FFCP PHASE1:Hg19::chr2:228336905..228336916,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3267|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5175|TSSclassifier=S|UniProt=B3KUL1,E9PHX7,P52594|association_with_transcript=17bp_to_NM_001135187,NM_001135188,NM_001135189,NM_004504,uc002vpc.2,uc002vpd.2,uc002vpe.2,uc002vpf.2_5end|description=CAGE_peak_3_at_AGFG1_5end|id=chr2:228336905..228336916,+|ontology_enrichment_celltype=CL:0000860!4.67e-12!45;CL:0002057!2.66e-11!42;CL:0002009!2.95e-08!65;CL:0000557!7.03e-08!71;CL:0002194!1.01e-07!63;CL:0000576!1.01e-07!63;CL:0000040!1.01e-07!63;CL:0000559!1.01e-07!63;CL:0000839!3.32e-07!70|ontology_enrichment_celltype_v019=CL:0000860;3.60e-18;33!CL:0002057;3.60e-18;33!CL:0000473;1.26e-11;39!CL:0000234;1.26e-11;39!CL:0000576;1.22e-09;48|ontology_enrichment_celltype_v019_2=CL:0000860,1.01e-18,42;CL:0002057,1.01e-18,42;CL:0000473,3.31e-15,48;CL:0000234,3.31e-15,48;CL:0002009,9.04e-11,61;CL:0002194,2.08e-10,59;CL:0000576,2.08e-10,59;CL:0000040,2.08e-10,59;CL:0000559,2.08e-10,59;CL:0000557,6.60e-10,67;CL:0000766,2.73e-09,72;CL:0000839,2.77e-09,66|ontology_enrichment_development_v019=CL:0002057;1.89e-13;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000062!2.17e-08!511;UBERON:0002371!4.48e-08!80;UBERON:0000480!5.11e-08!626;UBERON:0000923!5.55e-08!604;UBERON:0005291!5.55e-08!604;UBERON:0006598!5.55e-08!604;UBERON:0002532!5.55e-08!604;UBERON:0000922!6.02e-08!612;UBERON:0000467!6.54e-08!625;UBERON:0002050!8.77e-08!605;UBERON:0005423!8.77e-08!605;UBERON:0001474!1.43e-07!86;UBERON:0000468!5.43e-07!659|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.52e-10,82;UBERON:0002371,4.98e-10,76;UBERON:0004765,5.49e-10,90;UBERON:0001434,1.13e-08,100;UBERON:0003081,5.61e-08,203;UBERON:0002390,7.14e-08,98;UBERON:0003061,7.14e-08,98;UBERON:0002405,2.79e-07,93;UBERON:0002193,6.39e-07,108;UBERON:0002204,7.31e-07,167|phase1_expression=1.09007027562334,0.642301571672949,0.563817616383885,0,0.446961094427288,0,0,0.631719873426831,0.783556884599516,0.737201809504527,0.697801167972428,0.436882744260345,0,0.247532705920093,0,0,1.20538905604795,0,0,0.123121058076788,0,0.313454721478088,0,0.136874425072884,0.251085279189606,0.61130724598361,0.492603536699674,0.865818594450472,0,0.383829398097213,1.23852898652861,0.919421224478927,0,0,2.24654881682875,0.142169232487422,0.293600439334847,1.66198622559563,1.60435557976113,1.30206522429511,0.223915474239924,0.32389366601898,0.515151135268373,0.872389432677388,1.51150377475524,0.970336244751265,2.32429036905685,2.05583944010913,1.85823822537062,5.75384784644301,4.09857130446561,3.31075121844019,3.44745680736619,0,1.35426486594342,0.941211697713023,1.09162460023138,0.898893937780338,2.44867113896722,2.24650318953266,3.19668562899521,3.95821560224059,1.99463657621632,2.55734850319616,3.48251086354301,1.13477044938228,0.622822248995575,1.50749199154046,2.08593167368081,1.95469960234605,1.81619850790011,2.20966581592539,2.84816148696796,0.211255286311942,0.212604299965044,0,0.44931452458598,1.20141514273205,0.64290234678832,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0.569212969109448,0,0,0,0.560508562981536,0,0.393419540227666,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0.130059347559878,0,0.276350017785848,0,0.14828656316206,0,0,0.339928028092699,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0,0,0,5.36560687762909,1.40648818027883,1.0843174571537,1.00267582127178,1.01392563272577,0.795285947051099,0.486634870302636,0.472674085820339,0.665188192387692,0.43917392846563,0.654895377488563,0,0,0.324547393654683,0.870648686496336,0.664789802594326,0.476981248610684,0,0.74291500265913,0.596287222100115,0,1.04142150482278,0.56530794192401,0,1.10047216776027,1.04497483268405,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,1.10298924103761,0,0.267899184852239,0.44905874525234,0.225222960966644,1.53316637465883,0,0,1.31780417436063,0,0.436094052142534,0.496971951695318,0.759783069987479,1.05927344650575,0.286836620748814,1.06400514659507,0.560677600142307,3.20246987189115,0,1.8672662123986,1.34710672069688,0.817309515567294,0.151357427644931,1.72852777344,0,0.312160076830321,1.1409436430889,0.149448680551801,0,0.485618833104395,0,0,0.122834317311768,0.206651562351531,0,1.23633464639278,0,0,0,0.125118519871964,0.277064115484183,0,0,0.45071417671979,0.907457465280168,0,0,0.635795703478686,0.600182192168805,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0.757301322732344,0.184099797284599,0.646584227275248,0,0.201504196455281,0.169560592310488,0.773043412653187,0.818238361772504,2.00763216772303,0.365921118388786,0.265059536642971,0.464775771478074,0.414644220061482,0.252320850875628,0.72995471815166,0,0,1.38134921352481,1.39310378409594,0,1.30137480043828,1.51726221070292,1.44606617930089,0.8823517818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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3267 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5175 | |||
