FFCP PHASE1:Hg19::chr1:119530930..119530971,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C31|description=CAGE_peak_at_chr1:119530930..119530971,-|id=chr1:119530930..119530971,-|ontology_enrichment_celltype=CL:0002620!6.48e-16!23;CL:0000055!4.18e-15!180;CL:0000057!3.78e-11!75;CL:0000188!3.61e-08!9;CL:0000327!6.17e-08!14;CL:0000153!8.49e-08!9;CL:0000447!8.49e-08!9;CL:0000499!4.96e-07!27|ontology_enrichment_celltype_v019=CL:0002620;1.10e-21;23!CL:0000188;2.16e-11;9!CL:0000153;7.60e-11;9!CL:0000447;7.60e-11;9!CL:0000327;1.33e-10;15!CL:0002570;3.05e-08;8!CL:0000138;4.10e-08;6!CL:0002551;1.63e-07;6!CL:0000062;4.82e-07;9!CL:0000499;4.90e-07;28!CL:0000136;5.92e-07;13|ontology_enrichment_celltype_v019_2=CL:0002620,1.04e-21,23;CL:0000057,6.42e-12,76;CL:0000188,1.99e-11,9;CL:0000153,7.10e-11,9;CL:0000447,7.10e-11,9;CL:0000327,1.20e-10,15;CL:0000136,8.37e-09,15;CL:0002570,2.52e-08,8;CL:0000058,3.92e-08,6;CL:0000138,3.92e-08,6;CL:0002551,1.50e-07,6;CL:0000062,4.02e-07,11;CL:0000375,4.02e-07,11;CL:0000335,4.02e-07,11;CL:0000499,4.73e-07,28|ontology_enrichment_development_v019=CL:0000335;4.03e-07;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;9.76e-08;5!DOID:450;9.76e-08;5!DOID:66;9.76e-08;5!DOID:423;9.76e-08;5!DOID:0080000;9.76e-08;5!DOID:11722;9.76e-08;5|ontology_enrichment_disease_v019_2=DOID:17,9.44e-08,5;DOID:450,9.44e-08,5;DOID:66,9.44e-08,5;DOID:423,9.44e-08,5;DOID:0080000,9.44e-08,5;DOID:11722,9.44e-08,5|ontology_enrichment_uberon=UBERON:0002199!2.73e-13!45;UBERON:0002416!2.73e-13!45;UBERON:0002097!4.64e-12!40;UBERON:0000475!9.46e-08!365;UBERON:0002616!1.20e-07!59;UBERON:0002067!2.11e-07!9;UBERON:0004016!2.11e-07!9;UBERON:0010083!2.11e-07!9;UBERON:0004290!3.45e-07!70;UBERON:0007023!4.17e-07!115;UBERON:0001049!9.45e-07!57;UBERON:0005068!9.45e-07!57;UBERON:0006241!9.45e-07!57;UBERON:0007135!9.45e-07!57|ontology_enrichment_uberon_v019=UBERON:0001134;1.19e-16;16!UBERON:0002036;1.19e-16;16!UBERON:0002097;3.06e-14;41!UBERON:0002199;6.84e-12;46!UBERON:0002416;6.84e-12;46!UBERON:0003102;6.80e-11;50!UBERON:0002067;3.15e-10;9!UBERON:0001013;2.89e-08;14|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.44e-19,46;UBERON:0002416,3.44e-19,46;UBERON:0002097,2.58e-18,41;UBERON:0002067,2.76e-10,9;UBERON:0004016,2.76e-10,9;UBERON:0010083,2.76e-10,9;UBERON:0003102,1.33e-09,99;UBERON:0001013,2.43e-08,14;UBERON:0002384,3.57e-07,371;UBERON:0002329,8.63e-07,71;UBERON:0003059,8.63e-07,71;UBERON:0007282,8.63e-07,71;UBERON:0004290,8.63e-07,71;UBERON:0009618,8.63e-07,71|phase1_expression=8.53888382571616,8.13581990785736,0,4.00293193412522,0,0,0,2.52687949370732,8.61912573059467,0,0,0,0,0,0,0,0,0,0,0,0.408001382488506,0.626909442956176,0,0.410623275218653,1.88313959392204,0,0,0,0,0,2.01260960310899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.26479403160043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,0,0.12786256184353,18.4333967716129,6.01605492763067,10.4289493651793,16.7010048880731,27.7381876072502,