FFCP PHASE1:Hg19::chr12:54431720..54431732,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3221|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5126|TSSclassifier=S|UniProt=|association_with_transcript=82bp_to_ENST00000507650_5end|coexpression_cluster_id=C89|description=CAGE_peak_13_at_HOXC4_5end|id=chr12:54431720..54431732,+|ontology_enrichment_celltype=CL:0002566!4.07e-08!1;CL:0000188!1.24e-07!9|ontology_enrichment_celltype_v019=CL:0002253;7.14e-26;2!CL:0002563;1.13e-13;4!CL:0000062;8.37e-07;9|ontology_enrichment_celltype_v019_2=CL:0002253,9.18e-26,2;CL:0002563,1.29e-13,4|ontology_enrichment_development_v019=UBERON:0003104;1.21e-07;31|ontology_enrichment_disease=DOID:2355!1.59e-08!1|ontology_enrichment_disease_v019=DOID:5409;8.81e-14;4!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9|ontology_enrichment_disease_v019_2=DOID:5409,8.82e-14,4;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:3905,7.48e-07,9|ontology_enrichment_uberon=UBERON:0000489!3.12e-10!32;UBERON:0002113!3.74e-09!27;UBERON:0003918!3.74e-09!27;UBERON:0005095!3.74e-09!27;UBERON:0007687!3.74e-09!27;UBERON:0001301!2.29e-08!1|ontology_enrichment_uberon_v019=UBERON:0001052;1.13e-13;4!UBERON:0001242;1.13e-13;4!UBERON:0001262;1.13e-13;4!UBERON:0004786;1.13e-13;4!UBERON:0004808;1.13e-13;4!UBERON:0001277;1.13e-13;4!UBERON:0004907;3.26e-11;5!UBERON:0000485;2.18e-08;7!UBERON:0003929;2.18e-08;7!UBERON:0003350;1.69e-07;8!UBERON:0001155;8.37e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001052,1.29e-13,4;UBERON:0001242,1.29e-13,4;UBERON:0001262,1.29e-13,4;UBERON:0004786,1.29e-13,4;UBERON:0004808,1.29e-13,4;UBERON:0001277,1.29e-13,4;UBERON:0004907,3.60e-11,5;UBERON:0003350,1.80e-07,8;UBERON:0001155,8.85e-07,9;UBERON:0000485,8.85e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0.0852266274161009,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0.976940477010201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.24582959613137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901940516486955,3.7327748903009,0,0,0,0,0.284609546029793,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310482014706917,0.276697269872462,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38157577597667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.13559823916176,0,0.154348316215889,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p13@HOXC4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3221 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5126 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=82bp_to_ENST00000507650_5end | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_13_at_HOXC4_5end | |||
|id=chr12:54431720..54431732,+ | |||
|ontology_enrichment_celltype=CL:0002566!4.07e-08!1;CL:0000188!1.24e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002253;7.14e-26;2!CL:0002563;1.13e-13;4!CL:0000062;8.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,9.18e-26,2;CL:0002563,1.29e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.21e-07;31 | |||
|ontology_enrichment_disease=DOID:2355!1.59e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;8.81e-14;4!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,8.82e-14,4;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:3905,7.48e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000489!3.12e-10!32;UBERON:0002113!3.74e-09!27;UBERON:0003918!3.74e-09!27;UBERON:0005095!3.74e-09!27;UBERON:0007687!3.74e-09!27;UBERON:0001301!2.29e-08!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001052;1.13e-13;4!UBERON:0001242;1.13e-13;4!UBERON:0001262;1.13e-13;4!UBERON:0004786;1.13e-13;4!UBERON:0004808;1.13e-13;4!UBERON:0001277;1.13e-13;4!UBERON:0004907;3.26e-11;5!UBERON:0000485;2.18e-08;7!UBERON:0003929;2.18e-08;7!UBERON:0003350;1.69e-07;8!UBERON:0001155;8.37e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,1.29e-13,4;UBERON:0001242,1.29e-13,4;UBERON:0001262,1.29e-13,4;UBERON:0004786,1.29e-13,4;UBERON:0004808,1.29e-13,4;UBERON:0001277,1.29e-13,4;UBERON:0004907,3.60e-11,5;UBERON:0003350,1.80e-07,8;UBERON:0001155,8.85e-07,9;UBERON:0000485,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0.0852266274161009,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0.976940477010201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.24582959613137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901940516486955,3.7327748903009,0,0,0,0,0.284609546029793,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310482014706917,0.276697269872462,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38157577597667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.13559823916176,0,0.154348316215889,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p13@HOXC4 | |||
}} |
Revision as of 23:21, 10 September 2013
Short description: | p13@HOXC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_HOXC4_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 82bp_to_ENST00000507650_5end |
EntrezGene: | HOXC4 |
HGNC: | 5126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 9.18e-26 | 2 |
intestinal epithelial cell | 1.29e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
rectum | 1.29e-13 | 4 |
intestinal mucosa | 1.29e-13 | 4 |
wall of intestine | 1.29e-13 | 4 |
gastrointestinal system mucosa | 1.29e-13 | 4 |
gastrointestinal system epithelium | 1.29e-13 | 4 |
intestinal epithelium | 1.29e-13 | 4 |
lower digestive tract | 3.60e-11 | 5 |
epithelium of mucosa | 1.80e-07 | 8 |
colon | 8.85e-07 | 9 |
simple columnar epithelium | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 8.82e-14 | 4 |
bronchus cancer | 1.89e-08 | 7 |
bronchogenic carcinoma | 1.89e-08 | 7 |
lung carcinoma | 7.48e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.