FFCP PHASE1:Hg19::chr7:94056489..94056511,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1278|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2198|TSSclassifier=S|UniProt=|association_with_transcript=-112bp_to_ENST00000464916_5end|coexpression_cluster_id=C59|description=CAGE_peak_16_at_COL1A2_5end|id=chr7:94056489..94056511,+|ontology_enrichment_celltype=CL:0000055!5.31e-44!180;CL:0000057!1.21e-25!75;CL:0000680!2.06e-21!57;CL:0000056!2.06e-21!57;CL:0000355!2.06e-21!57;CL:0000187!3.12e-20!54;CL:0000183!2.27e-19!59;CL:0000393!4.20e-17!60;CL:0000211!4.20e-17!60;CL:0000192!7.05e-16!42;CL:0000514!7.05e-16!42;CL:0000048!2.03e-15!430;CL:0000723!1.92e-14!436;CL:0000034!8.20e-14!444;CL:0000359!8.79e-13!32;CL:0002334!1.27e-09!12;CL:0002620!1.86e-09!23;CL:0000499!1.56e-07!27;CL:0002371!1.58e-07!591;CL:0000327!3.79e-07!14;CL:0002494!6.96e-07!16|ontology_enrichment_celltype_v019=CL:0002334;2.47e-11;12!CL:0000359;1.33e-10;32!CL:0000499;1.74e-10;28!CL:0000327;1.22e-08;15!CL:0002620;1.24e-08;23!CL:0000192;1.35e-08;43!CL:0000057;1.50e-08;73!CL:0002320;2.87e-08;188!CL:0000153;3.97e-07;9!CL:0000447;3.97e-07;9!CL:0002539;5.06e-07;10!CL:0000187;6.41e-07;55|ontology_enrichment_celltype_v019_2=CL:0000057,3.79e-23,76;CL:0000048,5.96e-19,427;CL:0000723,3.76e-18,433;CL:0000034,4.00e-17,441;CL:0000680,7.20e-13,58;CL:0000056,7.20e-13,58;CL:0000355,7.20e-13,58;CL:0000187,3.86e-12,55;CL:0000192,5.29e-12,43;CL:0000514,5.29e-12,43;CL:0002334,1.35e-11,12;CL:0000359,1.11e-10,32;CL:0002320,1.28e-10,361;CL:0000499,1.33e-10,28;CL:0000393,4.79e-10,61;CL:0000211,4.79e-10,61;CL:0000134,1.37e-09,354;CL:0002620,9.49e-09,23;CL:0000327,9.92e-09,15;CL:0002539,3.37e-07,10;CL:0000153,4.56e-07,9;CL:0000447,4.56e-07,9;CL:0000219,5.84e-07,386|ontology_enrichment_development_v019=CL:0000514;1.35e-08;43!CL:0000355;4.12e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!1.28e-23!83;UBERON:0002329!1.28e-23!83;UBERON:0003077!1.28e-23!83;UBERON:0003059!1.28e-23!83;UBERON:0007282!1.28e-23!83;UBERON:0009618!1.28e-23!83;UBERON:0007285!1.28e-23!83;UBERON:0004290!1.06e-22!70;UBERON:0001134!1.94e-21!61;UBERON:0002036!1.94e-21!61;UBERON:0003082!1.94e-21!61;UBERON:0002385!4.61e-21!63;UBERON:0001015!4.61e-21!63;UBERON:0000383!4.61e-21!63;UBERON:0000486!2.05e-18!82;UBERON:0005256!2.42e-12!143;UBERON:0004872!1.36e-10!84;UBERON:0001637!7.72e-10!42;UBERON:0003509!7.72e-10!42;UBERON:0004572!7.72e-10!42;UBERON:0002100!4.59e-09!216;UBERON:0002199!5.01e-09!45;UBERON:0002416!5.01e-09!45;UBERON:0004573!5.12e-09!33;UBERON:0004571!5.12e-09!33;UBERON:0003102!3.67e-08!95;UBERON:0000490!6.00e-08!138;UBERON:0000475!6.25e-08!365;UBERON:0002097!8.64e-08!40|ontology_enrichment_uberon_v019=UBERON:0004457;2.77e-09;9!UBERON:0000042;2.77e-09;9!UBERON:0003688;1.70e-08;6!UBERON:0002358;1.70e-08;6!UBERON:0003684;1.70e-08;6!UBERON:0001178;1.70e-08;6!UBERON:0002384;1.79e-08;198!UBERON:0004573;2.45e-08;33!UBERON:0004571;2.45e-08;33!UBERON:0002385;2.31e-07;31!UBERON:0001015;2.31e-07;31!UBERON:0000383;2.31e-07;31!UBERON:0002097;4.42e-07;41!UBERON:0004237;5.06e-07;10!UBERON:0004695;5.06e-07;10!UBERON:0002111;5.06e-07;10!UBERON:0004178;5.06e-07;10!UBERON:0002199;6.75e-07;46!UBERON:0002416;6.75e-07;46!UBERON:0001637;7.58e-07;42!UBERON:0003509;7.58e-07;42!UBERON:0004572;7.58e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0007524,7.10e-14,73;UBERON:0001134,1.37e-13,62;UBERON:0002036,1.37e-13,62;UBERON:0003082,1.37e-13,62;UBERON:0002329,1.96e-13,71;UBERON:0003059,1.96e-13,71;UBERON:0007282,1.96e-13,71;UBERON:0004290,1.96e-13,71;UBERON:0009618,1.96e-13,71;UBERON:0003077,4.35e-13,72;UBERON:0007285,4.35e-13,72;UBERON:0002385,7.86e-13,64;UBERON:0001015,7.86e-13,64;UBERON:0000383,7.86e-13,64;UBERON:0000486,1.12e-11,83;UBERON:0007503,3.24e-11,78;UBERON:0002384,5.22e-11,371;UBERON:0001637,1.03e-10,42;UBERON:0003509,1.03e-10,42;UBERON:0004572,1.03e-10,42;UBERON:0002199,5.29e-10,46;UBERON:0002416,5.29e-10,46;UBERON:0005256,4.66e-09,122;UBERON:0004573,6.00e-09,33;UBERON:0004571,6.00e-09,33;UBERON:0002097,6.12e-09,41;UBERON:0003688,1.65e-08,6;UBERON:0002358,1.65e-08,6;UBERON:0003684,1.65e-08,6;UBERON:0001178,1.65e-08,6;UBERON:0004872,2.57e-08,83;UBERON:0003104,3.46e-08,160;UBERON:0009142,3.46e-08,160;UBERON:0003102,3.27e-07,99;UBERON:0004237,3.37e-07,10;UBERON:0004695,3.37e-07,10;UBERON:0002111,3.37e-07,10;UBERON:0004178,3.37e-07,10;UBERON:0007500,7.57e-07,59;UBERON:0001981,7.57e-07,59;UBERON:0004537,7.57e-07,59;UBERON:0006965,7.57e-07,59|phase1_expression=5.26867299884614,8.13581990785736,3.94672331468719,8.00586386825043,8.04529969969118,4.36169262050184,2.53299878168311,0,0.783556884599516,0.245733936501509,0,0,1.05506791291381,0.618831764800233,0.331397375727916,1.34465029290355,1.80808358407193,1.46062018077475,2.43966399395253,0.492484232307152,0.816002764977012,0.626909442956176,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1278 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2198 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-112bp_to_ENST00000464916_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_16_at_COL1A2_5end | |||
|id=chr7:94056489..94056511,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.31e-44!180;CL:0000057!1.21e-25!75;CL:0000680!2.06e-21!57;CL:0000056!2.06e-21!57;CL:0000355!2.06e-21!57;CL:0000187!3.12e-20!54;CL:0000183!2.27e-19!59;CL:0000393!4.20e-17!60;CL:0000211!4.20e-17!60;CL:0000192!7.05e-16!42;CL:0000514!7.05e-16!42;CL:0000048!2.03e-15!430;CL:0000723!1.92e-14!436;CL:0000034!8.20e-14!444;CL:0000359!8.79e-13!32;CL:0002334!1.27e-09!12;CL:0002620!1.86e-09!23;CL:0000499!1.56e-07!27;CL:0002371!1.58e-07!591;CL:0000327!3.79e-07!14;CL:0002494!6.96e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.47e-11;12!CL:0000359;1.33e-10;32!CL:0000499;1.74e-10;28!CL:0000327;1.22e-08;15!CL:0002620;1.24e-08;23!CL:0000192;1.35e-08;43!CL:0000057;1.50e-08;73!CL:0002320;2.87e-08;188!CL:0000153;3.97e-07;9!CL:0000447;3.97e-07;9!CL:0002539;5.06e-07;10!CL:0000187;6.41e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.79e-23,76;CL:0000048,5.96e-19,427;CL:0000723,3.76e-18,433;CL:0000034,4.00e-17,441;CL:0000680,7.20e-13,58;CL:0000056,7.20e-13,58;CL:0000355,7.20e-13,58;CL:0000187,3.86e-12,55;CL:0000192,5.29e-12,43;CL:0000514,5.29e-12,43;CL:0002334,1.35