FFCP PHASE1:Hg19::chr19:35739871..35739882,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51599|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29572|TSSclassifier=S|UniProt=B4DKL4|association_with_transcript=-22bp_to_ENST00000427250_5end|coexpression_cluster_id=C1817|description=CAGE_peak_3_at_LSR_5end|id=chr19:35739871..35739882,+|ontology_enrichment_celltype=CL:0000066!5.63e-24!254;CL:0002076!2.25e-11!43;CL:0000223!3.18e-11!59|ontology_enrichment_celltype_v019=CL:0002076;5.76e-10;42!CL:1000497;3.34e-07;17!CL:0002518;3.34e-07;17|ontology_enrichment_celltype_v019_2=CL:0000066,5.17e-26,253;CL:0000223,1.88e-12,58;CL:0002076,3.29e-12,42;CL:1000497,3.57e-07,17;CL:0002518,3.57e-07,17|ontology_enrichment_development_v019=CL:0000223;2.77e-07;58|ontology_enrichment_disease=DOID:305!5.25e-21!106;DOID:0050687!3.77e-13!143;DOID:1749!4.05e-08!14;DOID:299!5.39e-08!25|ontology_enrichment_disease_v019=DOID:1749;4.64e-09;14!DOID:299;9.66e-09;25!DOID:305;7.68e-07;106|ontology_enrichment_disease_v019_2=DOID:305,5.07e-20,106;DOID:0050687,7.06e-13,143;DOID:1749,5.83e-09,14;DOID:299,9.20e-09,25|ontology_enrichment_uberon=UBERON:0004119!1.31e-15!169;UBERON:0000925!1.31e-15!169;UBERON:0006595!1.31e-15!169;UBERON:0005177!2.54e-13!107;UBERON:0001007!9.67e-12!155;UBERON:0001555!9.67e-12!155;UBERON:0007026!9.67e-12!155;UBERON:0004921!1.76e-11!129;UBERON:0004185!1.76e-11!129;UBERON:0000077!2.00e-10!130;UBERON:0001008!7.78e-10!45;UBERON:0000466!1.06e-09!126;UBERON:0006554!1.27e-09!44;UBERON:0007023!2.16e-09!115;UBERON:0001041!2.88e-09!98;UBERON:0005172!6.71e-09!55;UBERON:0005173!6.71e-09!55;UBERON:0000464!7.60e-09!104;UBERON:0005911!1.06e-08!82;UBERON:0000489!1.24e-08!32;UBERON:0001004!1.75e-08!72;UBERON:0009569!1.99e-08!113;UBERON:0002113!3.61e-08!27;UBERON:0003918!3.61e-08!27;UBERON:0005095!3.61e-08!27;UBERON:0007687!3.61e-08!27;UBERON:0000058!2.24e-07!26;UBERON:0000064!4.31e-07!219;UBERON:0000065!7.22e-07!53|ontology_enrichment_uberon_v019=UBERON:0006554;1.97e-11;30!UBERON:0001008;1.97e-11;30!UBERON:0002113;2.83e-08;24!UBERON:0011143;2.83e-08;24!UBERON:0000489;8.24e-08;29!UBERON:0004807;9.35e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0005177,9.08e-16,101;UBERON:0004119,1.76e-15,160;UBERON:0000925,1.76e-15,160;UBERON:0006595,1.76e-15,160;UBERON:0001008,5.47e-14,48;UBERON:0006554,9.55e-14,47;UBERON:0001007,1.89e-11,145;UBERON:0001555,1.89e-11,145;UBERON:0007026,1.89e-11,145;UBERON:0009569,6.60e-11,112;UBERON:0004921,7.01e-11,118;UBERON:0005172,2.17e-10,54;UBERON:0005173,2.17e-10,54;UBERON:0005911,4.04e-10,82;UBERON:0002113,1.50e-09,26;UBERON:0003918,1.50e-09,26;UBERON:0011143,1.50e-09,26;UBERON:0005095,1.50e-09,26;UBERON:0007687,1.50e-09,26;UBERON:0000489,4.52e-09,31;UBERON:0001041,4.72e-08,87;UBERON:0002417,5.54e-08,60;UBERON:0000916,5.54e-08,60;UBERON:0005631,2.28e-07,14;UBERON:0000158,2.28e-07,14;UBERON:0005153,4.65e-07,37|phase1_expression=0,0,0,0,0,0,0,0,0,11.5494950155709,29.307649054842,7.64544802455603,11.8695140202804,0,0,0,0,0,0,0,0,0,0,0,0,3.43860325865781,3.11982239909794,2.83358812729245,0,0,1.23852898652861,3.67768489791571,8.73497164456925,8.8740962440029,1.62681