FFCP PHASE1:Hg19::chr13:41745362..41745368,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=1448|TSSclassifier=S|UniProt=|association_with_transcript=-78bp_to_ENST00000400429_5end|coexpression_cluster_id=C1019|description=CAGE_peak_1_at_CALM2P3_5end|id=chr13:41745362..41745368,-|ontology_enrichment_celltype=CL:0002057!1.36e-15!42;CL:0000839!1.19e-14!70;CL:0002009!3.31e-14!65;CL:0000860!3.76e-14!45;CL:0000557!8.51e-14!71;CL:0002194!1.25e-13!63;CL:0000576!1.25e-13!63;CL:0000040!1.25e-13!63;CL:0000559!1.25e-13!63;CL:0000766!1.35e-12!76;CL:0002031!4.48e-09!124;CL:0000763!7.09e-09!112;CL:0000049!7.09e-09!112;CL:0000738!6.48e-08!140|ontology_enrichment_celltype_v019=CL:0000860;4.99e-18;33!CL:0002057;4.99e-18;33!CL:0000473;1.19e-15;39!CL:0000234;1.19e-15;39!CL:0000576;2.29e-12;48!CL:0000766;2.26e-08;69|ontology_enrichment_celltype_v019_2=CL:0000473,4.09e-25,48;CL:0000234,4.09e-25,48;CL:0000860,3.16e-24,42;CL:0002057,3.16e-24,42;CL:0002009,2.03e-18,61;CL:0000839,2.81e-18,66;CL:0002194,6.27e-18,59;CL:0000576,6.27e-18,59;CL:0000040,6.27e-18,59;CL:0000559,6.27e-18,59;CL:0000557,7.39e-17,67;CL:0000766,4.36e-16,72;CL:0000763,2.41e-13,108;CL:0000049,2.41e-13,108;CL:0000738,6.21e-10,136;CL:0002031,7.32e-10,120;CL:0000037,2.35e-08,168;CL:0002032,3.36e-08,161;CL:0000837,3.36e-08,161;CL:0002087,3.74e-08,115;CL:0000988,2.60e-07,177|ontology_enrichment_development_v019=CL:0002057;3.72e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!6.99e-14!80;UBERON:0004765!7.69e-13!101;UBERON:0001434!7.69e-13!101;UBERON:0001474!1.51e-12!86;UBERON:0002390!1.73e-09!102;UBERON:0003061!1.73e-09!102;UBERON:0002204!2.82e-07!167;UBERON:0002193!5.23e-07!112;UBERON:0002405!8.90e-07!115|ontology_enrichment_uberon_v019=UBERON:0001737;2.15e-08;9!UBERON:0001557;2.15e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.25e-17,76;UBERON:0001474,7.16e-15,82;UBERON:0004765,1.46e-14,90;UBERON:0001434,1.67e-13,100;UBERON:0002390,3.63e-12,98;UBERON:0003061,3.63e-12,98;UBERON:0002405,7.81e-12,93;UBERON:0002193,4.84e-10,108;UBERON:0002204,6.13e-09,167;UBERON:0001737,9.71e-09,9|phase1_expression=0.181678379270557,0,0.704772020479856,1.0007329835313,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0.263766978228454,0.618831764800233,0.331397375727916,6.05092631806598,4.21886169616784,2.19093027116212,2.92759679274304,0.492484232307152,0,0,0.286235987131057,0.684372125364421,0.251085279189606,0.0764134057479513,0.0821005894499457,0.157421562627358,0.393364276848904,0,2.01260960310899,0,0,0.739508020333575,0.309868802321207,0.426507697462265,1.17440175733939,0,0,0.217010870715852,0.895661896959697,0,0.515151135268373,1.45398238779565,1.51150377475524,2.42584061187816,1.16214518452842,0.822335776043652,1.85823822537062,0.863077176966451,1.2808035326455,3.54723344832878,1.37898272294647,0.645484683583826,1.35426486594342,2.07066573496865,0.818718450173537,3.14612878223118,2.44867113896722,1.60464513538047,2.55734850319616,4.28806690242731,1.79517291859469,2.13112375266347,0.580418477257168,1.13477044938228,0.622822248995575,1.50749199154046,1.0429658368404,1.95469960234605,2.42159801053347,0.368277635987565,0.632924774881769,3.59133986730301,4.25208599930087,4.82214884669265,1.34794357375794,3.45406853535464,2.57160938715328,2.85012743741249,4.77400025277816,4.01861138282195,1.75996244461323,0.546138611262131,0.889509253863555,1.28019066769952,0.400395987036012,1.72425731986345,1.98313461835459,0.954053754535364,0,0,0.382273228125229,0,0,1.58030450865046,0.196709770113833,0,0.205601498999509,0.83593247695339,0,0.946895611469467,1.94826728407911,1.00269411196656,2.06224135232386,0.443067789167242,1.08321545506006,0.768547918354051,1.1705341280389,0.493313713811028,0.829050053357545,0.579606171470105,1.4828656316206,1.87278579662799,0,1.47302145506836,0.766440987203842,0.68725489096526,2.27717722817553,0.318565414324097,0.651083453856419,0.950452044448374,0.903450714466637,0.639933055772092,1.24930726552346,0,0,0.201606743224732,0,0,0,0.670700859703636,1.15076305659177,0.722878304769133,0.50133791063589,0,0,0.486634870302636,0.283604451492204,0.221729397462564,0.175669571386252,0.196468613246569,0,0,0.97364218096405,0.522389211897802,0.26591592103773,0.238490624305342,0,1.85728750664782,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,1.13967460498122,1.72131935057184,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0,0.269421344139376,0.817309515567294,0.151357427644931,0.576175924479999,0.234321431833797,0.312160076830321,0,0,0.352303495931295,0.323745888736263,0,0.408308342509787,0.122834317311768,0,0,0,0,0,0.841680569770331,0.250237039743928,0,0.438977620880838,0.612975591598039,0.150238058906597,0.113432183160021,0.538168907066586,0.213557388818567,0.211931901159562,0,0.412210116953756,0.772921620136887,0.37223371266318,1.35021065793013,0.876933046450788,0.252433774244115,0.184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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=1448 