FFCP PHASE1:Hg19::chr22:33197683..33197698,+: Difference between revisions
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{{FFCP | 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721255063381,0,37.6748810457938,3.17605384544123,0,274.60648198069,162.390166325207,100.194368622864,0.315543124386369,124.424427049374,26.617392110763,116.385904913388,767.797717496175,353.102180274404,1338.11395664888,21.7006250716336,0,0,9.58694999574628,3.47382626845229,0,1.75495277504663,637.905081601139,166.405724826987,130.179601995028,80.6777367722783,400.879885973844,207.354119804918,12.4656595983492,89.4496633003312,148.911113507055,387.802135388859,440.615471928918,306.327464291025,230.323011630394,105.136554755771,322.893368677829,493.335308757738,99.3119877053889,1.3874554964103,96.53614114347,3.14388207373054,403.582420933941,708.266927595528,398.351358571108,425.418578704543,555.314396517641,0|short_description=p1@TIMP3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7078 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11822 | |||
|TSSclassifier=S | |||
|UniProt=P35625,F5H8D8 | |||
|association_with_transcript=0bp_to_ENST00000266085,ENST00000538671_5end | |||
|coexpression_cluster_id=C1492 | |||
|description=CAGE_peak_1_at_TIMP3_5end | |||
|id=chr22:33197683..33197698,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.32e-18!180;CL:0000057!3.15e-12!75;CL:0000183!7.33e-08!59;CL:0000192!1.03e-07!42;CL:0000514!1.03e-07!42;CL:0000187!1.16e-07!54;CL:0002334!1.26e-07!12;CL:0000136!1.85e-07!15;CL:0000359!2.12e-07!32;CL:0000680!4.56e-07!57;CL:0000056!4.56e-07!57;CL:0000355!4.56e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.11e-07;12!CL:0000359;3.35e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.07e-13,76;CL:0000192,2.97e-08,43;CL:0000514,2.97e-08,43;CL:0000187,3.66e-08,55;CL:0002334,1.11e-07,12;CL:0000680,1.54e-07,58;CL:0000056,1.54e-07,58;CL:0000355,1.54e-07,58;CL:0000136,1.64e-07,15;CL:0000359,1.89e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.34e-16!365;UBERON:0000468!1.32e-12!659;UBERON:0004923!3.59e-11!57;UBERON:0000467!5.50e-11!625;UBERON:0000480!1.04e-10!626;UBERON:0000481!2.89e-09!347;UBERON:0007023!4.87e-09!115;UBERON:0003102!7.05e-09!95;UBERON:0000062!2.04e-08!511;UBERON:0004290!3.84e-08!70;UBERON:0000477!3.86e-08!286;UBERON:0000119!3.94e-08!312;UBERON:0000914!4.94e-08!83;UBERON:0002329!4.94e-08!83;UBERON:0003077!4.94e-08!83;UBERON:0003059!4.94e-08!83;UBERON:0007282!4.94e-08!83;UBERON:0009618!4.94e-08!83;UBERON:0007285!4.94e-08!83;UBERON:0002385!5.64e-08!63;UBERON:0001015!5.64e-08!63;UBERON:0000383!5.64e-08!63;UBERON:0004872!7.45e-08!84;UBERON:0000064!8.16e-08!219;UBERON:0001134!1.11e-07!61;UBERON:0002036!1.11e-07!61;UBERON:0003082!1.11e-07!61;UBERON:0000486!1.21e-07!82;UBERON:0004111!1.42e-07!241;UBERON:0000483!1.52e-07!309;UBERON:0005631!1.57e-07!14;UBERON:0000158!1.57e-07!14;UBERON:0002199!2.61e-07!45;UBERON:0002416!2.61e-07!45;UBERON:0005256!4.22e-07!143;UBERON:0002100!7.30e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,1.35e-11,66;UBERON:0007023,2.91e-09,114;UBERON:0007524,5.37e-09,73;UBERON:0003102,7.74e-09,99;UBERON:0002329,1.27e-08,71;UBERON:0003059,1.27e-08,71;UBERON:0007282,1.27e-08,71;UBERON:0004290,1.27e-08,71;UBERON:0009618,1.27e-08,71;UBERON:0007503,1.28e-08,78;UBERON:0003077,1.31e-08,72;UBERON:0007285,1.31e-08,72;UBERON:0002385,1.83e-08,64;UBERON:0001015,1.83e-08,64;UBERON:0000383,1.83e-08,64;UBERON:0005256,2.19e-08,122;UBERON:0001134,3.65e-08,62;UBERON:0002036,3.65e-08,62;UBERON:0003082,3.65e-08,62;UBERON:0000119,4.22e-08,309;UBERON:0000486,5.30e-08,83;UBERON:0004872,1.15e-07,83;UBERON:0005631,1.39e-07,14;UBERON:0000158,1.39e-07,14;UBERON:0000483,1.63e-07,306;UBERON:0004111,2.50e-07,240;UBERON:0002199,2.69e-07,46;UBERON:0002416,2.69e-07,46;UBERON:0010314,4.56e-07,132;UBERON:0003104,9.72e-07,160;UBERON:0009142,9.72e-07,160 | |||
