FFCP PHASE1:Hg19::chr1:151483881..151483912,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57530|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17429|TSSclassifier=S|UniProt=Q9P2M7|association_with_transcript=8bp_to_ENST00000271636_5end|coexpression_cluster_id=C3864|description=CAGE_peak_1_at_CGN_5end|id=chr1:151483881..151483912,+|ontology_enrichment_celltype=CL:0000066!2.42e-19!254;CL:0000223!1.16e-10!59;CL:0002076!1.72e-09!43|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,3.08e-14,253;CL:0000223,1.58e-07,58|ontology_enrichment_development_v019=UBERON:0001041;1.49e-09;30!UBERON:0006595;3.88e-07;86|ontology_enrichment_disease=DOID:305!2.57e-21!106;DOID:0050687!1.35e-18!143;DOID:162!1.31e-10!235;DOID:14566!5.09e-10!239;DOID:299!3.74e-09!25|ontology_enrichment_disease_v019=DOID:299;4.76e-11;25!DOID:305;3.84e-08;106!DOID:3119;2.11e-07;14!DOID:0050615;4.91e-07;16|ontology_enrichment_disease_v019_2=DOID:305,2.19e-22,106;DOID:0050687,1.42e-17,143;DOID:299,5.42e-11,25;DOID:3119,1.99e-07,14;DOID:162,3.32e-07,235;DOID:0050615,3.65e-07,16|ontology_enrichment_uberon=UBERON:0004119!3.05e-17!169;UBERON:0000925!3.05e-17!169;UBERON:0006595!3.05e-17!169;UBERON:0004921!8.31e-15!129;UBERON:0004185!8.31e-15!129;UBERON:0001007!1.17e-14!155;UBERON:0001555!1.17e-14!155;UBERON:0007026!1.17e-14!155;UBERON:0007023!4.66e-14!115;UBERON:0000077!1.84e-13!130;UBERON:0005177!2.81e-13!107;UBERON:0000064!5.54e-13!219;UBERON:0000466!1.98e-12!126;UBERON:0005911!5.21e-12!82;UBERON:0000464!1.07e-10!104;UBERON:0000062!1.20e-10!511;UBERON:0001041!3.86e-10!98;UBERON:0001049!4.33e-10!57;UBERON:0005068!4.33e-10!57;UBERON:0006241!4.33e-10!57;UBERON:0007135!4.33e-10!57;UBERON:0004121!1.00e-09!169;UBERON:0000481!2.47e-09!347;UBERON:0003075!3.49e-09!86;UBERON:0007284!3.49e-09!86;UBERON:0000924!4.03e-09!173;UBERON:0006601!4.03e-09!173;UBERON:0005743!1.39e-08!86;UBERON:0009569!1.70e-08!113;UBERON:0000073!2.28e-08!94;UBERON:0001016!2.28e-08!94;UBERON:0002346!2.62e-08!90;UBERON:0000153!3.42e-08!129;UBERON:0007811!3.42e-08!129;UBERON:0000033!5.98e-08!123;UBERON:0005172!8.11e-08!55;UBERON:0005173!8.11e-08!55;UBERON:0001017!8.58e-08!82;UBERON:0002616!1.41e-07!59;UBERON:0003056!1.60e-07!61;UBERON:0002048!1.92e-07!22;UBERON:0000117!1.92e-07!22;UBERON:0000171!1.92e-07!22;UBERON:0000170!1.92e-07!22;UBERON:0005597!1.92e-07!22;UBERON:0000118!1.92e-07!22;UBERON:0004111!2.34e-07!241;UBERON:0003080!2.39e-07!42;UBERON:0001008!2.85e-07!45;UBERON:0002780!3.20e-07!41;UBERON:0001890!3.20e-07!41;UBERON:0006240!3.20e-07!41;UBERON:0005153!3.29e-07!37;UBERON:0006554!3.64e-07!44;UBERON:0000955!3.75e-07!69;UBERON:0006238!3.75e-07!69;UBERON:0000922!5.43e-07!612;UBERON:0005178!6.34e-07!34;UBERON:0002224!6.34e-07!34;UBERON:0001004!7.78e-07!72;UBERON:0000063!8.13e-07!97;UBERON:0000489!8.26e-07!32|ontology_enrichment_uberon_v019=UBERON:0004921;2.51e-11;33!UBERON:0005409;1.81e-10;22!UBERON:0000160;6.38e-09;17!UBERON:0002048;1.49e-08;22!UBERON:0000117;1.49e-08;22!UBERON:0000171;1.49e-08;22!UBERON:0000170;1.49e-08;22|ontology_enrichment_uberon_v019_2=UBERON:0004