FFCP PHASE1:Hg19::chr1:179561011..179561029,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=163589|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20614|TSSclassifier=S|UniProt=Q8NAT2|association_with_transcript=0bp_to_ENST00000294848,ENST00000444136,uc001gnf.1,uc010pnp.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_3_at_TDRD5_5end|id=chr1:179561011..179561029,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0009117;6.99e-21;10!UBERON:0005564;6.99e-21;10|ontology_enrichment_disease=DOID:5093!3.80e-09!4;DOID:1612!3.80e-09!4|ontology_enrichment_disease_v019=DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7|ontology_enrichment_disease_v019_2=DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7|ontology_enrichment_uberon=UBERON:0001049!4.29e-30!57;UBERON:0005068!4.29e-30!57;UBERON:0006241!4.29e-30!57;UBERON:0007135!4.29e-30!57;UBERON:0002780!1.03e-26!41;UBERON:0001890!1.03e-26!41;UBERON:0006240!1.03e-26!41;UBERON:0002616!2.65e-26!59;UBERON:0003080!5.54e-26!42;UBERON:0007023!6.96e-25!115;UBERON:0002020!1.45e-22!34;UBERON:0003528!1.45e-22!34;UBERON:0000955!2.46e-21!69;UBERON:0006238!2.46e-21!69;UBERON:0001869!4.49e-21!32;UBERON:0002346!1.71e-20!90;UBERON:0003075!7.28e-20!86;UBERON:0007284!7.28e-20!86;UBERON:0001893!1.14e-19!34;UBERON:0005743!1.44e-19!86;UBERON:0001017!6.43e-19!82;UBERON:0003056!1.33e-18!61;UBERON:0002791!1.08e-17!33;UBERON:0000073!3.50e-17!94;UBERON:0001016!3.50e-17!94;UBERON:0000369!1.19e-15!4;UBERON:0002435!1.19e-15!4;UBERON:0000204!1.19e-15!4;UBERON:0010082!1.19e-15!4;UBERON:0000200!2.12e-14!6;UBERON:0002308!2.24e-14!9;UBERON:0000125!2.24e-14!9;UBERON:0000153!1.38e-13!129;UBERON:0007811!1.38e-13!129;UBERON:0002619!1.54e-13!22;UBERON:0000033!3.06e-13!123;UBERON:0005383!3.11e-12!3;UBERON:0005382!3.11e-12!3;UBERON:0001950!4.86e-12!20;UBERON:0000956!9.36e-12!25;UBERON:0000203!9.36e-12!25;UBERON:0000988!1.60e-11!3;UBERON:0000025!1.93e-11!194;UBERON:0002771!2.22e-11!3;UBERON:0001871!3.87e-11!7;UBERON:0002420!1.81e-10!9;UBERON:0007245!1.81e-10!9;UBERON:0010009!1.81e-10!9;UBERON:0010011!1.81e-10!9;UBERON:0000454!1.81e-10!9;UBERON:0000924!2.92e-10!173;UBERON:0006601!2.92e-10!173;UBERON:0004121!1.04e-09!169;UBERON:0003296!1.20e-09!4;UBERON:0010133!1.20e-09!4;UBERON:0001905!5.09e-09!2;UBERON:0001873!5.09e-09!2;UBERON:0002757!5.09e-09!2;UBERON:0010134!5.09e-09!2;UBERON:0002784!5.09e-09!2;UBERON:0005408!5.09e-09!2;UBERON:0001899!5.09e-09!2;UBERON:0010122!5.09e-09!2;UBERON:0001894!5.13e-09!7;UBERON:0006222!5.13e-09!7;UBERON:0009663!5.82e-09!7;UBERON:0004111!1.39e-08!241;UBERON:0002148!5.84e-08!2;UBERON:0009662!5.84e-08!2;UBERON:0000475!1.89e-07!365;UBERON:0000349!2.20e-07!5;UBERON:0002298!2.41e-07!8;UBERON:0000483!7.27e-07!309|ontology_enrichment_uberon_v019=UBERON:0000473;8.65e-26;8!UBERON:0003135;4.28e-19;11!UBERON:0000991;1.53e-10;21!UBERON:0003101;4.14e-10;22!UBERON:0000079;4.14e-10;22|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.65e-26,8;UBERON:0003135,4.28e-19,11;UBERON:0000991,1.53e-10,21;UBERON:0009196,1.53e-10,21;UBERON:0009117,1.53e-10,21;UBERON:0005564,1.53e-10,21;UBERON:0004176,4.14e-10,22;UBERON:0003101,4.14e-10,22;UBERON:0000079,4.14e-10,22|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0.0874599999961957,0,0,0,1.18193840883968,0,0,0,0.885741385813839,0.482385754501632,0,0,0,0,0,0,0,0,0,0,0.977826347298073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.391102765469606,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=163589 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20614 | |||
|TSSclassifier=S | |||
|UniProt=Q8NAT2 | |||