e-11,12;CL:0000359,1.11e-10,32;CL:0002320,1.28e-10,361;CL:0000499,1.33e-10,28;CL:0000393,4.79e-10,61;CL:0000211,4.79e-10,61;CL:0000134,1.37e-09,354;CL:0002620,9.49e-09,23;CL:0000327,9.92e-09,15;CL:0002539,3.37e-07,10;CL:0000153,4.56e-07,9;CL:0000447,4.56e-07,9;CL:0000219,5.84e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;1.35e-08;43!CL:0000355;4.12e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.28e-23!83;UBERON:0002329!1.28e-23!83;UBERON:0003077!1.28e-23!83;UBERON:0003059!1.28e-23!83;UBERON:0007282!1.28e-23!83;UBERON:0009618!1.28e-23!83;UBERON:0007285!1.28e-23!83;UBERON:0004290!1.06e-22!70;UBERON:0001134!1.94e-21!61;UBERON:0002036!1.94e-21!61;UBERON:0003082!1.94e-21!61;UBERON:0002385!4.61e-21!63;UBERON:0001015!4.61e-21!63;UBERON:0000383!4.61e-21!63;UBERON:0000486!2.05e-18!82;UBERON:0005256!2.42e-12!143;UBERON:0004872!1.36e-10!84;UBERON:0001637!7.72e-10!42;UBERON:0003509!7.72e-10!42;UBERON:0004572!7.72e-10!42;UBERON:0002100!4.59e-09!216;UBERON:0002199!5.01e-09!45;UBERON:0002416!5.01e-09!45;UBERON:0004573!5.12e-09!33;UBERON:0004571!5.12e-09!33;UBERON:0003102!3.67e-08!95;UBERON:0000490!6.00e-08!138;UBERON:0000475!6.25e-08!365;UBERON:0002097!8.64e-08!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.77e-09;9!UBERON:0000042;2.77e-09;9!UBERON:0003688;1.70e-08;6!UBERON:0002358;1.70e-08;6!UBERON:0003684;1.70e-08;6!UBERON:0001178;1.70e-08;6!UBERON:0002384;1.79e-08;198!UBERON:0004573;2.45e-08;33!UBERON:0004571;2.45e-08;33!UBERON:0002385;2.31e-07;31!UBERON:0001015;2.31e-07;31!UBERON:0000383;2.31e-07;31!UBERON:0002097;4.42e-07;41!UBERON:0004237;5.06e-07;10!UBERON:0004695;5.06e-07;10!UBERON:0002111;5.06e-07;10!UBERON:0004178;5.06e-07;10!UBERON:0002199;6.75e-07;46!UBERON:0002416;6.75e-07;46!UBERON:0001637;7.58e-07;42!UBERON:0003509;7.58e-07;42!UBERON:0004572;7.58e-07;42 | |||
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| |||
|short_description=p16@COL1A2 | |||
}} |
Revision as of 02:31, 14 September 2013
Short description: | p16@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_16_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -112bp_to_ENST00000464916_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.79e-23 | 76 |
multi fate stem cell | 5.96e-19 | 427 |
somatic stem cell | 3.76e-18 | 433 |
stem cell | 4.00e-17 | 441 |
muscle precursor cell | 7.20e-13 | 58 |
myoblast | 7.20e-13 | 58 |
multi-potent skeletal muscle stem cell | 7.20e-13 | 58 |
muscle cell | 3.86e-12 | 55 |
smooth muscle cell | 5.29e-12 | 43 |
smooth muscle myoblast | 5.29e-12 | 43 |
preadipocyte | 1.35e-11 | 12 |
vascular associated smooth muscle cell | 1.11e-10 | 32 |
connective tissue cell | 1.28e-10 | 361 |
stromal cell | 1.33e-10 | 28 |
electrically responsive cell | 4.79e-10 | 61 |
electrically active cell | 4.79e-10 | 61 |
mesenchymal cell | 1.37e-09 | 354 |
skin fibroblast | 9.49e-09 | 23 |
extracellular matrix secreting cell | 9.92e-09 | 15 |
aortic smooth muscle cell | 3.37e-07 | 10 |
GAG secreting cell | 4.56e-07 | 9 |
carbohydrate secreting cell | 4.56e-07 | 9 |
motile cell | 5.84e-07 | 386 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.