921,5.35e-16,118;UBERON:0004119,4.23e-15,160;UBERON:0000925,4.23e-15,160;UBERON:0006595,4.23e-15,160;UBERON:0001007,6.16e-14,145;UBERON:0001555,6.16e-14,145;UBERON:0007026,6.16e-14,145;UBERON:0005177,5.36e-13,101;UBERON:0011216,5.32e-12,223;UBERON:0005911,7.25e-12,82;UBERON:0007023,1.86e-09,114;UBERON:0009569,3.94e-09,112;UBERON:0006554,4.69e-09,47;UBERON:0000160,6.87e-09,17;UBERON:0001041,7.73e-09,87;UBERON:0002048,8.96e-09,22;UBERON:0000117,8.96e-09,22;UBERON:0000171,8.96e-09,22;UBERON:0000170,8.96e-09,22;UBERON:0005597,8.96e-09,22;UBERON:0000118,8.96e-09,22;UBERON:0001008,1.08e-08,48;UBERON:0005409,1.43e-08,25;UBERON:0005153,1.78e-08,37;UBERON:0005172,1.89e-07,54;UBERON:0005173,1.89e-07,54;UBERON:0002113,6.27e-07,26;UBERON:0003918,6.27e-07,26;UBERON:0011143,6.27e-07,26;UBERON:0005095,6.27e-07,26;UBERON:0007687,6.27e-07,26;UBERON:0005178,6.54e-07,34;UBERON:0002224,6.54e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0,5.40614660303319,14.653824527421,1.09220686065086,1.05506791291381,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0.286235987131057,1.50561867580173,0.251085279189606,0.0764134057479513,0,0,0,0,0,1.83884244895785,0.90361775633475,0.739508020333575,0.0774672005803016,1.13735385989937,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0.589211814949674,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0.253019692019503,0,0.651083453856419,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0.895037932904712,0,0,0,0,0,2.07976597760949,1.99556457716308,1.84453049955565,4.78073625566651,0.364295288292542,0.741568885568859,0,0.174129737299267,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0,0,0,0.872188104285069,0,0.12663051166458,0,0.2868366207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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57530 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17429 | |||
|TSSclassifier=S | |||
|UniProt=Q9P2M7 | |||
|association_with_transcript=8bp_to_ENST00000271636_5end | |||
|coexpression_cluster_id=C3864 | |||
|description=CAGE_peak_1_at_CGN_5end | |||
|id=chr1:151483881..151483912,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.42e-19!254;CL:0000223!1.16e-10!59;CL:0002076!1.72e-09!43 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.08e-14,253;CL:0000223,1.58e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.49e-09;30!UBERON:0006595;3.88e-07;86 | |||
|ontology_enrichment_disease=DOID:305!2.57e-21!106;DOID:0050687!1.35e-18!143;DOID:162!1.31e-10!235;DOID:14566!5.09e-10!239;DOID:299!3.74e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:299;4.76e-11;25!DOID:305;3.84e-08;106!DOID:3119;2.11e-07;14!DOID:0050615;4.91e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.19e-22,106;DOID:0050687,1.42e-17,143;DOID:299,5.42e-11,25;DOID:3119,1.99e-07,14;DOID:162,3.32e-07,235;DOID:0050615,3.65e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.05e-17!169;UBERON:0000925!3.05e-17!169;UBERON:0006595!3.05e-17!169;UBERON:0004921!8.31e-15!129;UBERON:0004185!8.31e-15!129;UBERON:0001007!1.17e-14!155;UBERON:0001555!1.17e