|phase1_expression=591.726481284203,428.415148305857,802.876285730652,968.709528058302,678.93390243505,956.083022414004,352.086830653952,491.478061526074,84.6241435367477,215.754396248325,83.7361401566913,910.026756294298,522.522383870567,20.7927472972878,30.4885585669683,92.1085450638932,92.2122627876685,94.9403117503585,125.39872928916,27.9484801834309,59.5682018433219,147.950628537657,43.5078700439206,47.0848022250722,84.6157390868971,0,0,0,0.393364276848904,0.383829398097213,59.2945752300571,79.0702253051877,47.5905351669635,43.6309731996809,0,0,5.5784083473621,0.553995408531877,0,0.217010870715852,0.671746422719773,0,0,0.145398238779565,0,0.485168122375632,0.232429036905685,0.411167888021826,0.619412741790207,0,0.512321413058201,0.236482229888585,0.344745680736619,1.29096936716765,0,0.376484679085209,0.272906150057846,0.674170453335254,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0,0,0,1.24564449799115,0,0,0,36.3239701580021,0.368277635987565,0.632924774881769,0.211255286311942,0,0,0,0.150176892841506,0,0,0,0,0,1.09227722252426,0,0,0,0,0,0.954053754535364,0,0,0,15.8605594294831,6.72610275577843,9.48182705190277,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,238.930728987682,30.1815386866636,484.343384263293,318.789332403187,77.206038237927,233.92712812173,843.798389821216,1560.63802906055,46.1329907760651,61.6407724945928,57.4439498433044,429.807836245744,64.48026602778,24.4717732237723,67.8304052738288,63.0349649023347,80.5725240744323,0,0,0,0.39752481473341,14.6239881168041,0,0,0,0,0,98.198368484345,165.43131214932,438.484002721718,106.346939716815,58.5409521403255,261.634525691638,2.57364156242108,1.62028389576352,30.6298068014394,22.9019960078693,16.441276150565,1.53316637465883,1.89853131913626,3.66403487860815,0,0,147.835883676319,1790.58994195823,415.981230818145,617.424010132039,1139.31505761429,322.748227800505,188.948351247958,174.000863039419,309.321105715119,154.983095629084,16.2999913204323,15.2019569895517,84.9115169088065,44.3655461849599,1049.76001461541,241.924059543498,55.3357666898116,108.948088122263,21.490513251809,19.4247533241758,16.5731951908653,123.104965266701,126.028009561874,352.030936465833,279.180671461283,452.745747509038,348.591801622264,143.005010221431,60.0959926816016,56.9289265417437,42.6678737845642,147.935458236842,186.038092050005,308.288496876337,55.5817697484103,906.276439500131,364.756020102113,932.712297003232,2274.0903261276,546.59061508068,984.702144054395,947.520915584124,2441.85597486664,579.262995683326,788.855544512858,465.58838733275,1207.49604443652,880.423789441204,391.724157909065,353.533834967367,65.128907516031,64.9135767006186,35.5637698282365,7.19644866164613,1.98794652482228,9.52790331530051,19.1772951778435,9.33587148239825,3.6497735907583,1672.44550060573,575.700639682632,1205.91786340715,151.383944538425,87.3474172820198,56.7872640191251,53.6099314448363,56.8786030525018,53.1616948570139,52.7268254703623,57.6567604439965,51.5055597171828,55.7268960955983,59.6358093266905,367.601416403075,642.307324019782,114.829149161461,166.119843865662,21.5483559197112,6.87979051674338,96.2987547890689,0,87.3217913656106,44.2644950570196,156.284406421883,17.9842805212191,26.0370038546124,27.4061797669248,1431.92750183888,136.231456871625,33.1962086658129,18.5488647960123,166.602937120631,174.250302447616,201.398697970826,199.576605694094,18.1747011530633,6.00940313466411,4.92434012174795,119.108170955