FFCP PHASE1:Hg19::chr1:98552570..98552605,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:98552570..98552605,+|id=chr1:98552570..98552605,+|ontology_enrichment_celltype=CL:0000222!1.53e-15!119;CL:0000220!3.54e-11!246;CL:0002321!6.14e-11!248;CL:0000055!3.61e-10!180;CL:0000680!8.86e-09!57;CL:0000056!8.86e-09!57;CL:0000355!8.86e-09!57;CL:0000192!6.95e-08!42;CL:0000514!6.95e-08!42;CL:0000548!7.76e-08!679;CL:0000004!7.76e-08!679;CL:0000255!7.76e-08!679;CL:0000012!1.20e-07!682;CL:0000187!4.50e-07!54;CL:0000213!7.04e-07!57;CL:0000215!7.04e-07!57|ontology_enrichment_celltype_v019=CL:0002618;1.94e-19;3!CL:0002593;2.88e-13;2!CL:0002543;5.46e-10;6!CL:0002139;6.98e-09;24!CL:0000115;2.63e-08;36!CL:0000319;6.57e-08;1!CL:0000222;1.79e-07;1!CL:1000306;2.43e-07;4!CL:0002547;2.43e-07;4|ontology_enrichment_celltype_v019_2=CL:0002618,1.66e-19,3;CL:0002593,5.38e-13,2;CL:0002078,3.82e-12,45;CL:0002543,5.06e-10,6;CL:0000115,6.21e-10,36;CL:0000222,7.58e-10,121;CL:0002139,7.35e-09,24;CL:0000319,6.37e-08,1;CL:1000306,2.40e-07,4;CL:0002547,2.40e-07,4;CL:0000213,2.78e-07,58;CL:0000215,2.78e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3030;6.57e-08;1!DOID:5662;9.12e-08;1|ontology_enrichment_disease_v019_2=DOID:3030,6.37e-08,1;DOID:5662,8.84e-08,1|ontology_enrichment_uberon=UBERON:0002049!8.41e-14!79;UBERON:0007798!8.41e-14!79;UBERON:0004535!1.02e-11!110;UBERON:0001009!4.29e-11!113;UBERON:0000055!1.54e-10!69;UBERON:0001981!4.51e-10!60;UBERON:0007500!4.51e-10!60;UBERON:0004537!4.51e-10!60;UBERON:0006965!4.51e-10!60;UBERON:0000490!6.77e-10!138;UBERON:0004872!1.06e-09!84;UBERON:0003914!2.05e-09!118;UBERON:0002066!3.28e-08!5;UBERON:0001637!3.60e-08!42;UBERON:0003509!3.60e-08!42;UBERON:0004572!3.60e-08!42;UBERON:0001134!8.96e-08!61;UBERON:0002036!8.96e-08!61;UBERON:0003082!8.96e-08!61;UBERON:0002385!2.52e-07!63;UBERON:0001015!2.52e-07!63;UBERON:0000383!2.52e-07!63;UBERON:0000119!3.46e-07!312;UBERON:0000483!4.44e-07!309;UBERON:0007625!4.78e-07!11|ontology_enrichment_uberon_v019=UBERON:0002456;2.88e-13;2!UBERON:0002066;6.90e-12;5!UBERON:0003513;1.88e-08;7!UBERON:0004573;3.40e-08;33!UBERON:0004571;3.40e-08;33!UBERON:0000055;1.60e-07;65!UBERON:0004797;2.43e-07;4!UBERON:0000415;2.43e-07;4!UBERON:0007240;2.43e-07;4!UBERON:0005742;2.43e-07;4!UBERON:0005734;2.43e-07;4!UBERON:0004664;2.43e-07;4!UBERON:0004663;2.43e-07;4!UBERON:0000947;2.46e-07;21!UBERON:0010191;2.46e-07;21!UBERON:0007500;4.58e-07;56!UBERON:0001981;4.58e-07;56!UBERON:0004537;4.58e-07;56!UBERON:0001638;8.29e-07;9!UBERON:0010260;8.29e-07;9!UBERON:0003920;8.29e-07;9!UBERON:0004582;8.29e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.22e-15,78;UBERON:0007798,8.22e-15,78;UBERON:0002456,5.38e-13,2;UBERON:0000055,7.19e-13,68;UBERON:0002066,6.30e-12,5;UBERON:0004535,3.03e-11,109;UBERON:0001009,7.39e-11,112;UBERON:0007500,8.89e-11,59;UBERON:0001981,8.89e-11,59;UBERON:0004537,8.89e-11,59;UBERON:0006965,8.89e-11,59;UBERON:0003914,2.30e-10,117;UBERON:0004872,1.65e-08,83;UBERON:0004573,1.89e-08,33;UBERON:0004571,1.89e-08,33;UBERON:0003513,2.43e-08,7;UBERON:0000947,2.19e-07,21;UBERON:0010191,2.19e-07,21;UBERON:0000415,2.40e-07,4;UBERON:0007240,2.40e-07,4;UBERON:0005742,2.40e-07,4;UBERON:0005734,2.40e-07,4;UBERON:0004664,2.40e