-14!155;UBERON:0007026!1.17e-14!155;UBERON:0007023!4.66e-14!115;UBERON:0000077!1.84e-13!130;UBERON:0005177!2.81e-13!107;UBERON:0000064!5.54e-13!219;UBERON:0000466!1.98e-12!126;UBERON:0005911!5.21e-12!82;UBERON:0000464!1.07e-10!104;UBERON:0000062!1.20e-10!511;UBERON:0001041!3.86e-10!98;UBERON:0001049!4.33e-10!57;UBERON:0005068!4.33e-10!57;UBERON:0006241!4.33e-10!57;UBERON:0007135!4.33e-10!57;UBERON:0004121!1.00e-09!169;UBERON:0000481!2.47e-09!347;UBERON:0003075!3.49e-09!86;UBERON:0007284!3.49e-09!86;UBERON:0000924!4.03e-09!173;UBERON:0006601!4.03e-09!173;UBERON:0005743!1.39e-08!86;UBERON:0009569!1.70e-08!113;UBERON:0000073!2.28e-08!94;UBERON:0001016!2.28e-08!94;UBERON:0002346!2.62e-08!90;UBERON:0000153!3.42e-08!129;UBERON:0007811!3.42e-08!129;UBERON:0000033!5.98e-08!123;UBERON:0005172!8.11e-08!55;UBERON:0005173!8.11e-08!55;UBERON:0001017!8.58e-08!82;UBERON:0002616!1.41e-07!59;UBERON:0003056!1.60e-07!61;UBERON:0002048!1.92e-07!22;UBERON:0000117!1.92e-07!22;UBERON:0000171!1.92e-07!22;UBERON:0000170!1.92e-07!22;UBERON:0005597!1.92e-07!22;UBERON:0000118!1.92e-07!22;UBERON:0004111!2.34e-07!241;UBERON:0003080!2.39e-07!42;UBERON:0001008!2.85e-07!45;UBERON:0002780!3.20e-07!41;UBERON:0001890!3.20e-07!41;UBERON:0006240!3.20e-07!41;UBERON:0005153!3.29e-07!37;UBERON:0006554!3.64e-07!44;UBERON:0000955!3.75e-07!69;UBERON:0006238!3.75e-07!69;UBERON:0000922!5.43e-07!612;UBERON:0005178!6.34e-07!34;UBERON:0002224!6.34e-07!34;UBERON:0001004!7.78e-07!72;UBERON:0000063!8.13e-07!97;UBERON:0000489!8.26e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.51e-11;33!UBERON:0005409;1.81e-10;22!UBERON:0000160;6.38e-09;17!UBERON:0002048;1.49e-08;22!UBERON:0000117;1.49e-08;22!UBERON:0000171;1.49e-08;22!UBERON:0000170;1.49e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,5.35e-16,118;UBERON:0004119,4.23e-15,160;UBERON:0000925,4.23e-15,160;UBERON:0006595,4.23e-15,160;UBERON:0001007,6.16e-14,145;UBERON:0001555,6.16e-14,145;UBERON:0007026,6.16e-14,145;UBERON:0005177,5.36e-13,101;UBERON:0011216,5.32e-12,223;UBERON:0005911,7.25e-12,82;UBERON:0007023,1.86e-09,114;UBERON:0009569,3.94e-09,112;UBERON:0006554,4.69e-09,47;UBERON:0000160,6.87e-09,17;UBERON:0001041,7.73e-09,87;UBERON:0002048,8.96e-09,22;UBERON:0000117,8.96e-09,22;UBERON:0000171,8.96e-09,22;UBERON:0000170,8.96e-09,22;UBERON:0005597,8.96e-09,22;UBERON:0000118,8.96e-09,22;UBERON:0001008,1.08e-08,48;UBERON:0005409,1.43e-08,25;UBERON:0005153,1.78e-08,37;UBERON:0005172,1.89e-07,54;UBERON:0005173,1.89e-07,54;UBERON:0002113,6.27e-07,26;UBERON:0003918,6.27e-07,26;UBERON:0011143,6.27e-07,26;UBERON:0005095,6.27e-07,26;UBERON:0007687,6.27e-07,26;UBERON:0005178,6.54e-07,34;UBERON:0002224,6.54e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,5.40614660303319,14.653824527421,1.09220686065086,1.05506791291381,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0.286235987131057,1.50561867580173,0.251085279189606,0.0764134057479513,0,0,0,0,0,1.83884244895785,0.90361775633475,0.739508020333575,0.0774672005803016,1.13735385989937,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0.589