FFCP PHASE1:Hg19::chr1:33430424..33430450,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=127544|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26886|TSSclassifier=W|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25|association_with_transcript=-138bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end|coexpression_cluster_id=C1347|description=CAGE_peak_3_at_RNF19B_5end|id=chr1:33430424..33430450,-|ontology_enrichment_celltype=CL:0002057!8.49e-22!42;CL:0000860!3.94e-18!45;CL:0000766!2.62e-13!76;CL:0000738!1.45e-10!140;CL:0002009!2.30e-10!65;CL:0002194!6.88e-10!63;CL:0000576!6.88e-10!63;CL:0000040!6.88e-10!63;CL:0000559!6.88e-10!63;CL:0000557!1.26e-09!71;CL:0000839!2.79e-08!70;CL:0000763!9.37e-08!112;CL:0000049!9.37e-08!112;CL:0000094!7.44e-07!8;CL:0002087!8.23e-07!119|ontology_enrichment_celltype_v019=CL:0000860;2.79e-17;33!CL:0002057;2.79e-17;33!CL:0000576;6.88e-12;48!CL:0000473;9.44e-12;39!CL:0000234;9.44e-12;39!CL:0000766;3.52e-09;69!CL:0000094;3.56e-07;8|ontology_enrichment_celltype_v019_2=CL:0000860,4.53e-22,42;CL:0002057,4.53e-22,42;CL:0000473,4.64e-18,48;CL:0000234,4.64e-18,48;CL:0000766,7.54e-17,72;CL:0002009,1.62e-13,61;CL:0002194,5.27e-13,59;CL:0000576,5.27e-13,59;CL:0000040,5.27e-13,59;CL:0000559,5.27e-13,59;CL:0000738,5.54e-13,136;CL:0000557,1.32e-12,67;CL:0000839,3.63e-11,66;CL:0000763,8.47e-10,108;CL:0000049,8.47e-10,108;CL:0002087,1.16e-08,115;CL:0000037,3.15e-08,168;CL:0002031,7.12e-08,120;CL:0000988,1.35e-07,177;CL:0002032,2.26e-07,161;CL:0000837,2.26e-07,161;CL:0000094,6.31e-07,8|ontology_enrichment_development_v019=CL:0002057;1.16e-16;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!3.26e-11!216;UBERON:0002390!9.29e-10!102;UBERON:0003061!9.29e-10!102;UBERON:0002193!2.63e-09!112;UBERON:0002371!2.07e-08!80;UBERON:0001474!2.30e-07!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.99e-12,98;UBERON:0003061,4.99e-12,98;UBERON:0003081,2.00e-11,203;UBERON:0002193,2.78e-11,108;UBERON:0002371,6.80e-11,76;UBERON:0001474,1.75e-09,82;UBERON:0004765,1.61e-08,90;UBERON:0002405,8.63e-08,93;UBERON:0001434,1.06e-07,100|phase1_expression=1.63510541343501,0.856402095563933,0.845726424575827,0,1.78784437770915,0,0,0,1.56711376919903,2.21160542851358,4.18680700783456,2.40285509343189,3.4289707169699,1.23766352960047,1.98838425436749,0.672325146451775,1.20538905604795,4.38186054232424,2.43966399395253,2.70866327768933,2.44800829493104,2.82109249330279,1.43117993565528,0.958120975510189,1.25542639594803,1.29902789771517,2.54511827294832,2.36132343941038,13.7677496897116,6.90892916574983,11.9208414953379,2.75826367343678,7.228942050678,4.06729411183466,1.23947520928483,1.42169232487422,2.05520307534393,18.281848481552,22.8620670115962,17.1438587865523,2.68698569087909,2.26725566213286,0.515151135268373,7.26991193897824,5.29026321164333,9.21819432513701,7.43772918098191,6.16751832032739,6.81354015969228,5.75384784644301,5.12321413058201,5.43909128743746,6.89491361473237,3.22742341791913,8.12558919566051,5.45902784673554,4.09359225086769,3.82029923556644,3.97909060082173,2.24650318953266,5.11469700639233,8.57613380485462,5.78444607102732,7.2458207590558,3.77272010217159,7.94339314567596,6.85104473895132,7.28621129244555,6.25779502104242,4.12658804939722,4.23779651843358,4.05105399586321,6.0127853613768,3.38008458099107,3.82687739937078,3.77385561915077,7.30136102452218,4.95583746376971,4.50031642751824,4.27519115611873,3.9783335439818,2.73996230646951,0,0.546138611262131,0.889509253863555,1.28019066769952,1.60158394814405,0.574752439954483,0.661044872784862,0,3.41527781465669,6.45960908308033,0.764546456250458,9.25199300053181,6.72610275577