FFCP PHASE1:Hg19::chr5:110560159..110560170,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=814|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1464|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000504090_5end|coexpression_cluster_id=C18|description=CAGE_peak_3_at_CAMK4_5end|id=chr5:110560159..110560170,+|ontology_enrichment_celltype=CL:0000542!1.02e-25!53;CL:0000051!1.02e-25!53;CL:0000838!5.24e-25!52;CL:0000084!3.97e-20!25;CL:0000827!3.97e-20!25;CL:0000791!1.20e-16!18;CL:0000789!1.20e-16!18;CL:0002420!1.20e-16!18;CL:0002419!1.20e-16!18;CL:0000790!1.20e-16!18;CL:0002087!1.77e-15!119;CL:0000738!5.71e-13!140;CL:0002031!6.79e-11!124;CL:0000625!7.36e-11!11;CL:0000624!5.04e-07!6|ontology_enrichment_celltype_v019=CL:0000084;3.80e-28;25!CL:0000791;1.18e-27;18!CL:0000789;1.18e-27;18!CL:0002419;1.18e-27;18!CL:0000625;2.79e-19;11!CL:0000542;2.46e-14;53!CL:0000624;5.74e-12;6!CL:0002087;4.02e-07;104!CL:0000898;8.39e-07;3|ontology_enrichment_celltype_v019_2=CL:0000542,1.61e-28,53;CL:0000051,1.61e-28,53;CL:0000084,3.18e-28,25;CL:0000827,3.18e-28,25;CL:0000791,1.20e-27,18;CL:0000789,1.20e-27,18;CL:0002420,1.20e-27,18;CL:0002419,1.20e-27,18;CL:0000790,1.20e-27,18;CL:0000838,2.47e-27,52;CL:0000625,2.89e-19,11;CL:0002087,1.43e-16,115;CL:0000738,1.37e-15,136;CL:0000624,5.65e-12,6;CL:0002031,1.21e-11,120;CL:0000037,3.65e-10,168;CL:0000988,4.93e-09,177;CL:0002032,2.47e-08,161;CL:0000837,2.47e-08,161;CL:0000898,7.98e-07,3|ontology_enrichment_development_v019=CL:0000790;1.18e-27;18!CL:0000051;2.46e-14;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.97e-21!115;UBERON:0002780!6.53e-14!41;UBERON:0001890!6.53e-14!41;UBERON:0006240!6.53e-14!41;UBERON:0002020!7.07e-14!34;UBERON:0003528!7.07e-14!34;UBERON:0001869!7.38e-14!32;UBERON:0001049!2.11e-13!57;UBERON:0005068!2.11e-13!57;UBERON:0006241!2.11e-13!57;UBERON:0007135!2.11e-13!57;UBERON:0003080!2.71e-13!42;UBERON:0001893!3.03e-13!34;UBERON:0002791!9.16e-13!33;UBERON:0001017!1.43e-12!82;UBERON:0003056!3.96e-12!61;UBERON:0002616!7.79e-12!59;UBERON:0000955!8.32e-12!69;UBERON:0006238!8.32e-12!69;UBERON:0005743!8.69e-12!86;UBERON:0003075!9.32e-12!86;UBERON:0007284!9.32e-12!86;UBERON:0002619!1.88e-11!22;UBERON:0000073!2.83e-11!94;UBERON:0001016!2.83e-11!94;UBERON:0002346!5.57e-11!90;UBERON:0001950!6.23e-11!20;UBERON:0000178!3.27e-10!15;UBERON:0000179!3.27e-10!15;UBERON:0000463!3.27e-10!15;UBERON:0000956!5.22e-10!25;UBERON:0000203!5.22e-10!25;UBERON:0000153!6.32e-09!129;UBERON:0007811!6.32e-09!129;UBERON:0000033!2.58e-07!123|ontology_enrichment_uberon_v019=UBERON:0000178;2.04e-14;15!UBERON:0000179;2.04e-14;15!UBERON:0000463;2.04e-14;15!UBERON:0002390;6.13e-13;32!UBERON:0002193;8.46e-09;42!UBERON:0001869;1.99e-08;32!UBERON:0002791;2.14e-08;32!UBERON:0004177;2.47e-08;5!UBERON:0005057;2.47e-08;5!UBERON:0003528;7.76e-08;34!UBERON:0002020;7.76e-08;34!UBERON:0001950;2.35e-07;20!UBERON:0001893;2.40e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.12e-14,15;UBERON:0000179,2.12e-14,15;UBERON:0000463,2.12e-14,15;UBERON:0007023,1.33e-09,114;UBERON:0002791,6.35e-09,32;UBERON:0001869,6.35e-09,32;UBERON:0004177,2.00e-08,7;UBERON:0005057,2.00e-08,7;UBERON:0003528,3.50e-08,34;UBERON:0002020,3.50e-08,34;UBERON:0001893,3.50e-08,34;UBERON:0001950,1.83e-07,20;UBERON:0000073,3.46e-07,53;UBERON:0002616,3.46e-07,53;UBERON:0002780,3.97e-07,41;UBERON:0001890,3.97e-07,41;UBERON:0003080,3.97e-07,41;UBERON:0006240,3.97