211814949674,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0.253019692019503,0,0.651083453856419,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0.895037932904712,0,0,0,0,0,2.07976597760949,1.99556457716308,1.84453049955565,4.78073625566651,0.364295288292542,0.741568885568859,0,0.174129737299267,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0,0,0,0.872188104285069,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.818238361772504,0.860413786167011,2.92736894711029,4.63854189125198,3.83440011469411,2.69518743039963,3.78481276313443,5.10968302706162,0,0,0,0,0,0.118306800039844,0.337169380156203,0.482022059766964,0,0,0,0.134831308160164,0,0,0,0,0.4115740113314,0,20.2808055714929,8.84544495009863,4.13552934676983,0.441463099414651,23.2448148846485,0.171567810298526,0.439001141634502,2.24803506515239,0.502644862058154,0.370353780634118,0.325808305310325,0,0,6.37617227362923,0.117408694235822,0,0,0,3.95102198979638,2.57545848628462,0,0,0,0,0,0.283550194484773,0.0895585227028483,0.581267877027924,1.15014803749563,0,0.176096868026452,0,0.288239906833923,0.37872730027914,0.063497894292169,1.14596527667483,0,3.4214489204541,0.205654985406647,0,0.285826432630578,0,0,0.1466765716419,0,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,0,0,0.99972991182057,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0.76228387266739,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.213455115606889,0.303127571446259,4.99306318531491,2.41912234663744,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,16.4368851444606,1.40354529212299,1.47329582297434,0,0,0,9.47519187105565,4.46688955205606,0.784349769176855,4.38417673959782,3.16654886678627,0,0,0.215915916102139,0,0.812839312631559,1.00337954770971,7.90116446439619,8.31076008928724,0.895499018888713,0,0,1.79515087581472,0.984043937099117,0.976135183992909,5.77029665227245,1.19040304263846,1.56768049849117,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0.495854746082934,0.960950336825531,1.27612712494584,1.11273558941105,0,0,0,0,0,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.769776901804097,0.670302275535787,1.08890984861323,6.11934705049064,0.86101074534246,1.68471475667626,1.7737206141467,0.689170200620878,0,0,0,0.238231775457789,0.411362273086194,0,0,0,2.67060177818683,2.88743956579008,1.22520107990516,0.185803175125719,1.58696134274089,2.77453189058815,2.07254154547469,0.199579371432817,0.191505370132367,0.423347165447766,0,0,0,0.156679895773023,0,0,0,0,0,0.343505344755765,0,0.223676107892416,0,0.976940477010201,0,2.46174797895425,0.270455678475983,0,0,9.73130810122743,0,0.606802608747567,2.563197838382,1.13654458722565,1.43246690842614,2.96964680832639,1.84296421259539,0.994147647766298,1.26602474769461,0.667852230137435,0.659215496907038,1.05562704063997,1.9924798825107,4.69682656402951,10.5811754098796,0.613612095012929,0.369254416383208,0,9.61591357276397,11.9944187032658,0,0.690503839458535,0,0,4.84666373047609,0.556608588971108,0,6.51069402713083,0.874599999961957,0.724999575434793,1.93448862085349,6.61059490761192,5.67