843,1.84368859342554,3.34406609193516,5.50215067848831,5.96244347098577,1.5046784585161,3.2592226663359,1.4203434172042,1.94826728407911,2.56244050835899,2.3568472597987,2.65840673500345,1.89562704635511,4.48319619039863,3.64166173167659,2.30213066445147,2.21080014228679,2.02862160014537,1.63115219478266,1.33770414044857,2.09071047609954,2.94604291013672,1.53288197440768,3.4362744548263,2.02415753615602,1.91139248594458,3.25541726928209,1.90090408889675,1.20460095262218,1.53583933385302,1.24930726552346,2.60454977248419,4.10563998460523,6.04820229674197,7.75576567772171,4.63438092424957,7.31420598941885,0.670700859703636,0.895037932904712,1.0843174571537,2.00535164254356,0.869079113764942,1.5905718941022,5.83961844363163,0.945348171640679,1.77383517970051,1.22968699970376,11.3296900305521,5.10013403609559,2.22470665670658,0,1.74129737299267,1.19662164466979,7.15471872916026,3.43196946468077,4.45749001595478,2.18638648103376,1.72046919021225,2.77712401286075,2.26123176769604,2.51699661725944,2.47606237746061,1.46296476575767,3.87625138753993,2.13459757612026,1.33888245105868,0.805658634218294,3.04108842287405,2.4406205754817,4.04429388380456,4.0507097394088,2.05389375053383,3.14341121676638,1.91439516821648,3.066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68540344,2.82387096184928,0.781514011233092,1.30953347240711,1.14640342257068,1.77427303460454,3.24180406168294,3.12431239445539,1.65349437200947,2.72687983833799,4.37579847214576,1.09651553371436,1.48863353516788,1.05522746615772,0.638812138197976,2.14280734351315,2.01770233331294,0,0.91064876540519,0.975726071789027,1.03710588800201,0.857440047187092,3.26254718288792,3.68327531951955,0.945550727071746,1.22354542081276,1.33438257845874,2.04250266890802,0.560544326627578,1.82631744101899,1.07963795609311,0.9555033757741,2.07281978112303,1.89616334079272,1.51113852978563,1.04314963381548,0.801711364730253,2.90102629828252,2.0486217251274,4.14755797088455,1.72090943528111,2.83996801753357,4.17545683319873,0.423387050190929,1.60374807980835,1.86123831398592,0.955538938977433,0.559277158988962,0.98150233615243,0.609589624911347,0,1.23195368227496,2.3196288626764,0.485710993059139,1.87151570769685,0.994753875806841,2.2594817247738,0.5647304101948,2.52863188514487,2.11347980993343,1.00326405540328,1.5299169235277,2.35158648180761,1.71603825227734,0.942706188406504,2.1593931382644,0.594092800654172,1.6906229103336,1.69927114687817,1.2217909337381,1.09578409555081,1.29923502702408,0.535661815816973,0.705789743431384,0.802413666891683,0.730336388246517,0.917458566809082,0.430018749454354,1.41994405973866,3.33158301935482,2.18175345170189,0.5290268405154,1.85997509083376,2.31087814315709,2.59575937274273,0.756998549010474,2.73163929909239,2.15387451719443,3.46762021122738,2.13773924212448,4.77853477581194,2.75778293221613,29.2505775122404,46.8937227773312,3.31667775783512,1.13776295448085,0.639701945702943,1.42838658878244,0.775066918032073,0.620747142958579,0.672791175483681,0.827413057616144,0.808468755832877,2.8303177226605,0.342233301085281,1.34704106029175,2.07994395638761,0.665320713092027,1.62806537221949,2.98836568457603,0,0.988077223172456,7.03922827210363,2.07810455110873,2.44137706989443,0,1.40891655513718,1.28227396921293|short_description=p3@RNF19B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=127544 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26886 | |||
|TSSclassifier=W | |||
|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | |||
|association_with_transcript=-138bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | |||
|coexpression_cluster_id=C1347 | |||