|association_with_transcript=0bp_to_ENST00000294848,ENST00000444136,uc001gnf.1,uc010pnp.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_TDRD5_5end | |||
|id=chr1:179561011..179561029,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.99e-21;10!UBERON:0005564;6.99e-21;10 | |||
|ontology_enrichment_disease=DOID:5093!3.80e-09!4;DOID:1612!3.80e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.29e-30!57;UBERON:0005068!4.29e-30!57;UBERON:0006241!4.29e-30!57;UBERON:0007135!4.29e-30!57;UBERON:0002780!1.03e-26!41;UBERON:0001890!1.03e-26!41;UBERON:0006240!1.03e-26!41;UBERON:0002616!2.65e-26!59;UBERON:0003080!5.54e-26!42;UBERON:0007023!6.96e-25!115;UBERON:0002020!1.45e-22!34;UBERON:0003528!1.45e-22!34;UBERON:0000955!2.46e-21!69;UBERON:0006238!2.46e-21!69;UBERON:0001869!4.49e-21!32;UBERON:0002346!1.71e-20!90;UBERON:0003075!7.28e-20!86;UBERON:0007284!7.28e-20!86;UBERON:0001893!1.14e-19!34;UBERON:0005743!1.44e-19!86;UBERON:0001017!6.43e-19!82;UBERON:0003056!1.33e-18!61;UBERON:0002791!1.08e-17!33;UBERON:0000073!3.50e-17!94;UBERON:0001016!3.50e-17!94;UBERON:0000369!1.19e-15!4;UBERON:0002435!1.19e-15!4;UBERON:0000204!1.19e-15!4;UBERON:0010082!1.19e-15!4;UBERON:0000200!2.12e-14!6;UBERON:0002308!2.24e-14!9;UBERON:0000125!2.24e-14!9;UBERON:0000153!1.38e-13!129;UBERON:0007811!1.38e-13!129;UBERON:0002619!1.54e-13!22;UBERON:0000033!3.06e-13!123;UBERON:0005383!3.11e-12!3;UBERON:0005382!3.11e-12!3;UBERON:0001950!4.86e-12!20;UBERON:0000956!9.36e-12!25;UBERON:0000203!9.36e-12!25;UBERON:0000988!1.60e-11!3;UBERON:0000025!1.93e-11!194;UBERON:0002771!2.22e-11!3;UBERON:0001871!3.87e-11!7;UBERON:0002420!1.81e-10!9;UBERON:0007245!1.81e-10!9;UBERON:0010009!1.81e-10!9;UBERON:0010011!1.81e-10!9;UBERON:0000454!1.81e-10!9;UBERON:0000924!2.92e-10!173;UBERON:0006601!2.92e-10!173;UBERON:0004121!1.04e-09!169;UBERON:0003296!1.20e-09!4;UBERON:0010133!1.20e-09!4;UBERON:0001905!5.09e-09!2;UBERON:0001873!5.09e-09!2;UBERON:0002757!5.09e-09!2;UBERON:0010134!5.09e-09!2;UBERON:0002784!5.09e-09!2;UBERON:0005408!5.09e-09!2;UBERON:0001899!5.09e-09!2;UBERON:0010122!5.09e-09!2;UBERON:0001894!5.13e-09!7;UBERON:0006222!5.13e-09!7;UBERON:0009663!5.82e-09!7;UBERON:0004111!1.39e-08!241;UBERON:0002148!5.84e-08!2;UBERON:0009662!5.84e-08!2;UBERON:0000475!1.89e-07!365;UBERON:0000349!2.20e-07!5;UBERON:0002298!2.41e-07!8;UBERON:0000483!7.27e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.65e-26;8!UBERON:0003135;4.28e-19;11!UBERON:0000991;1.53e-10;21!UBERON:0003101;4.14e-10;22!UBERON:0000079;4.14e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.65e-26,8;UBERON:0003135,4.28e-19,11;UBERON:0000991,1.53e-10,21;UBERON:0009196,1.53e-10,21;UBERON:0009117,1.53e-10,21;UBERON:0005564,1.53e-10,21;UBERON:0004176,4.14e-10,22;UBERON:0003101,4.14e-10,22;UBERON:0000079,4.14e-10,22 | |||
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|short_description=p3@TDRD5 | |||
}} |
Revision as of 02:02, 12 September 2013
Short description: | p3@TDRD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TDRD5_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000294848, ENST00000444136, uc001gnf.1, uc010pnp.1_5end |
EntrezGene: | TDRD5 |
HGNC: | 20614 |
UniProt: | Q8NAT2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 8.65e-26 | 8 |
male reproductive organ | 4.28e-19 | 11 |
gonad | 1.53e-10 | 21 |
indifferent external genitalia | 1.53e-10 | 21 |
indifferent gonad | 1.53e-10 | 21 |
gonad primordium | 1.53e-10 | 21 |
external genitalia | 4.14e-10 | 22 |
male organism | 4.14e-10 | 22 |
male reproductive system | 4.14e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.