e-07,41|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,1.14620108621927,1.06730766284929,0.865818594450472,0,4.60595277716655,0.77408061658038,0,0,0,0,0,0,2.21598163412751,1.40381113229099,1.30206522429511,0.223915474239924,1.94336199611388,0.515151135268373,0,1.51150377475524,0,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0.236482229888585,0.344745680736619,1.29096936716765,1.35426486594342,0,0,0.449446968890169,0,0.641858054152187,0.639337125799041,0,0,0,0.870627715885752,0,0,0,0,0,1.21079900526674,0.736555271975129,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.09227722252426,0.889509253863555,0,0.400395987036012,0,0.661044872784862,1.90810750907073,0,0.587237189370939,0.382273228125229,0,1.68152568894461,0,21.244655172294,16.5064520354649,16.0369169219617,13.7092926220356,23.4664031976185,21.305151258063,23.3792074089494,10.0269411196656,17.6763544484902,19.9380505125259,18.6854665997861,6.40456598628376,5.72261129263464,12.8261565590867,14.9229009604358,18.5473974870434,26.5432948060088,27.5567052932404,31.360657141493,14.2769771798933,14.9455992504749,14.7759801557531,16.4462799812677,16.8839669591771,16.2770863464105,6.65316431113862,14.0034860742329,13.5665807823683,9.99445812418767,13.733080618553,7.39015197228942,11.289977620585,8.02320587350522,15.4962112154595,0,0,0.12786256184353,0,0,0,0,0,0.567208902984407,0.443458794925128,1.40535657109002,0.72038491523742,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0.2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=814 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1464 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000504090_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_CAMK4_5end | |||
|id=chr5:110560159..110560170,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.02e-25!53;CL:0000051!1.02e-25!53;CL:0000838!5.24e-25!52;CL:0000084!3.97e-20!25;CL:0000827!3.97e-20!25;CL:0000791!1.20e-16!18;CL:0000789!1.20e-16!18;CL:0002420!1.20e-16!18;CL:0002419!1.20e-16!18;CL:0000790!1.20e-16!18;CL:0002087!1.77e-15!119;CL:0000738!5.71e-13!140;CL:0002031!6.79e-11!124;CL:0000625!7.36e-11!11;CL:0000624!5.04e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.80e-28;25!CL:0000791;1.18e-27;18!CL:0000789;1.18e-27;18!CL:0002419;1.18e-27;18!CL:0000625;2.79e-19;11!CL:0000542;2.46e-14;53!CL:0000624;5.74e-12;6!CL:0002087;4.02e-07;104!CL:0000898;8.39e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.61e-28,53;CL:0000051,1.61e-28,53;CL:0000084,3.18e-28,25;CL:0000827,3.18e-28,25;CL:0000791,1.20e-27,18;CL:0000789,1.20e-27,18;CL:0002420,1.20e-27,18;CL:0002419,1.20e-27,18;CL:0000790,1.20e-27,18;CL:0000838,2.47e-27,52;CL:0000625,2.89e-19,11;CL:0002087,1.43e-16,115;CL:0000738,1.37e-15,136;CL:0000624,5.65e-12,6;CL:0002031,1.21e-11,120;CL:0000037,3.65e-10,168;CL:0000988,4.93e-09,177;CL:0002032,2.47e-08,161;CL:0000837,2.47e-08,161;CL:0000898,7.98e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.18e-27;18!CL:0000051;2.46e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.97e-21!115;UBERON:0002780!6.53e-14!41;UBERON:0001890!6.53e-14!41;UBERON:0006240!6.53e-14!41;UBERON:0002020!7.07e-14!34;UBERON:0003528!7.07e-14!34;UBERON:0001869!7.38e-14!32;UBERON:0001049!2.11e-13!57;UBERON:0005068!2.11e-13!57;UBERON:0006241!2.11e-13!57;UBERON:0007135!2.11e-13!57;UBERON:0003080!2.71e-13!42;UBERON:0001893!3.03e-13!34;UBERON:0002791!9.16e-13!33;UBERON:0001017!1.43e-12