121218633,1.27952309238679,0.293600439334847,1.10799081706375,0.401088894940283,0.868043482863407,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,2.18455444504853,2.66852776159066,1.70692089026603,1.20118796110804,1.14950487990897,2.64417949113945,0.954053754535364,1.70763890732835,2.34894875748376,3.05818582500183,2.64342657158052,1.12101712596307,0,9.44206896546399,9.03924754323079,10.485676448975,5.3499678525017,12.0591238654428,15.6237775892462,7.79306913631645,2.89667187901451,5.00830042707223,7.97522020501036,2.97884250141517,5.37983542847836,5.59255194507476,0.328875809207352,0.829050053357545,0,5.33831627383417,5.35081656179426,6.27213142829861,0.566546713487831,2.29932296161153,8.24705869158312,2.78321661221453,4.14135038621326,3.90650072313851,6.65316431113862,4.36667845325541,5.88738411310325,1.24930726552346,5.91943130110042,4.92676798152628,5.44338206706778,4.54648332831962,6.95157138637435,0,0,0.383587685530591,0,0,0,0,0,0.567208902984407,0.886917589850256,1.22968699970376,3.40545596294053,20.4005361443824,13.7190243830239,1.29818957461873,1.0447784237956,1.19662164466979,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,12.210633459991,0,0,0,0,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.08326009867495,9.27336810008838,12.6194021971162,2.80539524098069,2.51806559810822,3.36962434321603,2.38420426535352,3.28017106138317,4.37972830890996,0,0,0,0,0,1.77460200059766,0.168584690078102,0.482022059766964,0.992645754591546,0.653638332277218,0.71181185733329,0.134831308160164,0.392442930250692,1.53898862778556,0,0,1.6462960453256,0,11.4079531339648,5.89696330006576,1.181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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51599 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |||
|TSSclassifier=S | |||
|UniProt=B4DKL4 | |||
|association_with_transcript=-22bp_to_ENST00000427250_5end | |||
|coexpression_cluster_id=C1817 | |||
|description=CAGE_peak_3_at_LSR_5end | |||
|id=chr19:35739871..35739882,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.63e-24!254;CL:0002076!2.25e-11!43;CL:0000223!3.18e-11!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.76e-10;42!CL:1000497;3.34e-07;17!CL:0002518;3.34e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.17e-26,253;CL:0000223,1.88e-12,58;CL:0002076,3.29e-12,42;CL:1000497,3.57e-07,17;CL:0002518,3.57e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;2.77e-07;58 | |||
|ontology_enrichment_disease=DOID:305!5.25e-21!106;DOID:0050687!3.77e-13!143;DOID:1749!4.05e-08!14;DOID:299!5.39e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.64e-09;14!DOID:299;9.66e-09;25!DOID:305;7.68e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.07e-20,106;DOID:0050687,7.06e-13,143;DOID:1749,5.83e-09,14;DOID:299,9.20e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.31e-15!169;UBERON:0000925!1.31e-15!169;UBERON:0006595!1.31e-15!169;UBERON:0005177!2.54e-13!107;UBERON:0001007!9.67e-12!155;UBERON:0001555!9.67e-12!155;UBERON:0007026!9.67e-12!155;UBERON:0004921!1.76e-11!129;UBERON:0004185!1.76e-11!129;UBERON:0000077!2.00e-10!130;UBERON:0001008!7.78e-10!45;UBERON:0000466!1.06e-09!126;UBERON:0006554!1.27e-09!44;UBERON:0007023!2.16e-09!115;UBERON:0001041!2.88e-09!98;UBERON:0005172!6.71e-09!55;UBERON:0005173!6.71e-09!55;UBERON:0000464!7.60e-09!104;UBERON:0005911!1.06e-08!82;UBERON:0000489!1.24e-08!32;UBERON:0001004!1.75e-08!72;UBERON:0009569!1.99e-08!113;UBERON:0002113!3.61e-08!27;UBERON:0003918!3.61e-08!27;UBERON:0005095!3.61e-08!27;UBERON:0007687!3.61e-08!27;UBERON:0000058!2.24e-07!26;UBERON:0000064!4.31e-07!219;UBERON:0000065!7.22e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.97e-11;30!UBERON:0001008;1.97e-11;30!UBERON:0002113;2.83e-08;24!UBERON:0011143;2.83e-08;24!UBERON:0000489;8.24e-08;29!UBERON:0004807;9.35e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,9.08e-16,101;UBERON:0004119,1.76e-15,160;UBERON:0000925,1.76e-15,160;UBERON:0006595,1.76e-15,160;UBERON:0001008,5.47e-14,48;UBERON:0006554,9.55e-14,47;UBERON:0001007,1.89e-11,145;UBERON:0001555,1.89e-11,145;UBERON:0007026,1.89e-11,145;UBERON:0009569,6.60e-11,112;UBERON:0004921,7.01e-11,118;UBERON:0005172,2.17e-10,54;UBERON:0005173,2.17e-10,54;UBERON:0005911,4.04e-10,82;UBERON:0002113,1.50e-09,26;UBERON:0003918,1.50e-09,26;UBERON:0011143,1.50e-09,26;UBERON:0005095,1.50e-09,26;UBERON:0007687,1.50e-09,26;UBERON:0000489,4.52e-09,31;UBERON:0001041,4.72e-08,87;UBERON:0002417,5.54e-08,60;UBERON:0000916,5.54e-08,60;UBERON:0005631,2.28e-07,14;UBERON:0000158,2.28e-07,14;UBERON:0005153,4.65e-07,37 | |||
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| |||
|short_description=p3@LSR | |||
}} |
Revision as of 20:07, 11 September 2013
Short description: | p3@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | -22bp_to_ENST00000427250_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | B4DKL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.17e-26 | 253 |
endodermal cell | 1.88e-12 | 58 |
endo-epithelial cell | 3.29e-12 | 42 |
kidney cell | 3.57e-07 | 17 |
kidney epithelial cell | 3.57e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 9.08e-16 | 101 |
endoderm-derived structure | 1.76e-15 | 160 |
endoderm | 1.76e-15 | 160 |
presumptive endoderm | 1.76e-15 | 160 |
renal system | 5.47e-14 | 48 |
urinary system structure | 9.55e-14 | 47 |
digestive system | 1.89e-11 | 145 |
digestive tract | 1.89e-11 | 145 |
primitive gut | 1.89e-11 | 145 |
subdivision of trunk | 6.60e-11 | 112 |
subdivision of digestive tract | 7.01e-11 | 118 |
abdomen element | 2.17e-10 | 54 |
abdominal segment element | 2.17e-10 | 54 |
endo-epithelium | 4.04e-10 | 82 |
kidney | 1.50e-09 | 26 |
kidney mesenchyme | 1.50e-09 | 26 |
upper urinary tract | 1.50e-09 | 26 |
kidney rudiment | 1.50e-09 | 26 |
kidney field | 1.50e-09 | 26 |
cavitated compound organ | 4.52e-09 | 31 |
foregut | 4.72e-08 | 87 |
abdominal segment of trunk | 5.54e-08 | 60 |
abdomen | 5.54e-08 | 60 |
extraembryonic membrane | 2.28e-07 | 14 |
membranous layer | 2.28e-07 | 14 |
epithelial bud | 4.65e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.07e-20 | 106 |
cell type cancer | 7.06e-13 | 143 |
squamous cell carcinoma | 5.83e-09 | 14 |
adenocarcinoma | 9.20e-09 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.