FFCP PHASE1:Hg19::chr5:58335205..58335231,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5144|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8783|TSSclassifier=S|UniProt=Q08499|association_with_transcript=107bp_to_ENST00000358923,NM_001197221,NM_001197222,uc003jrt.2_5end|coexpression_cluster_id=C2824|description=CAGE_peak_5_at_PDE4D_5end|id=chr5:58335205..58335231,-|ontology_enrichment_celltype=CL:0002057!6.04e-15!42;CL:0000860!7.33e-13!45;CL:0000738!3.59e-11!140;CL:0000084!3.84e-11!25;CL:0000827!3.84e-11!25;CL:0000791!1.35e-10!18;CL:0000789!1.35e-10!18;CL:0002420!1.35e-10!18;CL:0002419!1.35e-10!18;CL:0000790!1.35e-10!18;CL:0002087!3.88e-10!119;CL:0000134!1.97e-08!358;CL:0000048!2.07e-08!430;CL:0000766!2.16e-08!76;CL:0002320!2.17e-08!365;CL:0000037!3.31e-08!172;CL:0000566!3.31e-08!172;CL:0002031!1.80e-07!124;CL:0000723!2.31e-07!436;CL:0000988!2.32e-07!182;CL:0000034!3.11e-07!444;CL:0002194!4.05e-07!63;CL:0000576!4.05e-07!63;CL:0000040!4.05e-07!63;CL:0000559!4.05e-07!63;CL:0002032!6.84e-07!165;CL:0000837!6.84e-07!165|ontology_enrichment_celltype_v019=CL:0000860;6.36e-16;33!CL:0002057;6.36e-16;33!CL:0000084;9.24e-13;25!CL:0000791;4.21e-12;18!CL:0000789;4.21e-12;18!CL:0002419;4.21e-12;18!CL:0000473;3.51e-10;39!CL:0000234;3.51e-10;39!CL:0000576;6.15e-10;48|ontology_enrichment_celltype_v019_2=CL:0000860,4.54e-17,42;CL:0002057,4.54e-17,42;CL:0000738,6.76e-16,136;CL:0002087,2.14e-15,115;CL:0000037,2.80e-13,168;CL:0000473,4.63e-13,48;CL:0000234,4.63e-13,48;CL:0000084,1.05e-12,25;CL:0000827,1.05e-12,25;CL:0000988,1.11e-12,177;CL:0000791,3.11e-12,18;CL:0000789,3.11e-12,18;CL:0002420,3.11e-12,18;CL:0002419,3.11e-12,18;CL:0000790,3.11e-12,18;CL:0000766,1.16e-11,72;CL:0002031,2.62e-11,120;CL:0002032,3.49e-11,161;CL:0000837,3.49e-11,161;CL:0002194,3.14e-10,59;CL:0000576,3.14e-10,59;CL:0000040,3.14e-10,59;CL:0000559,3.14e-10,59;CL:0000048,6.93e-10,427;CL:0000134,8.25e-10,354;CL:0002320,1.33e-09,361;CL:0002009,1.90e-09,61;CL:0000034,3.12e-09,441;CL:0000723,4.37e-09,433;CL:0000557,3.03e-08,67;CL:0000839,9.38e-08,66;CL:0000219,3.52e-07,386;CL:0000763,4.10e-07,108;CL:0000049,4.10e-07,108|ontology_enrichment_development_v019=CL:0002057;1.23e-12;42!CL:0000790;4.21e-12;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!8.00e-12!102;UBERON:0003061!8.00e-12!102;UBERON:0002193!4.54e-10!112;UBERON:0002384!5.41e-08!375;UBERON:0003081!2.39e-07!216;UBERON:0002204!3.53e-07!167;UBERON:0000178!4.78e-07!15;UBERON:0000179!4.78e-07!15;UBERON:0000463!4.78e-07!15|ontology_enrichment_uberon_v019=UBERON:0002390;1.09e-08;32!UBERON:0000178;2.30e-08;15!UBERON:0000179;2.30e-08;15!UBERON:0000463;2.30e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.38e-16,98;UBERON:0003061,1.38e-16,98;UBERON:0002193,4.10e-14,108;UBERON:0002405,8.57e-09,93;UBERON:0002371,1.26e-08,76;UBERON:0000178,1.41e-08,15;UBERON:0000179,1.41e-08,15;UBERON:0000463,1.41e-08,15;UBERON:0002384,1.42e-08,371;UBERON:0003081,3.47e-08,203;UBERON:0002204,1.01e-07,167;UBERON:0001474,1.21e-07,82;UBERON:0001434,4.86e-07,100;UBERON:0004765,8.79e-07,90|phase1_expression=0.181678379270557,0,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0.522371256399677,1.22866968250754,2.09340350391728,2.62129646556207,1.31883489114227,0.990130823680373,0.662794751455832,0,0,0,0.975865597581014,0.246242116153576,0,0,0,0.410623275218653,0.376627918784408,0,0,0,16.9146639045029,31.0901812458742,27.5572699502615,0,0.30120591877825,0.369754010166788,0,0,2.05520307534393,17.7278530730201,11.0299446108578