330436243047,1.72371686620732,2.04123229368278,0.347249989866585,0.885741385813839,0.844175070377856,1.52581736317083,7.6299689352545,2.06883333267483,0.219385397153973,0.21787692703798,0.697118721393016,1.23120413606075,0,15.447781594,8.61673386333812,19.0132900863514,1.27600463892768,1.28236630762607,1.5991043280559,1.02193298195737,0,0,0,0,0,0,0,1.47698645169619,5.06021705293358,13.2871887147904,2.16388639742091,6.96683351754953,6.72277490225378,14.0536933334734,0.296521128680622,0.617819694732514,0.626531697032732,2.08943512240099,0,0.937057782901357,0.364909578431332,1.56531695145672,0,9.47002566838537,7.25944296291983,0.30607276163049,0.252746318513952,0.450970258243478,1.14057010536972,0,0.330991955875499,0.313932918407225,0,3.9845336444171,0.693373365065693,13.7112193284753,1.27390116638691,3.04707223031409,1.92199335066233,0,0.0967563312890851,0.0730893170861856,0,2.61870344518732,0.441280633457501,0.90392296312213,0,0.397429223405979,0.569797163602908,10.5597746676794,4.80952921509202,6.19013684744122,0.19980960958213,11.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| |||
|short_description=p1@CGN | |||
}} |
Revision as of 00:21, 12 September 2013
Short description: | p1@CGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CGN_5end |
Coexpression cluster: | C3864_small_Intestinal_serous_choriocarcinoma_Hepatocyte_rectal_Prostate |
Association with transcript: | 8bp_to_ENST00000271636_5end |
EntrezGene: | CGN |
HGNC: | 17429 |
UniProt: | Q9P2M7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.08e-14 | 253 |
endodermal cell | 1.58e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 5.35e-16 | 118 |
endoderm-derived structure | 4.23e-15 | 160 |
endoderm | 4.23e-15 | 160 |
presumptive endoderm | 4.23e-15 | 160 |
digestive system | 6.16e-14 | 145 |
digestive tract | 6.16e-14 | 145 |
primitive gut | 6.16e-14 | 145 |
trunk region element | 5.36e-13 | 101 |
organ system subdivision | 5.32e-12 | 223 |
endo-epithelium | 7.25e-12 | 82 |
adult organism | 1.86e-09 | 114 |
subdivision of trunk | 3.94e-09 | 112 |
urinary system structure | 4.69e-09 | 47 |
intestine | 6.87e-09 | 17 |
foregut | 7.73e-09 | 87 |
lung | 8.96e-09 | 22 |
respiratory tube | 8.96e-09 | 22 |
respiration organ | 8.96e-09 | 22 |
pair of lungs | 8.96e-09 | 22 |
lung primordium | 8.96e-09 | 22 |
lung bud | 8.96e-09 | 22 |
renal system | 1.08e-08 | 48 |
gastrointestinal system | 1.43e-08 | 25 |
epithelial bud | 1.78e-08 | 37 |
abdomen element | 1.89e-07 | 54 |
abdominal segment element | 1.89e-07 | 54 |
kidney | 6.27e-07 | 26 |
kidney mesenchyme | 6.27e-07 | 26 |
upper urinary tract | 6.27e-07 | 26 |
kidney rudiment | 6.27e-07 | 26 |
kidney field | 6.27e-07 | 26 |
thoracic cavity element | 6.54e-07 | 34 |
thoracic cavity | 6.54e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.19e-22 | 106 |
cell type cancer | 1.42e-17 | 143 |
adenocarcinoma | 5.42e-11 | 25 |
gastrointestinal system cancer | 1.99e-07 | 14 |
cancer | 3.32e-07 | 235 |
respiratory system cancer | 3.65e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.