!82;UBERON:0003056!3.96e-12!61;UBERON:0002616!7.79e-12!59;UBERON:0000955!8.32e-12!69;UBERON:0006238!8.32e-12!69;UBERON:0005743!8.69e-12!86;UBERON:0003075!9.32e-12!86;UBERON:0007284!9.32e-12!86;UBERON:0002619!1.88e-11!22;UBERON:0000073!2.83e-11!94;UBERON:0001016!2.83e-11!94;UBERON:0002346!5.57e-11!90;UBERON:0001950!6.23e-11!20;UBERON:0000178!3.27e-10!15;UBERON:0000179!3.27e-10!15;UBERON:0000463!3.27e-10!15;UBERON:0000956!5.22e-10!25;UBERON:0000203!5.22e-10!25;UBERON:0000153!6.32e-09!129;UBERON:0007811!6.32e-09!129;UBERON:0000033!2.58e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.04e-14;15!UBERON:0000179;2.04e-14;15!UBERON:0000463;2.04e-14;15!UBERON:0002390;6.13e-13;32!UBERON:0002193;8.46e-09;42!UBERON:0001869;1.99e-08;32!UBERON:0002791;2.14e-08;32!UBERON:0004177;2.47e-08;5!UBERON:0005057;2.47e-08;5!UBERON:0003528;7.76e-08;34!UBERON:0002020;7.76e-08;34!UBERON:0001950;2.35e-07;20!UBERON:0001893;2.40e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.12e-14,15;UBERON:0000179,2.12e-14,15;UBERON:0000463,2.12e-14,15;UBERON:0007023,1.33e-09,114;UBERON:0002791,6.35e-09,32;UBERON:0001869,6.35e-09,32;UBERON:0004177,2.00e-08,7;UBERON:0005057,2.00e-08,7;UBERON:0003528,3.50e-08,34;UBERON:0002020,3.50e-08,34;UBERON:0001893,3.50e-08,34;UBERON:0001950,1.83e-07,20;UBERON:0000073,3.46e-07,53;UBERON:0002616,3.46e-07,53;UBERON:0002780,3.97e-07,41;UBERON:0001890,3.97e-07,41;UBERON:0003080,3.97e-07,41;UBERON:0006240,3.97e-07,41 | |||
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| |||
|short_description=p3@CAMK4 | |||
}} |
Revision as of 12:38, 13 September 2013
Short description: | p3@CAMK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CAMK4_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000504090_5end |
EntrezGene: | CAMK4 |
HGNC: | 1464 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.61e-28 | 53 |
common lymphoid progenitor | 1.61e-28 | 53 |
T cell | 3.18e-28 | 25 |
pro-T cell | 3.18e-28 | 25 |
mature alpha-beta T cell | 1.20e-27 | 18 |
alpha-beta T cell | 1.20e-27 | 18 |
immature T cell | 1.20e-27 | 18 |
mature T cell | 1.20e-27 | 18 |
immature alpha-beta T cell | 1.20e-27 | 18 |
lymphoid lineage restricted progenitor cell | 2.47e-27 | 52 |
CD8-positive, alpha-beta T cell | 2.89e-19 | 11 |
nongranular leukocyte | 1.43e-16 | 115 |
leukocyte | 1.37e-15 | 136 |
CD4-positive, alpha-beta T cell | 5.65e-12 | 6 |
hematopoietic lineage restricted progenitor cell | 1.21e-11 | 120 |
hematopoietic stem cell | 3.65e-10 | 168 |
hematopoietic cell | 4.93e-09 | 177 |
hematopoietic oligopotent progenitor cell | 2.47e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.47e-08 | 161 |
naive T cell | 7.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.12e-14 | 15 |
haemolymphatic fluid | 2.12e-14 | 15 |
organism substance | 2.12e-14 | 15 |
adult organism | 1.33e-09 | 114 |
regional part of telencephalon | 6.35e-09 | 32 |
cerebral hemisphere | 6.35e-09 | 32 |
hemopoietic organ | 2.00e-08 | 7 |
immune organ | 2.00e-08 | 7 |
brain grey matter | 3.50e-08 | 34 |
gray matter | 3.50e-08 | 34 |
telencephalon | 3.50e-08 | 34 |
neocortex | 1.83e-07 | 20 |
regional part of nervous system | 3.46e-07 | 53 |
regional part of brain | 3.46e-07 | 53 |
regional part of forebrain | 3.97e-07 | 41 |
forebrain | 3.97e-07 | 41 |
anterior neural tube | 3.97e-07 | 41 |
future forebrain | 3.97e-07 | 41 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.