FFCP PHASE1:Hg19::chrX:114248361..114248415,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4845|description=CAGE_peak_at_chrX:114248361..114248415,-|id=chrX:114248361..114248415,-|ontology_enrichment_celltype=CL:0000055!1.26e-12!180;CL:0000548!8.05e-11!679;CL:0000004!8.05e-11!679;CL:0000255!8.05e-11!679;CL:0000220!1.43e-10!246;CL:0000012!1.48e-10!682;CL:0002371!2.39e-10!591;CL:0002321!2.62e-10!248;CL:0000680!1.86e-09!57;CL:0000056!1.86e-09!57;CL:0000355!1.86e-09!57;CL:0000144!2.34e-09!625;CL:0000057!6.43e-09!75;CL:0002368!1.56e-08!13;CL:0000188!2.97e-08!9;CL:0002551!3.66e-08!6;CL:0000187!5.68e-08!54;CL:0000003!2.87e-07!722|ontology_enrichment_celltype_v019=CL:0000188;5.54e-13;9!CL:0002551;1.89e-12;6!CL:0002368;8.66e-12;13!CL:0000569;2.80e-08;4|ontology_enrichment_celltype_v019_2=CL:0000188,6.69e-13,9;CL:0002551,2.00e-12,6;CL:0002368,8.35e-12,13;CL:0000569,2.06e-08,4;CL:0000011,2.06e-08,4;CL:0002321,3.52e-08,250;CL:0000680,4.60e-07,58;CL:0000056,4.60e-07,58;CL:0000355,4.60e-07,58;CL:0000187,9.08e-07,55|ontology_enrichment_development_v019=CL:0000011;2.80e-08;4|ontology_enrichment_disease=DOID:2394!7.80e-09!14|ontology_enrichment_disease_v019=DOID:0060072;7.17e-09;4!DOID:2394;4.56e-07;14!DOID:0060084;7.22e-07;3!DOID:127;7.22e-07;3|ontology_enrichment_disease_v019_2=DOID:0060072,6.63e-09,4;DOID:2394,5.46e-07,14;DOID:0060084,6.61e-07,3;DOID:127,6.61e-07,3|ontology_enrichment_uberon=UBERON:0000486!1.57e-12!82;UBERON:0000914!3.26e-12!83;UBERON:0002329!3.26e-12!83;UBERON:0003077!3.26e-12!83;UBERON:0003059!3.26e-12!83;UBERON:0007282!3.26e-12!83;UBERON:0009618!3.26e-12!83;UBERON:0007285!3.26e-12!83;UBERON:0004290!3.12e-11!70;UBERON:0005256!4.98e-10!143;UBERON:0000119!8.27e-09!312;UBERON:0000483!8.58e-09!309;UBERON:0001134!2.78e-08!61;UBERON:0002036!2.78e-08!61;UBERON:0003082!2.78e-08!61;UBERON:0002100!5.38e-08!216;UBERON:0003102!9.18e-08!95;UBERON:0002385!9.26e-08!63;UBERON:0001015!9.26e-08!63;UBERON:0000383!9.26e-08!63;UBERON:0000490!2.02e-07!138;UBERON:0000475!2.49e-07!365|ontology_enrichment_uberon_v019=UBERON:0002385;1.69e-11;31!UBERON:0001015;1.69e-11;31!UBERON:0000383;1.69e-11;31!UBERON:0001134;2.52e-08;16!UBERON:0002036;2.52e-08;16!UBERON:0002067;5.50e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0000486,9.67e-11,83;UBERON:0002329,2.09e-10,71;UBERON:0003059,2.09e-10,71;UBERON:0007282,2.09e-10,71;UBERON:0004290,2.09e-10,71;UBERON:0009618,2.09e-10,71;UBERON:0003077,3.58e-10,72;UBERON:0007285,3.58e-10,72;UBERON:0007524,6.06e-10,73;UBERON:0007503,9.01e-10,78;UBERON:0000490,1.57e-08,148;UBERON:0000483,4.69e-08,306;UBERON:0002067,5.68e-08,9;UBERON:0004016,5.68e-08,9;UBERON:0010083,5.68e-08,9;UBERON:0000119,7.67e-08,309;UBERON:0005256,7.67e-07,122|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,19.5833160762318,0,40.7918334592505,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,4.59710612239464,0.30120591877825,8.50434223383612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,0.361439152384566,0,0,0,0,0,0.221729397462564,0,0,4.00724