|TSSclassifier=S | |||
|UniProt=B3KUL1,E9PHX7,P52594 | |||
|association_with_transcript=17bp_to_NM_001135187,NM_001135188,NM_001135189,NM_004504,uc002vpc.2,uc002vpd.2,uc002vpe.2,uc002vpf.2_5end | |||
|description=CAGE_peak_3_at_AGFG1_5end | |||
|id=chr2:228336905..228336916,+ | |||
|ontology_enrichment_celltype=CL:0000860!4.67e-12!45;CL:0002057!2.66e-11!42;CL:0002009!2.95e-08!65;CL:0000557!7.03e-08!71;CL:0002194!1.01e-07!63;CL:0000576!1.01e-07!63;CL:0000040!1.01e-07!63;CL:0000559!1.01e-07!63;CL:0000839!3.32e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.60e-18;33!CL:0002057;3.60e-18;33!CL:0000473;1.26e-11;39!CL:0000234;1.26e-11;39!CL:0000576;1.22e-09;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.01e-18,42;CL:0002057,1.01e-18,42;CL:0000473,3.31e-15,48;CL:0000234,3.31e-15,48;CL:0002009,9.04e-11,61;CL:0002194,2.08e-10,59;CL:0000576,2.08e-10,59;CL:0000040,2.08e-10,59;CL:0000559,2.08e-10,59;CL:0000557,6.60e-10,67;CL:0000766,2.73e-09,72;CL:0000839,2.77e-09,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.89e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!2.17e-08!511;UBERON:0002371!4.48e-08!80;UBERON:0000480!5.11e-08!626;UBERON:0000923!5.55e-08!604;UBERON:0005291!5.55e-08!604;UBERON:0006598!5.55e-08!604;UBERON:0002532!5.55e-08!604;UBERON:0000922!6.02e-08!612;UBERON:0000467!6.54e-08!625;UBERON:0002050!8.77e-08!605;UBERON:0005423!8.77e-08!605;UBERON:0001474!1.43e-07!86;UBERON:0000468!5.43e-07!659 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.52e-10,82;UBERON:0002371,4.98e-10,76;UBERON:0004765,5.49e-10,90;UBERON:0001434,1.13e-08,100;UBERON:0003081,5.61e-08,203;UBERON:0002390,7.14e-08,98;UBERON:0003061,7.14e-08,98;UBERON:0002405,2.79e-07,93;UBERON:0002193,6.39e-07,108;UBERON:0002204,7.31e-07,167 | |||
|phase1_expression=1.09007027562334,0.642301571672949,0.563817616383885,0,0.446961094427288,0,0,0.631719873426831,0.783556884599516,0.737201809504527,0.697801167972428,0.436882744260345,0,0.247532705920093,0,0,1.20538905604795,0,0,0.123121058076788,0,0.313454721478088,0,0.136874425072884,0.251085279189606,0.61130724598361,0.492603536699674,0.865818594450472,0,0.383829398097213,1.23852898652861,0.919421224478927,0,0,2.24654881682875,0.142169232487422,0.293600439334847,1.66198622559563,1.60435557976113,1.30206522429511,0.223915474239924,0.32389366601898,0.515151135268373,0.872389432677388,1.51150377475524,0.970336244751265,2.32429036905685,2.05583944010913,1.85823822537062,5.75384784644301,4.09857130446561,3.31075121844019,3.44745680736619,0,1.35426486594342,0.941211697713023,1.09162460023138,0.898893937780338,2.44867113896722,2.24650318953266,3.19668562899521,3.95821560224059,1.99463657621632,2.55734850319616,3.48251086354301,1.13477044938228,0.622822248995575,1.50749199154046,2.08593167368081,1.95469960234605,1.81619850790011,2.20966581592539,2.84816148696796,0.211255286311942,0.212604299965044,0,0.44931452458598,1.20141514273205,0.64290234678832,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0.569212969109448,0,0,0,0.560508562981536,0,0.393419540227666,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0.130059347559878,0,0.276350017785848,0,0.14828656316206,0,0,0.339928028092699,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0,0,0,5.36560687762909,1.40648818027883,1.0843174571537,1.00267582127178,1.01392563272577,0.795285947051099,0.486634870302636,0.472674085820339,0.665188192387692,0.43917392846563,0.654895377488563,0,0,0.324547393654683,0.870648686496336,0.664789802594326,0.476981248610684,0,0.74291500265913,0.596287222100115,0,1.04142150482278,0.56530794192401,0,1.10047216776027,1.04497483268405,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,1.10298924103