,11.0675544065084,0.447830948479849,1.6194683300949,1.03030227053675,3.05336301437086,1.51150377475524,2.18325655069035,4.18372266430232,3.28934310417461,3.71647645074124,5.75384784644301,6.66017836975662,5.67557351732605,11.721353145045,7.10033151942209,6.77132432971709,6.58848188399116,3.547779950752,2.9214052977861,16.8346140803996,11.2325159476633,8.95071976118658,7.25672860410775,5.38551875578406,5.54092175692502,4.35313857942876,0.56738522469114,1.86846674698672,8.54245461872927,8.86520961314342,6.5156653411535,3.63239701580021,1.47311054395026,2.53169909952708,2.5350634357433,0.637812899895131,1.04829322754188,5.16711703273877,2.70318407114711,1.92870704036496,0.855038231223746,0.39783335439818,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,1.17447437874188,0.764546456250458,7.93027971474155,13.4522055115569,1.84368859342554,25.5722701147983,38.5150547494181,48.3163522648847,1.5046784585161,6.19252306603822,3.31413464014313,1.94826728407911,15.9316953345798,12.3734481139432,9.52595746709571,2.70803863765016,3.84273959177025,6.50296737799391,10.1951500854279,15.7519510137934,16.518775886898,11.2697788003166,5.61835738988397,5.22677619024884,11.3309342697566,26.0589935649306,13.4014703738226,13.1570239850141,3.50421955756506,1.95325036156926,0.950452044448374,4.21610333417764,3.58362511232371,9.99445812418767,4.2619905367923,3.28451198768419,40.9261688746207,25.6742587952167,32.1510176619814,0,0,0.383587685530591,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8783 | |||
|TSSclassifier=S | |||
|UniProt=Q08499 | |||
|association_with_transcript=107bp_to_ENST00000358923,NM_001197221,NM_001197222,uc003jrt.2_5end | |||
|coexpression_cluster_id=C2824 | |||
|description=CAGE_peak_5_at_PDE4D_5end | |||
|id=chr5:58335205..58335231,- | |||
|ontology_enrichment_celltype=CL:0002057!6.04e-15!42;CL:0000860!7.33e-13!45;CL:0000738!3.59e-11!140;CL:0000084!3.84e-11!25;CL:0000827!3.84e-11!25;CL:0000791!1.35e-10!18;CL:0000789!1.35e-10!18;CL:0002420!1.35e-10!18;CL:0002419!1.35e-10!18;CL:0000790!1.35e-10!18;CL:0002087!3.88e-10!119;CL:0000134!1.97e-08!358;CL:0000048!2.07e-08!430;CL:0000766!2.16e-08!76;CL:0002320!2.17e-08!365;CL:0000037!3.31e-08!172;CL:0000566!3.31e-08!172;CL:0002031!1.80e-07!124;CL:0000723!2.31e-07!436;CL:0000988!2.32e-07!182;CL:0000034!3.11e-07!444;CL:0002194!4.05e-07!63;CL:0000576!4.05e-07!63;CL:0000040!4.05e-07!63;CL:0000559!4.05e-07!63;CL:0002032!6.84e-07!165;CL:0000837!6.84e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.36e-16;33!CL:0002057;6.36e-16;33!CL:0000084;9.24e-13;25!CL:0000791;4.21e-12;18!CL:0000789;4.21e-12;18!CL:0002419;4.21e-12;18!CL:0000473;3.51e-10;39!CL:0000234;3.51e-10;39!CL:0000576;6.15e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.54e-17,42;CL:0002057,4.54e-17,42;CL:0000738,6.76e-16,136;CL:0002087,2.14e-15,115;CL:0000037,2.80e-13,168;CL:0000473,4.63e-13,48;CL:0000234,4.63e-13,48;CL:0000084,1.05e-12,25;CL:0000827,1.05e-12,25;CL:0000988,1.11e-12,177;CL:0000791,3.11e-12,18;CL:0000789,3.11e-12,18;CL:0002420,3.11e-12,18;CL:0002419,3.11e-12,18;CL:0000790,3.11e-12,18;CL:0000766,1.16e-11,72;CL:0002031,2.62e-11,120;CL:0002032,3.49e-11,161;CL:0000837,3.49e-11,161;CL:0002194,3.14e-10,59;CL:0000576,3.14e-10,59;CL:0000040,3.14e-10,59;CL:0000559,3.14e-10,59;CL:0000048,6.93e-10,427;CL:0000134,8.25e-10,354;CL:0002320,1.33e-09,361;CL:0002009,1.90e-09,61;CL:0000034,3.12e-09,441;CL:0000723,4.37e-09,433;CL:0000557,3.03e-08,67;CL:0000839,9.38e-08,66;CL:0000219,3.52e-07,386;CL:0000763,4.10e-