817121796,1.11235332835329,0,0,0,0,0,0,0,4.30117297553062,0,0,0,0,0,0,0.35576626268671,0,0,1.52054421143703,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.379891534993739,1.85372853138506,0.573673241497627,0.709336764396714,0,0,0,3.11211035399766,0.134710672069688,0.817309515567294,0,0,3.04617861383936,5.61888138294577,12.5503800739779,6.42629326372745,18.5546507857149,3.56120477609889,7.02254033511243,0,0.122834317311768,0,0,0,0.910161361938026,0,3.19838616512726,1.37630371859161,1.10825646193673,0,0,0.150238058906597,0,0,0,0,0,0,0,0.18611685633159,0.168776332241266,0.194874010322397,0,0,0,0,0.201504196455281,0,14.301303134084,2.18196896472668,2.00763216772303,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03428022223955,1.31700342490351,3.37205259772859,4.12168786887686,0.833296006426766,0.325808305310325,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0,0,0,1.87467667973554,0,0.425325291727159,23.4643329481463,37.7824120068151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,8.45302752556,0,0,0.257207374262142,0,0,1.14382394926518,0,0,14.9838644775118,1.06617584622764,0,0,0,0,0,0,0,0,0,4.27910715122155,0.434343920002738,0.410952645100767,2.32779252211864,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.5622281931914,0,0,0,0,0,0,0,0.30239029332968,0.248107807818777,0,0,0.384417447767103,0,0,0,4.47208112027701,2.30830242907065,11.8263104659885,0.519254429183621,6.15915005837784,0,0,15.9300110859101,0.574072240823034,0,0.262248829918848,0.451199612907412,1.84836809050595,0,0,0,0,0,0,0,0,0,1.52925763827023,7.47968408035852,0,0,0,10.2580050046556,0,0.650756789328606,0,0,0,0,1.30012049207304,4.82051789532479,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4845 | |||
|description=CAGE_peak_at_chrX:114248361..114248415,- | |||
|id=chrX:114248361..114248415,- | |||
|ontology_enrichment_celltype=CL:0000055!1.26e-12!180;CL:0000548!8.05e-11!679;CL:0000004!8.05e-11!679;CL:0000255!8.05e-11!679;CL:0000220!1.43e-10!246;CL:0000012!1.48e-10!682;CL:0002371!2.39e-10!591;CL:0002321!2.62e-10!248;CL:0000680!1.86e-09!57;CL:0000056!1.86e-09!57;CL:0000355!1.86e-09!57;CL:0000144!2.34e-09!625;CL:0000057!6.43e-09!75;CL:0002368!1.56e-08!13;CL:0000188!2.97e-08!9;CL:0002551!3.66e-08!6;CL:0000187!5.68e-08!54;CL:0000003!2.87e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000188;5.54e-13;9!CL:0002551;1.89e-12;6!CL:0002368;8.66e-12;13!CL:0000569;2.80e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,6.69e-13,9;CL:0002551,2.00e-12,6;CL:0002368,8.35e-12,13;CL:0000569,2.06e-08,4;CL:0000011,2.06e-08,4;CL:0002321,3.52e-08,250;CL:0000680,4.60e-07,58;CL:0000056,4.60e-07,58;CL:0000355,4.60e-07,58;CL:0000187,9.08e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000011;2.80e-08;4 | |||
