FFCP PHASE1:Hg19::chr1:24645865..24645871,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57822 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25839 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000342072,uc001bix.2_5end | |||
|coexpression_cluster_id=C683 | |||
|description=CAGE_peak_6_at_GRHL3_5end | |||
|id=chr1:24645865..24645871,+ | |||
|ontology_enrichment_celltype=CL:0000622!6.24e-11!5;CL:0002322!1.26e-09!5;CL:0000039!1.35e-09!7;CL:0000586!1.35e-09!7;CL:0002076!1.94e-09!43;CL:0000154!5.12e-09!6;CL:0002623!5.51e-07!3;CL:0000066!5.90e-07!254;CL:0002368!7.48e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000575;2.07e-17;2!CL:0001014;6.46e-17;2!CL:0001016;6.46e-17;2!CL:0000317;1.33e-16;2!CL:1000448;1.33e-16;2!CL:0002308;1.33e-16;2!CL:0002140;1.33e-16;2!CL:0000622;1.18e-14;5!CL:0002159;3.26e-14;14!CL:0000154;2.61e-12;6!CL:0002252;3.67e-09;1!CL:0000362;1.76e-08;9!CL:0000150;2.23e-08;9!CL:0002077;2.36e-07;34!CL:0000453;2.68e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,1.62e-17,2;CL:0001014,5.51e-17,2;CL:0001016,5.51e-17,2;CL:0000317,1.23e-16,2;CL:1000448,1.23e-16,2;CL:0002308,1.23e-16,2;CL:0002140,1.23e-16,2;CL:0000622,1.46e-14,5;CL:0002159,2.96e-14,14;CL:0000154,3.12e-12,6;CL:0002252,2.55e-09,1;CL:0000362,1.74e-08,9;CL:0000150,2.50e-08,9;CL:0002077,4.77e-08,34;CL:0000453,2.51e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009143;7.97e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.16e-09;1!DOID:4549;1.16e-09;1!DOID:5861;1.16e-09;1!DOID:6496;1.16e-09;1!DOID:3151;1.76e-09;1!DOID:3149;1.76e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.12e-09,1;DOID:4549,1.12e-09,1;DOID:5861,1.12e-09,1;DOID:6496,1.12e-09,1;DOID:3151,2.16e-09,1;DOID:3149,2.16e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000161!3.71e-11!35;UBERON:0000166!3.30e-08!21;UBERON:0004119!1.91e-07!169;UBERON:0000925!1.91e-07!169;UBERON:0006595!1.91e-07!169;UBERON:0001723!2.31e-07!3;UBERON:0001033!2.31e-07!3;UBERON:0010056!2.31e-07!3;UBERON:0003102!4.53e-07!95;UBERON:0001004!5.44e-07!72;UBERON:0001042!5.73e-07!10;UBERON:0009145!5.73e-07!10;UBERON:0000165!8.27e-07!28;UBERON:0000930!8.27e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0002419;1.33e-16;2!UBERON:0007771;1.33e-16;2!UBERON:0003297;1.33e-16;2!UBERON:0001821;1.33e-16;2!UBERON:0003487;1.33e-16;2!UBERON:0001820;1.33e-16;2!UBERON:0001723;6.37e-12;3!UBERON:0001033;6.37e-12;3!UBERON:0001043;8.14e-12;3!UBERON:0002372;8.67e-10;1!UBERON:0001961;8.67e-10;1!UBERON:0001744;8.67e-10;1!UBERON:0001042;8.67e-10;1!UBERON:0001735;8.67e-10;1!UBERON:0000964;3.68e-09;4!UBERON:0010409;3.68e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,1.23e-16,2;UBERON:0007771,1.23e-16,2;UBERON:0003297,1.23e-16,2;UBERON:0001821,1.23e-16,2;UBERON:0003487,1.23e-16,2;UBERON:0001820,1.23e-16,2;UBERON:0005089,1.23e-16,2;UBERON:0005088,1.23e-16,2;UBERON:0001043,6.38e-12,3;UBERON:0009143,6.38e-12,3;UBERON:0001723,7.11e-12,3;UBERON:0001033,7.11e-12,3;UBERON:0010056,7.11e-12,3;UBERON:0002372,8.68e-10,1;UBERON:0001961,8.68e-10,1;UBERON:0001744,8.68e-10,1;UBERON:0001735,8.68e-10,1;UBERON:0000964,3.26e-09,4;UBERON:0010409,3.26e-09,4;UBERON:0004348,3.26e-09,4;UBERON:0005427,3.26e-09,4;UBERON:0001042,5.59e-08,10;UBERON:0009145,5.59e-08,10;UBERON:0003102,5.84e-08,99;UBERON:0006562,2.71e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,3.64295288292542,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0,0.243947412259191,0.132529768321485,0.348581828608555,0.414644220061482,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,2.24803506515239,0,0.370353780634118,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38121483403844,0,0,0,