-07,4;UBERON:0004663,2.40e-07,4;UBERON:0001638,7.89e-07,9;UBERON:0010260,7.89e-07,9;UBERON:0003920,7.89e-07,9;UBERON:0004582,7.89e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0.487932798790507,0.369363174230364,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13441780596881,0.443458794925128,0.790513071238134,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,4.52246353539208,0,0.275118041940067,0.835979866147242,1.55050055501597,0.35576626268671,1.00416183829401,0,0,0,0,0,5.09008451219255,1.79623498100936,1.12611480483322,0,0,0.366403487860815,0,0,0,0,0.759783069987479,12.0492354540029,1.43418310374407,0,1.12135520028461,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717558542755448,0,0.211931901159562,0,0.206105058476878,0.257640540045629,0,0.843881661206331,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0.710019185033229,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,0.115930404975077,0.469634776943287,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0.602878754119172,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.205476322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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:98552570..98552605,+ | |||
|id=chr1:98552570..98552605,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.53e-15!119;CL:0000220!3.54e-11!246;CL:0002321!6.14e-11!248;CL:0000055!3.61e-10!180;CL:0000680!8.86e-09!57;CL:0000056!8.86e-09!57;CL:0000355!8.86e-09!57;CL:0000192!6.95e-08!42;CL:0000514!6.95e-08!42;CL:0000548!7.76e-08!679;CL:0000004!7.76e-08!679;CL:0000255!7.76e-08!679;CL:0000012!1.20e-07!682;CL:0000187!4.50e-07!54;CL:0000213!7.04e-07!57;CL:0000215!7.04e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002618;1.94e-19;3!CL:0002593;2.88e-13;2!CL:0002543;5.46e-10;6!CL:0002139;6.98e-09;24!CL:0000115;2.63e-08;36!CL:0000319;6.57e-08;1!CL:0000222;1.79e-07;1!CL:1000306;2.43e-07;4!CL:0002547;2.43e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,1.66e-19,3;CL:0002593,5.38e-13,2;CL:0002078,3.82e-12,45;CL:0002543,5.06e-10,6;CL:0000115,6.21e-10,36;CL:0000222,7.58e-10,121;CL:0002139,7.35e-09,24;CL:0000319,6.37e-08,1;CL:1000306,2.40e-07,4;CL:0002547,2.40e-07,4;CL:0000213,2.78e-07,58;CL:0000215,2.78e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;6.57e-08;1!DOID:5662;9.12e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,6.37e-08,1;DOID:5662,8.84e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002049!8.41e-14!79;UBERON:0007798!8.41e-14!79;UBERON:0004535!1.02e-11!110;UBERON:0001009!4.29e-11!113;UBERON:0000055!1.54e-10!69;UBERON:0001981!4.51e-10!60;UBERON:0007500!4.51e-10!60;UBERON:0004537!4.51e-10!60;UBERON:0006965!4.51e-10!60;UBERON:0000490!6.77e-10!138;UBERON:0004872!1.06e-09!84;UBERON:0003914!2.05e-09!118;UBERON:0002066!3.28e-08!5;UBERON:0001637!3.60e-08!42;UBERON:0003509!3.60e-08!42;UBERON:0004572!3.60e-08!42;UBERON:0001134!8.96e-08!61;UBERON:0002036!8.96e-08!61;UBERON:0003082!8.96e-08!61;UBERON:0002385!2.52e-07!63;UBERON:0001015!2.52e-07!63;UBERON:0000383!2.52e-07!63;UBERON:0000119!3.46e-07!312;UBERON:0000483!4.44e-07!309;UBERON:0007625!4.78e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002456;2.88e-13;2!UBERON:0002066;6.90e-12;5!UBERON:0003513;1.88e-08;7!UBERON:0004573;3.40e-08;33!UBERON:0004571;3.40e-08;33!UBERON:0000055;1.60e-07;65!UBERON:0004797;2.43e-07;4!UBERON:0000415;2.43e-07;4!UBERON:0007240;2.43e-07;4!UBERON:0005742;2.43e-07;4!UBERON:0005734;2.43e-07;4!UBERON:0004664;2.43e-07;4!UBERON:0004663;2.43e-07;4!UBERON:0000947;2.46e-07;21!UBERON:0010191;2.46e-07;21!UBERON:0007500;4.58e-07;56!UBERON:0001981;4.58e-07;56!UBERON:0004537;4.58e-07;56!UBERON:0001638;8.29e-07;9!UBERON:0010260;8.29e-07;9!UBERON:0003920;8.29e-07;9!UBERON:0004582;8.29e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.22e-15,78;UBERON:0007798,8.22e-15,78;UBERON:0002456,5.38e-13,2;UBERON:0000055,7.19e-13,68;UBERON:0002066,6.30e-12,5;UBERON:0004535,3.03e-11,109;UBERON:0001009,7.39e-11,112;UBERON:0007500,8.89e-11,59;UBERON:0001981,8.89e-11,59;UBERON:0004537,8.89e-11,59;UBERON:0006965,8.89e-11,59;UBERON:0003914,2.30e-10,117;UBERON:0004872,1.65e-08,83;UBERON:0004573,1.89e-08,33;UBERON:0004571,1.89e-08,33;UBERON:0003513,2.43e-08,7;UBERON:0000947,2.19e-07,21;UBERON:0010191,2.19e-07,21;UBERON:0000415,2.40e-07,4;UBERON:0007240,2.40e-07,4;UBERON:0005742,2.40e-07,4;UBERON:0005734,2.40e-07,4;UBERON:0004664,2.40e-07,4;UBERON:0004663,2.40e-07,4;UBERON:0001638,7.89e-07,9;UBERON:0010260,7.89e-07,9;UBERON:0003920,7.89e-07,9;UBERON:0004582,7.89e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0.487932798790507,0.369363174230364,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13441780596881,0.443458794925128,0.790513071238134,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,4.52246353539208,0,0.275118041940067,0.835979866147242,1.55050055501597,0.35576626268671,1.00416183829401,0,0,0,0,0,5.09008451219255,1.79623498100936,1.12611480483322,0,0,0.366403487860815,0,0,0,0,0.759783069987479,12.0492354540029,1.43418310374407,0,1.12135520028461,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717558542755448,0,0.211931901159562,0,0.206105058476878,0.257640540045629,0,0.843881661206331,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0.710019185033229,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,0.115930404975077,0.469634776943287,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0.602878754119172,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0.601892199455438,0,0,0.664225598535437,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0,3.63478100428535,0,0,0,0,0.459257792658427,0.364182336013434,0,0,0,0,1.46139224653261,0,0,0.170093705276516,1.72732732881711,0,0,0,0,0,1.79099803777743,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0.107420244868274,0,0.170453254832202,0,0,0,0,0,0,1.88887408098384,0,0,0,0,0,0.858749320451947,0,1.58189712359363,0,0,0,0.318203247925937,0,0.719489830333259,0.823611089208164,0.117812402345686,0,0,0,0,1.21856744815642,1.05650146756755,0,0.565621727814851,0,0,0,0.438450885253763,0.578775534266688,0,0.405820753925408,0.6196469961995,0,0.717056761020258,0.294747123039363,0.35667105148125,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0,0,0,0,0,0,0,11.2421792073135,0,0,0,0,0,0.511343412510774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683652335082007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2378877426256,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,5.82672