|description=CAGE_peak_3_at_RNF19B_5end | |||
|id=chr1:33430424..33430450,- | |||
|ontology_enrichment_celltype=CL:0002057!8.49e-22!42;CL:0000860!3.94e-18!45;CL:0000766!2.62e-13!76;CL:0000738!1.45e-10!140;CL:0002009!2.30e-10!65;CL:0002194!6.88e-10!63;CL:0000576!6.88e-10!63;CL:0000040!6.88e-10!63;CL:0000559!6.88e-10!63;CL:0000557!1.26e-09!71;CL:0000839!2.79e-08!70;CL:0000763!9.37e-08!112;CL:0000049!9.37e-08!112;CL:0000094!7.44e-07!8;CL:0002087!8.23e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.79e-17;33!CL:0002057;2.79e-17;33!CL:0000576;6.88e-12;48!CL:0000473;9.44e-12;39!CL:0000234;9.44e-12;39!CL:0000766;3.52e-09;69!CL:0000094;3.56e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.53e-22,42;CL:0002057,4.53e-22,42;CL:0000473,4.64e-18,48;CL:0000234,4.64e-18,48;CL:0000766,7.54e-17,72;CL:0002009,1.62e-13,61;CL:0002194,5.27e-13,59;CL:0000576,5.27e-13,59;CL:0000040,5.27e-13,59;CL:0000559,5.27e-13,59;CL:0000738,5.54e-13,136;CL:0000557,1.32e-12,67;CL:0000839,3.63e-11,66;CL:0000763,8.47e-10,108;CL:0000049,8.47e-10,108;CL:0002087,1.16e-08,115;CL:0000037,3.15e-08,168;CL:0002031,7.12e-08,120;CL:0000988,1.35e-07,177;CL:0002032,2.26e-07,161;CL:0000837,2.26e-07,161;CL:0000094,6.31e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.16e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.26e-11!216;UBERON:0002390!9.29e-10!102;UBERON:0003061!9.29e-10!102;UBERON:0002193!2.63e-09!112;UBERON:0002371!2.07e-08!80;UBERON:0001474!2.30e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.99e-12,98;UBERON:0003061,4.99e-12,98;UBERON:0003081,2.00e-11,203;UBERON:0002193,2.78e-11,108;UBERON:0002371,6.80e-11,76;UBERON:0001474,1.75e-09,82;UBERON:0004765,1.61e-08,90;UBERON:0002405,8.63e-08,93;UBERON:0001434,1.06e-07,100 | |||
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| |||
|short_description=p3@RNF19B | |||
}} |
Revision as of 05:22, 12 September 2013
Short description: | p3@RNF19B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RNF19B_5end |
Coexpression cluster: | C1347_testis_Neutrophils_Eosinophils_CD14_Basophils_blood_Whole |
Association with transcript: | -138bp_to_ENST00000235150, ENST00000356990, ENST00000373456, ENST00000405457, NM_001127361, NM_153341, uc001bwm.3, uc010oho.1, uc010ohp.1_5end |
EntrezGene: | RNF19B |
HGNC: | 26886 |
UniProt: | G3XA82E9PAW6Q6ZMZ0F5GY25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.53e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.53e-22 | 42 |
defensive cell | 4.64e-18 | 48 |
phagocyte | 4.64e-18 | 48 |
myeloid leukocyte | 7.54e-17 | 72 |
macrophage dendritic cell progenitor | 1.62e-13 | 61 |
monopoietic cell | 5.27e-13 | 59 |
monocyte | 5.27e-13 | 59 |
monoblast | 5.27e-13 | 59 |
promonocyte | 5.27e-13 | 59 |
leukocyte | 5.54e-13 | 136 |
granulocyte monocyte progenitor cell | 1.32e-12 | 67 |
myeloid lineage restricted progenitor cell | 3.63e-11 | 66 |
myeloid cell | 8.47e-10 | 108 |
common myeloid progenitor | 8.47e-10 | 108 |
nongranular leukocyte | 1.16e-08 | 115 |
hematopoietic stem cell | 3.15e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 7.12e-08 | 120 |
hematopoietic cell | 1.35e-07 | 177 |
hematopoietic oligopotent progenitor cell | 2.26e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.26e-07 | 161 |
granulocyte | 6.31e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.99e-12 | 98 |
blood island | 4.99e-12 | 98 |
lateral plate mesoderm | 2.00e-11 | 203 |
hemolymphoid system | 2.78e-11 | 108 |
bone marrow | 6.80e-11 | 76 |
bone element | 1.75e-09 | 82 |
skeletal element | 1.61e-08 | 90 |
immune system | 8.63e-08 | 93 |
skeletal system | 1.06e-07 | 100 |
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