07,108;CL:0000049,4.10e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.23e-12;42!CL:0000790;4.21e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.00e-12!102;UBERON:0003061!8.00e-12!102;UBERON:0002193!4.54e-10!112;UBERON:0002384!5.41e-08!375;UBERON:0003081!2.39e-07!216;UBERON:0002204!3.53e-07!167;UBERON:0000178!4.78e-07!15;UBERON:0000179!4.78e-07!15;UBERON:0000463!4.78e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;1.09e-08;32!UBERON:0000178;2.30e-08;15!UBERON:0000179;2.30e-08;15!UBERON:0000463;2.30e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.38e-16,98;UBERON:0003061,1.38e-16,98;UBERON:0002193,4.10e-14,108;UBERON:0002405,8.57e-09,93;UBERON:0002371,1.26e-08,76;UBERON:0000178,1.41e-08,15;UBERON:0000179,1.41e-08,15;UBERON:0000463,1.41e-08,15;UBERON:0002384,1.42e-08,371;UBERON:0003081,3.47e-08,203;UBERON:0002204,1.01e-07,167;UBERON:0001474,1.21e-07,82;UBERON:0001434,4.86e-07,100;UBERON:0004765,8.79e-07,90 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0.522371256399677,1.22866968250754,2.09340350391728,2.62129646556207,1.31883489114227,0.990130823680373,0.662794751455832,0,0,0,0.975865597581014,0.246242116153576,0,0,0,0.410623275218653,0.376627918784408,0,0,0,16.9146639045029,31.0901812458742,27.5572699502615,0,0.30120591877825,0.369754010166788,0,0,2.05520307534393,17.7278530730201,11.0299446108578,11.0675544065084,0.447830948479849,1.6194683300949,1.03030227053675,3.05336301437086,1.51150377475524,2.18325655069035,4.18372266430232,3.28934310417461,3.71647645074124,5.75384784644301,6.66017836975662,5.67557351732605,11.721353145045,7.10033151942209,6.77132432971709,6.58848188399116,3.547779950752,2.9214052977861,16.8346140803996,11.2325159476633,8.95071976118658,7.25672860410775,5.38551875578406,5.54092175692502,4.35313857942876,0.56738522469114,1.86846674698672,8.54245461872927,8.86520961314342,6.5156653411535,3.63239701580021,1.47311054395026,2.53169909952708,2.5350634357433,0.637812899895131,1.04829322754188,5.16711703273877,2.70318407114711,1.92870704036496,0.855038231223746,0.39783335439818,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,1.17447437874188,0.764546456250458,7.93027971474155,13.4522055115569,1.84368859342554,25.5722701147983,38.5150547494181,48.3163522648847,1.5046784585161,6.19252306603822,3.31413464014313,1.94826728407911,15.9316953345798,12.3734481139432,9.52595746709571,2.70803863765016,3.84273959177025,6.50296737799391,10.1951500854279,15.7519510137934,16.518775886898,11.2697788003166,5.61835738988397,5.22677619024884,11.3309342697566,26.0589935649306,13.4014703738226,13.1570239850141,3.50421955756506,1.95325036156926,0.950452044448374,4.21610333417764,3.58362511232371,9.99445812418767,4.2619905367923,3.28451198768419,40.9261688746207,25.6742587952167,32.1510176619814,0,0,0.383587685530591,1.44575660953827,0.50133791063589,1.88300474649071,1.5905718941022,1.94653948121054,0.378139268656271,1.10864698731282,0.966182642624386,0.654895377488563,0,0,0,0,0,4.5313218618015,3.43196946468077,6.68623502393217,0.198762407366705,2.58070378531837,0.347140501607594,0,0,0,0.417989933073621,0,0,0.66944122552934,0,1.52054421143703,0,0.367663080345869,0,0,0,0.225222960966644,0,0,0.183201743930407,15.8136500923276,19.3890132074163,0,0,0.25326102332916,0.397227542439656,0.286836620748814,0.354668382198357,1.12135520028461,1.06748995729705,0,0.311211035399766,1.88594940897563,0.817309515567294,1.96764655938411,0.576175924479999,6.09235722767871,1.87296046098192,0,0.298897361103602