872,30.4693882691893,57.177638731934,69.7125832025267,95.5564155413685,250.047395386352,110.731530573819,267.217727378152,514.833083601261,237.202481231631,546.309584449934,653.439868792503,485.907126258136,66.1648058524401,560.377020293993,127.767017458951,420.838217215855,549.818603484671,1039.18698013995,106.041606505945,1503.11718564956,173.948067464479,751.644091378917,1282.76323546443,786.844180874141,327.977467991728,76.3242394598578,79.0456520526382,125.002783891401,42.5547396069835,95.1127179087475,173.432306307333,48.8359444852299,31.2831327976692,277.201492833968,133.98276467594,17.4229412045354,47.9288609524742,154.261422172252,451.677974160534,24.3247561282381,5.52482800575339,88.5502545828733,24.2021104046498,40.2016775419399,211.102619460263,33.8788257602135,33.6981168982629,27.7544493021838,0,0,0,0,43.1960861178188,55.9601371587773,34.0247077622186,16.7516265334349,31.258998831005,0,0,0,40.9789582341927,15.0051156317903,74.5978815174273,334.417145341538,244.804572629706,291.276360567677,201.834658032445,1255.54712806404,1307.59314832191,489.427627213548,367.980981588632,497.612385894057,398.708906794032,818.644639351718,492.410813168578,0.206768026122887,0,0.106727557803444,637.174155180037,752.288186587447,782.888469430542,1124.4245850347,1427.81019947213,733.084166659188,767.169086593882,2565.18843957138,1074.5041932393,1622.20946624375,1357.97056362618,1924.59154066898,664.983582243813,293.89800691793,746.651681605238,110.948974725109,112.28362336984,78.72924554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| |||
|short_description=p1@TIMP3 | |||
}} |
Revision as of 11:37, 12 September 2013
Short description: | p1@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TIMP3_5end |
Coexpression cluster: | C1492_chorionic_amniotic_Smooth_basal_spindle_placenta_mesenchymal |
Association with transcript: | 0bp_to_ENST00000266085, ENST00000538671_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | P35625F5H8D8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.07e-13 | 76 |
smooth muscle cell | 2.97e-08 | 43 |
smooth muscle myoblast | 2.97e-08 | 43 |
muscle cell | 3.66e-08 | 55 |
preadipocyte | 1.11e-07 | 12 |
muscle precursor cell | 1.54e-07 | 58 |
myoblast | 1.54e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.54e-07 | 58 |
fat cell | 1.64e-07 | 15 |
vascular associated smooth muscle cell | 1.89e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 1.35e-11 | 66 |
adult organism | 2.91e-09 | 114 |
dense mesenchyme tissue | 5.37e-09 | 73 |
surface structure | 7.74e-09 | 99 |
somite | 1.27e-08 | 71 |
presomitic mesoderm | 1.27e-08 | 71 |
presumptive segmental plate | 1.27e-08 | 71 |
dermomyotome | 1.27e-08 | 71 |
trunk paraxial mesoderm | 1.27e-08 | 71 |
epithelial vesicle | 1.28e-08 | 78 |
paraxial mesoderm | 1.31e-08 | 72 |
presumptive paraxial mesoderm | 1.31e-08 | 72 |
muscle tissue | 1.83e-08 | 64 |
musculature | 1.83e-08 | 64 |
musculature of body | 1.83e-08 | 64 |
trunk mesenchyme | 2.19e-08 | 122 |
skeletal muscle tissue | 3.65e-08 | 62 |
striated muscle tissue | 3.65e-08 | 62 |
myotome | 3.65e-08 | 62 |
cell layer | 4.22e-08 | 309 |
multilaminar epithelium | 5.30e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 1.15e-07 | 83 |
extraembryonic membrane | 1.39e-07 | 14 |
membranous layer | 1.39e-07 | 14 |
epithelium | 1.63e-07 | 306 |
anatomical conduit | 2.50e-07 | 240 |
integument | 2.69e-07 | 46 |
integumental system | 2.69e-07 | 46 |
structure with developmental contribution from neural crest | 4.56e-07 | 132 |
mesenchyme | 9.72e-07 | 160 |
entire embryonic mesenchyme | 9.72e-07 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.