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,0.71153252537342,0,0,0.760272105718513,0.488124115096339,0,0,0,0,0,0,0,0.549605231791222,0,0,0,13.9152146474689,0.633152558322899,0.264818361626438,0,0.709336764396714,2.24271040056923,0,0,0.311211035399766,0,0,11.5031645010148,10.37116664064,2.10889288650417,1.87296046098192,5.13424639390004,1.19558944441441,27.8319761785723,21.8528474896978,16.5731951908653,0,0.737005903870608,0,0,0,0,0,0.505008341862199,3.37820003654303,0,0,0,0.150238058906597,0,20.6298081042191,18.5794928272154,11.6562545637759,18.0054657650641,15.8700895027196,11.3361837620077,6.51408997160564,7.08860595413318,4.18979122193154,36.3504634911525,24.8534726334208,0.484938170456436,16.6854508482809,12.3925080819998,5.25637836162512,0,0,0,0.121973706129595,0,0,0.621966330092223,0,0,4.69348596989448,9.64861407289328,5.52539685409922,9.75172648867156,13.7157101517221,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0.982827216677626,0,0,0,0.343135620597051,0,0,0,0,0.325808305310325,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0.37872730027914,0.063497894292169,0,0,0,0.308482478109971,0,0,13.4557301214433,12.6428419961651,8.800594298514,0,10.7296933755565,2.535908257668,0,0,12.3459539645828,0,12.5218424137567,0,0,0,3.58309802723109,0,0,0,0,0,0,0,0,6.23024624278115,21.8237678084816,2.85273810081437,0.579125226670317,1.64381058040307,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,1.03985430765404,0.178428988797162,0.157702415033935,0.234282829985426,19.8624425820294,11.3703752027992,10.3473071292505,7.97070718242524,7.00602840458472,0.695068915744663,8.61525092836058,6.51972505240626,0,0,0,0,0,1.20956117331872,8.43566546583841,22.5589100733452,15.155645099386,0.128139149255701,2.55853624533352,0,0,1.079467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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C31 | |||
|description=CAGE_peak_at_chr1:119530930..119530971,- | |||
|id=chr1:119530930..119530971,- | |||
|ontology_enrichment_celltype=CL:0002620!6.48e-16!23;CL:0000055!4.18e-15!180;CL:0000057!3.78e-11!75;CL:0000188!3.61e-08!9;CL:0000327!6.17e-08!14;CL:0000153!8.49e-08!9;CL:0000447!8.49e-08!9;CL:0000499!4.96e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.10e-21;23!CL:0000188;2.16e-11;9!CL:0000153;7.60e-11;9!CL:0000447;7.60e-11;9!CL:0000327;1.33e-10;15!CL:0002570;3.05e-08;8!CL:0000138;4.10e-08;6!CL:0002551;1.63e-07;6!CL:0000062;4.82e-07;9!CL:0000499;4.90e-07;28!CL:0000136;5.92e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.04e-21,23;CL:0000057,6.42e-12,76;CL:0000188,1.99e-11,9;CL:0000153,7.10e-11,9;CL:0000447,7.10e-11,9;CL:0000327,1.20e-10,15;CL:0000136,8.37e-09,15;CL:0002570,2.52e-08,8;CL:0000058,3.92e-08,6;CL:0000138,3.92e-08,6;CL:0002551,1.50e-07,6;CL:0000062,4.02e-07,11;CL:0000375,4.02e-07,11;CL:0000335,4.02e-07,11;CL:0000499,4.73e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000335;4.03e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.76e-08;5!DOID:450;9.76e-08;5!DOID:66;