0,0.616122696835318,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,1.72279661398852,1.30012049207304,0,0,0,0,0,0,0,0,0,1.15699440752685,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,0.670302275535787,0,0,0,1.68471475667626,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,0,0,0,0,0.885741385813839,0,0,0,0,0,0,4.46155981691531,0.692552326534174,0,2.99733075704478,0.538545866458633,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587954384486266,0,0,0,0,0,0,7.75912131907355,3.35373281427701,0,0,0,0,0.586654148204409,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,2.4747128070665,1.5476039091159,0,2.0126081255956,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95831310807222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0,0,0,0,0,0.366857197043358,0.346576998451015,0,0,0,0,0,0,0.523813388962845,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.222462803784138,0.706437835654626,0,0.560544326627578,0,0,0,0,0,0,0,0,0.414432328326074,1.0243108625637,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0.233939463462106,0,0,0,0,0,0,0,0,0,0,1.37415926980462,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0.801652215796681,0.0918948995348449,0,0,0,0,0,3.19850972851471,0,0.0645889098360061,0.248298857183432,0,0,0,3.26575121845442,2.05339980651169,5.79227655925453,0.286888821570705,0.665320713092027,0.0814032686109745,0,0,0,0,0,0.813792356631477,0.665756774185513,0,0.320568492303233 | |||
|short_description=p6@GRHL3 | |||
}} |
Revision as of 17:04, 10 January 2014
Short description: | p6@GRHL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GRHL3_5end |
Coexpression cluster: | C683_esophagus_tongue_tonsil_Corneal_cervical_Esophageal_throat |
Association with transcript: | -9bp_to_ENST00000342072, uc001bix.2_5end |
EntrezGene: | GRHL3 |
HGNC: | 25839 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 1.62e-17 | 2 |
CD1a-positive Langerhans cell | 5.51e-17 | 2 |
immature CD1a-positive Langerhans cell | 5.51e-17 | 2 |
sebum secreting cell | 1.23e-16 | 2 |
epithelial cell of sweat gland | 1.23e-16 | 2 |
epithelial cell of skin gland | 1.23e-16 | 2 |
acinar cell of sebaceous gland | 1.23e-16 | 2 |
acinar cell | 1.46e-14 | 5 |
general ecto-epithelial cell | 2.96e-14 | 14 |
protein secreting cell | 3.12e-12 | 6 |
epithelial cell of esophagus | 2.55e-09 | 1 |
epidermal cell | 1.74e-08 | 9 |
glandular epithelial cell | 2.50e-08 | 9 |
ecto-epithelial cell | 4.77e-08 | 34 |
Langerhans cell | 2.51e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin gland | 1.23e-16 | 2 |
epidermis gland | 1.23e-16 | 2 |
gland of integumental system | 1.23e-16 | 2 |
sebaceous gland | 1.23e-16 | 2 |
skin sebaceous gland | 1.23e-16 | 2 |
sweat gland | 1.23e-16 | 2 |
sweat gland placode | 1.23e-16 | 2 |
sebaceous gland placode | 1.23e-16 | 2 |
esophagus | 6.38e-12 | 3 |
esophageal region | 6.38e-12 | 3 |
tongue | 7.11e-12 | 3 |
gustatory system | 7.11e-12 | 3 |
future tongue | 7.11e-12 | 3 |
tonsil | 8.68e-10 | 1 |
mucosa-associated lymphoid tissue | 8.68e-10 | 1 |
lymphoid tissue | 8.68e-10 | 1 |
tonsillar ring | 8.68e-10 | 1 |
cornea | 3.26e-09 | 4 |
eye surface | 3.26e-09 | 4 |
optic eminence | 3.26e-09 | 4 |
corneal primordium | 3.26e-09 | 4 |
chordate pharynx | 5.59e-08 | 10 |
pharyngeal region of foregut | 5.59e-08 | 10 |
surface structure | 5.84e-08 | 99 |
pharynx | 2.71e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.12e-09 | 1 |
extraosseous chondrosarcoma | 1.12e-09 | 1 |
myxoid chondrosarcoma | 1.12e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 1.12e-09 | 1 |
skin squamous cell carcinoma | 2.16e-09 | 1 |
keratoacanthoma | 2.16e-09 | 1 |