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-78bp_to_ENST00000400429_5end | |||
|coexpression_cluster_id=C1019 | |||
|description=CAGE_peak_1_at_CALM2P3_5end | |||
|id=chr13:41745362..41745368,- | |||
|ontology_enrichment_celltype=CL:0002057!1.36e-15!42;CL:0000839!1.19e-14!70;CL:0002009!3.31e-14!65;CL:0000860!3.76e-14!45;CL:0000557!8.51e-14!71;CL:0002194!1.25e-13!63;CL:0000576!1.25e-13!63;CL:0000040!1.25e-13!63;CL:0000559!1.25e-13!63;CL:0000766!1.35e-12!76;CL:0002031!4.48e-09!124;CL:0000763!7.09e-09!112;CL:0000049!7.09e-09!112;CL:0000738!6.48e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.99e-18;33!CL:0002057;4.99e-18;33!CL:0000473;1.19e-15;39!CL:0000234;1.19e-15;39!CL:0000576;2.29e-12;48!CL:0000766;2.26e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.09e-25,48;CL:0000234,4.09e-25,48;CL:0000860,3.16e-24,42;CL:0002057,3.16e-24,42;CL:0002009,2.03e-18,61;CL:0000839,2.81e-18,66;CL:0002194,6.27e-18,59;CL:0000576,6.27e-18,59;CL:0000040,6.27e-18,59;CL:0000559,6.27e-18,59;CL:0000557,7.39e-17,67;CL:0000766,4.36e-16,72;CL:0000763,2.41e-13,108;CL:0000049,2.41e-13,108;CL:0000738,6.21e-10,136;CL:0002031,7.32e-10,120;CL:0000037,2.35e-08,168;CL:0002032,3.36e-08,161;CL:0000837,3.36e-08,161;CL:0002087,3.74e-08,115;CL:0000988,2.60e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;3.72e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.99e-14!80;UBERON:0004765!7.69e-13!101;UBERON:0001434!7.69e-13!101;UBERON:0001474!1.51e-12!86;UBERON:0002390!1.73e-09!102;UBERON:0003061!1.73e-09!102;UBERON:0002204!2.82e-07!167;UBERON:0002193!5.23e-07!112;UBERON:0002405!8.90e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.15e-08;9!UBERON:0001557;2.15e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.25e-17,76;UBERON:0001474,7.16e-15,82;UBERON:0004765,1.46e-14,90;UBERON:0001434,1.67e-13,100;UBERON:0002390,3.63e-12,98;UBERON:0003061,3.63e-12,98;UBERON:0002405,7.81e-12,93;UBERON:0002193,4.84e-10,108;UBERON:0002204,6.13e-09,167;UBERON:0001737,9.71e-09,9 | |||
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| |||
|short_description=p1@CALM2P3 | |||
}} |
Revision as of 02:13, 11 September 2013
Short description: | p1@CALM2P3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CALM2P3_5end |
Coexpression cluster: | C1019_occipital_medial_amygdala_caudate_hippocampus_cerebellum_parietal |
Association with transcript: | -78bp_to_ENST00000400429_5end |
EntrezGene: | NA |
HGNC: | 1448 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.09e-25 | 48 |
phagocyte | 4.09e-25 | 48 |
classical monocyte | 3.16e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.16e-24 | 42 |
macrophage dendritic cell progenitor | 2.03e-18 | 61 |
myeloid lineage restricted progenitor cell | 2.81e-18 | 66 |
monopoietic cell | 6.27e-18 | 59 |
monocyte | 6.27e-18 | 59 |
monoblast | 6.27e-18 | 59 |
promonocyte | 6.27e-18 | 59 |
granulocyte monocyte progenitor cell | 7.39e-17 | 67 |
myeloid leukocyte | 4.36e-16 | 72 |
myeloid cell | 2.41e-13 | 108 |
common myeloid progenitor | 2.41e-13 | 108 |
leukocyte | 6.21e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 7.32e-10 | 120 |
hematopoietic stem cell | 2.35e-08 | 168 |
hematopoietic oligopotent progenitor cell | 3.36e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.36e-08 | 161 |
nongranular leukocyte | 3.74e-08 | 115 |
hematopoietic cell | 2.60e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.25e-17 | 76 |
bone element | 7.16e-15 | 82 |
skeletal element | 1.46e-14 | 90 |
skeletal system | 1.67e-13 | 100 |
hematopoietic system | 3.63e-12 | 98 |
blood island | 3.63e-12 | 98 |
immune system | 7.81e-12 | 93 |
hemolymphoid system | 4.84e-10 | 108 |
musculoskeletal system | 6.13e-09 | 167 |
larynx | 9.71e-09 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.