9.76e-08;5!DOID:423;9.76e-08;5!DOID:0080000;9.76e-08;5!DOID:11722;9.76e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.44e-08,5;DOID:450,9.44e-08,5;DOID:66,9.44e-08,5;DOID:423,9.44e-08,5;DOID:0080000,9.44e-08,5;DOID:11722,9.44e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.73e-13!45;UBERON:0002416!2.73e-13!45;UBERON:0002097!4.64e-12!40;UBERON:0000475!9.46e-08!365;UBERON:0002616!1.20e-07!59;UBERON:0002067!2.11e-07!9;UBERON:0004016!2.11e-07!9;UBERON:0010083!2.11e-07!9;UBERON:0004290!3.45e-07!70;UBERON:0007023!4.17e-07!115;UBERON:0001049!9.45e-07!57;UBERON:0005068!9.45e-07!57;UBERON:0006241!9.45e-07!57;UBERON:0007135!9.45e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.19e-16;16!UBERON:0002036;1.19e-16;16!UBERON:0002097;3.06e-14;41!UBERON:0002199;6.84e-12;46!UBERON:0002416;6.84e-12;46!UBERON:0003102;6.80e-11;50!UBERON:0002067;3.15e-10;9!UBERON:0001013;2.89e-08;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.44e-19,46;UBERON:0002416,3.44e-19,46;UBERON:0002097,2.58e-18,41;UBERON:0002067,2.76e-10,9;UBERON:0004016,2.76e-10,9;UBERON:0010083,2.76e-10,9;UBERON:0003102,1.33e-09,99;UBERON:0001013,2.43e-08,14;UBERON:0002384,3.57e-07,371;UBERON:0002329,8.63e-07,71;UBERON:0003059,8.63e-07,71;UBERON:0007282,8.63e-07,71;UBERON:0004290,8.63e-07,71;UBERON:0009618,8.63e-07,71 | |||
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| |||
|short_description=p@chr1:119530930..119530971,- | |||
}} |
Revision as of 23:49, 11 September 2013
Short description: | p@chr1:119530930..119530971, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:119530930..119530971, - |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.04e-21 | 23 |
fibroblast | 6.42e-12 | 76 |
cell of skeletal muscle | 1.99e-11 | 9 |
GAG secreting cell | 7.10e-11 | 9 |
carbohydrate secreting cell | 7.10e-11 | 9 |
extracellular matrix secreting cell | 1.20e-10 | 15 |
fat cell | 8.37e-09 | 15 |
mesenchymal stem cell of adipose | 2.52e-08 | 8 |
chondroblast | 3.92e-08 | 6 |
chondrocyte | 3.92e-08 | 6 |
fibroblast of dermis | 1.50e-07 | 6 |
osteoblast | 4.02e-07 | 11 |
osteoprogenitor cell | 4.02e-07 | 11 |
mesenchyme condensation cell | 4.02e-07 | 11 |
stromal cell | 4.73e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
integument | 3.44e-19 | 46 |
integumental system | 3.44e-19 | 46 |
skin of body | 2.58e-18 | 41 |
dermis | 2.76e-10 | 9 |
dermatome | 2.76e-10 | 9 |
future dermis | 2.76e-10 | 9 |
surface structure | 1.33e-09 | 99 |
adipose tissue | 2.43e-08 | 14 |
connective tissue | 3.57e-07 | 371 |
somite | 8.63e-07 | 71 |
presomitic mesoderm | 8.63e-07 | 71 |
presumptive segmental plate | 8.63e-07 | 71 |
dermomyotome | 8.63e-07 | 71 |
trunk paraxial mesoderm | 8.63e-07 | 71 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.44e-08 | 5 |
myotonic disease | 9.44e-08 | 5 |
muscle tissue disease | 9.44e-08 | 5 |
myopathy | 9.44e-08 | 5 |
muscular disease | 9.44e-08 | 5 |
myotonic dystrophy | 9.44e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.