118;UBERON:0000490,2.06e-10,148;UBERON:0003104,1.45e-09,160;UBERON:0009142,1.45e-09,160;UBERON:0002456,2.02e-09,2;UBERON:0001007,1.60e-08,145;UBERON:0001555,1.60e-08,145;UBERON:0007026,1.60e-08,145;UBERON:0000025,9.00e-08,192;UBERON:0001048,1.05e-07,160;UBERON:0004119,1.18e-07,160;UBERON:0000925,1.18e-07,160;UBERON:0006595,1.18e-07,160;UBERON:0002100,1.65e-07,199|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.4914097501126,21.6221987669078,12.4065880403095,0.441463099414651,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.87333766392017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62564786291911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0,0.0671834724867263,0,4.65983798109815,19.5382292121915,21.9226183293903,19.7492383492762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55222 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23421 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=18bp_to_AL122117_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_LRRC20_5end | |||
|id=chr10:72083665..72083701,- | |||
|ontology_enrichment_celltype=CL:0000181!3.94e-16!12;CL:0000417!3.94e-16!12;CL:0000668!3.94e-16!12;CL:0000414!3.94e-16!12;CL:0000412!3.94e-16!12;CL:0000182!3.94e-16!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;3.64e-67;12!CL:0002593;2.02e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.30e-67,12;CL:0000223,1.03e-13,58;CL:0002593,2.02e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;9.95e-54;11!UBERON:0009497;1.77e-45;13!UBERON:0001041;1.05e-19;30!UBERON:0003104;4.04e-19;31!CL:0000223;2.61e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;9.18e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,3.95e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002107!4.32e-16!19;UBERON:0006925!4.32e-16!19;UBERON:0008836!4.32e-16!19;UBERON:0008835!1.20e-13!22;UBERON:0003894!1.20e-13!22;UBERON:0009854!5.64e-13!23;UBERON:0007499!8.58e-12!25;UBERON:0009497!8.58e-12!25;UBERON:0000015!8.58e-12!25;UBERON:0002423!8.58e-12!25;UBERON:0006235!8.58e-12!25;UBERON:0004161!8.58e-12!25;UBERON:0005057!2.86e-11!26;UBERON:0009856!2.86e-11!26;UBERON:0002365!3.15e-11!31;UBERON:0002330!3.15e-11!31;UBERON:0002368!1.14e-09!35;UBERON:0000949!1.73e-08!45;UBERON:0002530!2.10e-08!59;UBERON:0003929!4.39e-08!54;UBERON:0002417!6.85e-07!61;UBERON:0000916!6.85e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.02e-69;19!UBERON:0006925;1.02e-69;19!UBERON:0002423;6.66e-53;25!UBERON:0002365;2.98e-41;31!UBERON:0002330;2.98e-41;31!UBERON:0002368;3.41e-36;33!UBERON:0000949;6.81e-26;43!UBERON:0005172;9.11e-16;52!UBERON:0005173;9.11e-16;52!UBERON:0002417;1.32e-14;58!UBERON:0000916;1.32e-14;58!UBERON:0002530;7.10e-13;57!UBERON:0002456;2.02e-09;2!UBERON:0001007;1.35e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.02e-69,19;UBERON:0006925,1.02e-69,19;UBERON:0008836,1.02e-69,19;UBERON:0008835,3.63e-60,22;UBERON:0003894,3.63e-60,22;UBERON:0009854,1.55e-57,23;UBERON:0007499,6.67e-53,25;UBERON:0009497,6.67e-53,25;UBERON:0000015,6.67e-53,25;UBERON:0002423,6.67e-53,25;UBERON:0006235,6.67e-53,25;UBERON:0004161,6.67e-53,25;UBERON:0009856,7.47e-51,26;UBERON:0002365,1.39e-42,31;UBERON:0002330,1.39e-42,31;UBERON:0002368,1.15e-37,35;UBERON:0000949,3.45e-29,45;UBERON:0003929,3.11e-24,54;UBERON:0005172,3.11e-24,54;UBERON:0005173,3.11e-24,54;UBERON:0002530,3.93e-22,59;UBERON:0002417,9.39e-22,60;UBERON:0000916,9.39e-22,60;UBERON:0005911,9.46e-16,82;UBERON:0001041,8.30e-15,87;UBERON:0009569,5.00e-14,112;UBERON:0003914,2.15e-13,117;UBERON:0005256,8.21e-13,122;UBERON:0005177,1.17e-12,101;UBERON:0004921,1.24e-10,118;UBERON:0000490,2.06e-10,148;UBERON:0003104,1.45e-09,160;UBERON:0009142,1.45e-09,160;UBERON:0002456,2.02e-09,2;UBERON:0001007,1.60e-08,145;UBERON:0001555,1.60e-08,145;UBERON:0007026,1.60e-08,145;UBERON:0000025,9.00e-08,192;UBERON:0001048,1.05e-07,160;UBERON:0004119,1.18e-07,160;UBERON:0000925,1.18e-07,160;UBERON:0006595,1.18e-07,160;UBERON:0002100,1.65e-07,199 | |||
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|short_description=p2@LRRC20 | |||
}} |
Revision as of 14:10, 10 September 2013
Short description: | p2@LRRC20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LRRC20_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 18bp_to_AL122117_5end |
EntrezGene: | LRRC20 |
HGNC: | 23421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.30e-67 | 12 |
endodermal cell | 1.03e-13 | 58 |
smooth muscle cell of the internal thoracic artery | 2.02e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 3.95e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.