910881823,0,0,0,0,0,0,0.664653872707185,0.992975867626496,5.02292669451561,0,0,6.65638430463066,0,0,0.0870592065804026,0,0.343972064943233,0,0,0,0.193978032976839,0,0,0,0,0,0,0.561111741760736,0,0,0,0.114536596165916,0,0.14405479798815,0.124252535565433,0,0.135904206073614,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0.211200673038813,0,0,0,0,0,0.542999601753713,0,0,0,0,1.02232813071253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0,0.310874401165561,0.147855149989634,0.159296767163702,0,0.931577741257556,0.414706207840855,0.53168342911599,0,0.300515217994437,0.380805212168795,0,0.181848659202559,0.751873899297419,0.464033759878494,0,0.400027764663154,0,0,1.26184898228651,2.88929745610955,0,0,0,0.926089897295336,0,0,0,0,0.353378291891762,0.192914038270915,0,0,0,0.607719912354764,0,0,0,0,0.982829546539238,5.16123108382811,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91529616043611,0,0,0,1.66847102838104,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0.591660003652827,0.340853619036631,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481448200135009,0,0,0,0,0,0,0,0.371995018166751,0,0,0.378499274505237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,19.9580136791328,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:98552570..98552605,+ | |||
}} |
Revision as of 07:24, 12 September 2013
Short description: | p@chr1:98552570..98552605, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:98552570..98552605, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 1.66e-19 | 3 |
smooth muscle cell of the internal thoracic artery | 5.38e-13 | 2 |
meso-epithelial cell | 3.82e-12 | 45 |
vein endothelial cell | 5.06e-10 | 6 |
endothelial cell | 6.21e-10 | 36 |
mesodermal cell | 7.58e-10 | 121 |
endothelial cell of vascular tree | 7.35e-09 | 24 |
mucus secreting cell | 6.37e-08 | 1 |
fibroblast of tunica adventitia of artery | 2.40e-07 | 4 |
fibroblast of the aortic adventitia | 2.40e-07 | 4 |
lining cell | 2.78e-07 | 58 |
barrier cell | 2.78e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
vasculature | 8.22e-15 | 78 |
vascular system | 8.22e-15 | 78 |
internal thoracic artery | 5.38e-13 | 2 |
vessel | 7.19e-13 | 68 |
umbilical vein | 6.30e-12 | 5 |
cardiovascular system | 3.03e-11 | 109 |
circulatory system | 7.39e-11 | 112 |
epithelial tube open at both ends | 8.89e-11 | 59 |
blood vessel | 8.89e-11 | 59 |
blood vasculature | 8.89e-11 | 59 |
vascular cord | 8.89e-11 | 59 |
epithelial tube | 2.30e-10 | 117 |
splanchnic layer of lateral plate mesoderm | 1.65e-08 | 83 |
systemic artery | 1.89e-08 | 33 |
systemic arterial system | 1.89e-08 | 33 |
trunk blood vessel | 2.43e-08 | 7 |
aorta | 2.19e-07 | 21 |
aortic system | 2.19e-07 | 21 |
artery wall | 2.40e-07 | 4 |
tunica adventitia of artery | 2.40e-07 | 4 |
adventitia | 2.40e-07 | 4 |
tunica adventitia of blood vessel | 2.40e-07 | 4 |
aorta tunica adventitia | 2.40e-07 | 4 |
aorta wall | 2.40e-07 | 4 |
vein | 7.89e-07 | 9 |
umbilical blood vessel | 7.89e-07 | 9 |
venous blood vessel | 7.89e-07 | 9 |
venous system | 7.89e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 6.37e-08 | 1 |
pleomorphic carcinoma | 8.84e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.