761,0,0.267899184852239,0.44905874525234,0.225222960966644,1.53316637465883,0,0,1.31780417436063,0,0.436094052142534,0.496971951695318,0.759783069987479,1.05927344650575,0.286836620748814,1.06400514659507,0.560677600142307,3.20246987189115,0,1.8672662123986,1.34710672069688,0.817309515567294,0.151357427644931,1.72852777344,0,0.312160076830321,1.1409436430889,0.149448680551801,0,0.485618833104395,0,0,0.122834317311768,0.206651562351531,0,1.23633464639278,0,0,0,0.125118519871964,0.277064115484183,0,0,0.45071417671979,0.907457465280168,0,0,0.635795703478686,0.600182192168805,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0.757301322732344,0.184099797284599,0.646584227275248,0,0.201504196455281,0.169560592310488,0.773043412653187,0.818238361772504,2.00763216772303,0.365921118388786,0.265059536642971,0.464775771478074,0.414644220061482,0.252320850875628,0.72995471815166,0,0,1.38134921352481,1.39310378409594,0,1.30137480043828,1.51726221070292,1.44606617930089,0.882351781859152,1.08939722046203,0.474541238222193,1.34831308160164,0.784885860501384,0.769494313892781,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.122988438543114,2.05881372358231,0.439001141634502,0,0.201057944823262,0.0925884451585296,0.325808305310325,0,1.44331342025273,0,1.05667824812239,0.577465791044295,0.462985512576611,0.380508304469197,0.790204397959275,0,0.246217006087397,0,0.891786973732369,0,1.51183915378974,3.1190521393325,0.447792613514241,0.290633938513962,0,1.47798971368783,0.264145302039678,0.414656231081544,0.432359860250884,0.50496973370552,0.253991577168676,0,0,0,0,0.901029173531752,0,0.448524337381443,0.43596006883328,0.51336800074665,0,0,0,0.531876233169741,0,0,1.41849132023278,0.266422179016099,0.285955987316295,0.542621605391443,0,0.325736184293735,0.710783897485092,0.791951872933429,0.602878754119172,0.871533458600294,1.09970290300263,0,0,0,0,0,0,0.434343920002738,0.821905290201534,0.716243852959582,0.112085143993527,0.197030760201927,0,0.256686072559497,0.254094624222463,1.30139853857622,0.773288812777695,0.670065061337395,1.91381625495949,0,0,0,0.858840442033979,0.500170521059677,0.271265023699736,0.623912584592421,0.713715955188647,0.630809660135739,0.35142424497814,0.300946099727719,0,0,1.32845119707087,0.368738337083406,0.695068915744663,0.195801157462741,0,0.413536052245775,0.215714200818617,0.426910231213777,1.21251028578504,0,0.30239029332968,0.248107807818777,0,0.561320188866147,0.128139149255701,0,0.482561763430822,0,0,0.710246901252508,0.328508624055237,0,0.464841513839837,0.483437798366489,0.802025881213139,0.644566922551274,1.26295892981067,0,0.262248829918848,0,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0.261435451024901,0,0.328014645699706,0,0.515205058238611,0.27470839445503,0.165018999841176,0,0,4.82051789532479,0.290012154876366,0.924291702687866,0.460511024178389,0,0.322260734604821,0.435050081742686,0.426133137080504,0.2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| |||
|short_description=p3@AGFG1 | |||
}} |
Revision as of 17:13, 12 September 2013
Short description: | p3@AGFG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_AGFG1_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_NM_001135187, NM_001135188, NM_001135189, NM_004504, uc002vpc.2, uc002vpd.2, uc002vpe.2, uc002vpf.2_5end |
EntrezGene: | AGFG1 |
HGNC: | 5175 |
UniProt: | B3KUL1E9PHX7P52594 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.01e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-18 | 42 |
defensive cell | 3.31e-15 | 48 |
phagocyte | 3.31e-15 | 48 |
macrophage dendritic cell progenitor | 9.04e-11 | 61 |
monopoietic cell | 2.08e-10 | 59 |
monocyte | 2.08e-10 | 59 |
monoblast | 2.08e-10 | 59 |
promonocyte | 2.08e-10 | 59 |
granulocyte monocyte progenitor cell | 6.60e-10 | 67 |
myeloid leukocyte | 2.73e-09 | 72 |
myeloid lineage restricted progenitor cell | 2.77e-09 | 66 |
Ontology term | p-value | n |
---|---|---|
bone element | 3.52e-10 | 82 |
bone marrow | 4.98e-10 | 76 |
skeletal element | 5.49e-10 | 90 |
skeletal system | 1.13e-08 | 100 |
lateral plate mesoderm | 5.61e-08 | 203 |
hematopoietic system | 7.14e-08 | 98 |
blood island | 7.14e-08 | 98 |
immune system | 2.79e-07 | 93 |
hemolymphoid system | 6.39e-07 | 108 |
musculoskeletal system | 7.31e-07 | 167 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.