,5.51942143625695,3.39933183173076,1.26405726032024,2.04154171254893,1.10550885580591,3.40975077880026,4.75201142912821,3.21447008062124,0.910161361938026,0.718618141816238,0.336672227908132,1.12606667884768,1.38532057742091,1.75591048352335,0.919463387397059,6.91095070970345,0.794025282120147,3.04962380671065,2.56268866582281,1.05965950579781,0.900273288253207,2.06105058476878,1.8034837803194,0.744467425326359,1.0126579934476,0.0974370051611986,0.757301322732344,0.552299391853796,0.323292113637624,0.355009592516614,0.201504196455281,1.01736355386293,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,1.38134921352481,0.928735856063958,0,0.118306800039844,0.168584690078102,0.241011029883482,0.441175890929576,0.435758888184812,0,0.134831308160164,0,0,0,1.40241773803446,0,1.47008711385542,0,0.982827216677626,0,0,0.245976877086227,1.02940686179115,0,0,0,0.185176890317059,2.28065813717227,2.07986957055916,1.44331342025273,0.115930404975077,0.70445216541493,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0.447792613514241,0,0,0,0,0.414656231081544,0.576479813667846,0,0.380987365753014,1.52795370223311,0,3.4214489204541,0.102827492703324,0.300343057843917,0.285826432630578,2.13049060256185,0.43596006883328,1.9067954313447,2.19761916788222,0,0,0,0,1.80045161983499,0,1.0656887160644,2.00169191121407,2.71310802695722,1.64648067356154,2.28015329005615,1.42156779497018,3.16780749173372,0.301439377059586,0,0.599837947092342,0,0.502257091432126,0,0.239624855491583,0,0,0.868687840005475,1.64381058040307,0.716243852959582,17.3731973189967,32.3130446731161,28.4628398814563,34.2675906866928,0,0,0,0,0,0.749007023947182,5.9832291840805,5.38740167466846,1.34960640891054,1.00034104211935,1.62759014219841,0.207970861530807,0.178428988797162,0.315404830067869,0.234282829985426,0,0,3.10419213877515,1.32845119707087,2.39679919104214,0.434418072340414,0,0,20.4700345861659,13.5899946515729,24.8675209682025,0.909382714338778,0,1.20956117331872,0,0.920771839728375,0.280660094433074,0.384417447767103,1.02341449813341,0.804269605718038,0,0.154209693802656,0,0.410635780069046,3.11552657510173,0.232420756919918,0.362578348774867,0,0.736647911487171,1.14814448164607,1.27463817604702,0,0.902399225814824,1.00119938235739,0.784349769176855,1.46139224653261,2.21658420675039,0,0.170093705276516,0.863663664408557,0,1.08378575017541,0,0.254876273045038,0.831076008928724,0.447749509444357,0.438519753291869,0,0,0,1.626891973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| |||
|short_description=p5@PDE4D | |||
}} |
Revision as of 16:00, 13 September 2013
Short description: | p5@PDE4D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_PDE4D_5end |
Coexpression cluster: | C2824_CD4_CD8_heart_skeletal_Natural_Basophils_Peripheral |
Association with transcript: | 107bp_to_ENST00000358923, NM_001197221, NM_001197222, uc003jrt.2_5end |
EntrezGene: | PDE4D |
HGNC: | 8783 |
UniProt: | Q08499 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.38e-16 | 98 |
blood island | 1.38e-16 | 98 |
hemolymphoid system | 4.10e-14 | 108 |
immune system | 8.57e-09 | 93 |
bone marrow | 1.26e-08 | 76 |
blood | 1.41e-08 | 15 |
haemolymphatic fluid | 1.41e-08 | 15 |
organism substance | 1.41e-08 | 15 |
connective tissue | 1.42e-08 | 371 |
lateral plate mesoderm | 3.47e-08 | 203 |
musculoskeletal system | 1.01e-07 | 167 |
bone element | 1.21e-07 | 82 |
skeletal system | 4.86e-07 | 100 |
skeletal element | 8.79e-07 | 90 |
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