|ontology_enrichment_disease=DOID:2394!7.80e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:0060072;7.17e-09;4!DOID:2394;4.56e-07;14!DOID:0060084;7.22e-07;3!DOID:127;7.22e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,6.63e-09,4;DOID:2394,5.46e-07,14;DOID:0060084,6.61e-07,3;DOID:127,6.61e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000486!1.57e-12!82;UBERON:0000914!3.26e-12!83;UBERON:0002329!3.26e-12!83;UBERON:0003077!3.26e-12!83;UBERON:0003059!3.26e-12!83;UBERON:0007282!3.26e-12!83;UBERON:0009618!3.26e-12!83;UBERON:0007285!3.26e-12!83;UBERON:0004290!3.12e-11!70;UBERON:0005256!4.98e-10!143;UBERON:0000119!8.27e-09!312;UBERON:0000483!8.58e-09!309;UBERON:0001134!2.78e-08!61;UBERON:0002036!2.78e-08!61;UBERON:0003082!2.78e-08!61;UBERON:0002100!5.38e-08!216;UBERON:0003102!9.18e-08!95;UBERON:0002385!9.26e-08!63;UBERON:0001015!9.26e-08!63;UBERON:0000383!9.26e-08!63;UBERON:0000490!2.02e-07!138;UBERON:0000475!2.49e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.69e-11;31!UBERON:0001015;1.69e-11;31!UBERON:0000383;1.69e-11;31!UBERON:0001134;2.52e-08;16!UBERON:0002036;2.52e-08;16!UBERON:0002067;5.50e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,9.67e-11,83;UBERON:0002329,2.09e-10,71;UBERON:0003059,2.09e-10,71;UBERON:0007282,2.09e-10,71;UBERON:0004290,2.09e-10,71;UBERON:0009618,2.09e-10,71;UBERON:0003077,3.58e-10,72;UBERON:0007285,3.58e-10,72;UBERON:0007524,6.06e-10,73;UBERON:0007503,9.01e-10,78;UBERON:0000490,1.57e-08,148;UBERON:0000483,4.69e-08,306;UBERON:0002067,5.68e-08,9;UBERON:0004016,5.68e-08,9;UBERON:0010083,5.68e-08,9;UBERON:0000119,7.67e-08,309;UBERON:0005256,7.67e-07,122 | |||
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|short_description=p@chrX:114248361..114248415,- | |||
}} |
Revision as of 10:28, 14 September 2013
Short description: | p@chrX:114248361..114248415, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:114248361..114248415, - |
Coexpression cluster: | C4845_nasal_mesenchymal_Small_Alveolar_Smooth_Mammary_squamous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 6.69e-13 | 9 |
fibroblast of dermis | 2.00e-12 | 6 |
respiratory epithelial cell | 8.35e-12 | 13 |
cardiac mesenchymal cell | 2.06e-08 | 4 |
migratory trunk neural crest cell | 2.06e-08 | 4 |
embryonic cell | 3.52e-08 | 250 |
muscle precursor cell | 4.60e-07 | 58 |
myoblast | 4.60e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.60e-07 | 58 |
muscle cell | 9.08e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 9.67e-11 | 83 |
somite | 2.09e-10 | 71 |
presomitic mesoderm | 2.09e-10 | 71 |
presumptive segmental plate | 2.09e-10 | 71 |
dermomyotome | 2.09e-10 | 71 |
trunk paraxial mesoderm | 2.09e-10 | 71 |
paraxial mesoderm | 3.58e-10 | 72 |
presumptive paraxial mesoderm | 3.58e-10 | 72 |
dense mesenchyme tissue | 6.06e-10 | 73 |
epithelial vesicle | 9.01e-10 | 78 |
unilaminar epithelium | 1.57e-08 | 148 |
epithelium | 4.69e-08 | 306 |
dermis | 5.68e-08 | 9 |
dermatome | 5.68e-08 | 9 |
future dermis | 5.68e-08 | 9 |
cell layer | 7.67e-08 | 309 |
trunk mesenchyme | 7.67e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 6.63e-09 | 4 |
ovarian cancer | 5.46e-07 | 14 |
cell type benign neoplasm | 6.61e-07 | 3 |
leiomyoma | 6.61e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.