FFCP PHASE1:Hg19::chr1:173174759..173174799,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11934 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IV74 | |||
|association_with_transcript=-62bp_to_ENST00000367718,uc001giv.2_5end | |||
|coexpression_cluster_id=C725 | |||
|description=CAGE_peak_2_at_TNFSF4_5end | |||
|id=chr1:173174759..173174799,- | |||
|ontology_enrichment_celltype=CL:0002139!2.55e-15!24;CL:0000071!1.46e-13!18;CL:0002546!1.46e-13!18;CL:0000115!3.75e-12!35;CL:1000413!2.56e-09!9;CL:0002078!3.78e-09!44;CL:0000213!3.58e-07!57;CL:0000215!3.58e-07!57;CL:0000222!4.05e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.63e-20;24!CL:0000115;3.73e-17;36!CL:0000071;3.79e-17;18!CL:1000413;2.35e-15;9!CL:0002544;1.56e-12;6!CL:0002078;1.32e-08;45!CL:0000213;5.02e-08;58!CL:0000215;5.02e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.55e-20,24;CL:0000115,1.78e-18,36;CL:0000071,2.74e-17,18;CL:0002546,2.74e-17,18;CL:1000413,2.26e-15,9;CL:0002078,6.59e-14,45;CL:0000213,1.15e-12,58;CL:0000215,1.15e-12,58;CL:0002544,1.88e-12,6 | |||
|ontology_enrichment_development_v019=CL:0002546;3.79e-17;18 | |||
|ontology_enrichment_disease=DOID:2394!8.50e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.74e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.80e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004535!9.13e-21!110;UBERON:0001009!1.03e-19!113;UBERON:0000055!1.75e-14!69;UBERON:0002049!9.43e-14!79;UBERON:0007798!9.43e-14!79;UBERON:0001986!1.46e-13!18;UBERON:0004638!1.46e-13!18;UBERON:0004852!1.46e-13!18;UBERON:0000178!6.85e-13!15;UBERON:0000179!6.85e-13!15;UBERON:0000463!6.85e-13!15;UBERON:0001981!1.24e-12!60;UBERON:0007500!1.24e-12!60;UBERON:0004537!1.24e-12!60;UBERON:0006965!1.24e-12!60;UBERON:0004872!5.03e-11!84;UBERON:0000487!3.37e-10!22;UBERON:0003915!2.56e-09!9;UBERON:0004700!2.56e-09!9;UBERON:0001917!2.56e-09!9;UBERON:0006914!2.04e-08!25;UBERON:0001637!3.04e-07!42;UBERON:0003509!3.04e-07!42;UBERON:0004572!3.04e-07!42;UBERON:0003914!9.95e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.47e-18;15!UBERON:0000179;5.47e-18;15!UBERON:0000463;5.47e-18;15!UBERON:0004638;3.79e-17;18!UBERON:0001986;3.79e-17;18!UBERON:0004852;3.79e-17;18!UBERON:0003915;2.35e-15;9!UBERON:0004700;2.35e-15;9!UBERON:0001917;2.35e-15;9!UBERON:0000487;1.43e-13;22!UBERON:0006914;1.20e-11;25!UBERON:0002390;2.64e-09;32!UBERON:0002193;1.45e-07;42!UBERON:0000490;2.16e-07;33!UBERON:0001009;2.66e-07;112!UBERON:0007500;5.39e-07;56!UBERON:0001981;5.39e-07;56!UBERON:0004537;5.39e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.95e-18,15;UBERON:0000179,7.95e-18,15;UBERON:0000463,7.95e-18,15;UBERON:0004638,2.74e-17,18;UBERON:0001986,2.74e-17,18;UBERON:0004852,2.74e-17,18;UBERON:0004535,4.83e-17,109;UBERON:0001009,2.29e-16,112;UBERON:0003915,2.26e-15,9;UBERON:0004700,2.26e-15,9;UBERON:0001917,2.26e-15,9;UBERON:0000487,1.10e-13,22;UBERON:0006914,9.61e-12,25;UBERON:0000055,3.23e-10,68;UBERON:0002049,2.01e-09,78;UBERON:0007798,2.01e-09,78;UBERON:0007500,1.99e-08,59;UBERON:0001981,1.99e-08,59;UBERON:0004537,1.99e-08,59;UBERON:0006965,1.99e-08,59;UBERON:0003081,5.90e-08,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,2.19093027116212,0,0,0,0.313454721478088,0,0.136874425072884,0.125542639594803,1.91033514369878,1.64201178899891,2.20390187678302,0,0.383829398097213,0,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0,0.800791974072025,0.574752439954483,0,0.954053754535364,0,0,0.382273228125229,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13769275984779,0.829050053357545,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0.473554504088034,0.821127996921047,0,0,0,0,0,0.767175371061182,0,0,0,1.5905718941022,0,0.0945348171640679,0,0,0.196468613246569,0,0,0,0,0,0,0,0,12.124506849369,8.60234595106124,4.51282652089873,7.91431118693613,1.67799774483962,0.825354125820202,5.43386912995707,2.06733407335463,4.98072767761394,1.67360306382335,1.20848795132744,0,0.24406205754817,1.10298924103761,0,2.94689103337463,0.44905874525234,1.91439516821648,0,0.949265659568129,4.946447086121,1.31780417436063,0,0,0,1.39293562831038,0.529636723252875,0,0,0,0,0,0,2.69421344139376,0.817309515567294,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0.30648779579902,0,7.0327953559213,0.538168907066586,0.640672166455702,0,0,0,0.772921620136887,1.48893485065272,0,0,0,0.0920498986422993,0,0,0,0,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,1.40241773803446,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.555530670951178,0,0,0,0,0.469634776943287,0,0,0.190254152234598,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0.290633938513962,0,37.9350693179876,1.23267807618516,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16344544182,0,0,2.6593811658487,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0,0,0,0,0,0.460385919864187,0,0,1.02341449813341,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0.910455840033585,0.131124414959424,0,0,0,0,0,0,1.36074964221213,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0.37064843820784,0.715624433709956,0,0.632758849437452,2.47819252100972,0,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0,0.578775534266688,0,0.405820753925408,0.30982349809975,0,0.143411352204052,0.196498082026242,0,0,0,0,0,0,0.384888450902048,0,0,0,0,0,0,0,3.04468565539302,0.764637207142375,3.41788312304498,3.33524485640905,2.05681136543097,0,2.16012574895246,2.37937552888281,0,0,0,0,0.432807638929335,0,0,2.3949524571938,0.383010740264733,1.90506224451495,0.324621940274555,0,3.65175486453108,0,2.50634477090067,0,0,0,0,0,0,0,0,0.586164286206121,0,0,0,2.33150377598474,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0.276283915531148,0,0,0.369254416383208,3.73247505194169,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5874531975136,0,0,2.82564461511045,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,8.00607047437679,10.3793708715062,10.546616900051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,13.726324813435,14.3305899447896,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,12.2501960404417,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.758245587708239,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11507737014592,0,0.776314784381297,0.414706207840855,12.2287188696678,4.17396049449387,0.450772826991655,4.18885733385675,2.84809513243263,0,0.107410557042488,0.464033759878494,7.96191777397232,9.20063858725253,0,0,0,0,0,0,0,0.694567422971502,0,3.76086566271124,0,0,1.06013487567529,0,0,0,0,0,0,0,0.132864840313363,0.490696182767533,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0.23658523500376,0.80057074828547,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,1.30165200803622,2.13033511897894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.845855261818682,0.386747327841463,0.0999411559249289,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,1.0334225573761,0.31037357147929,1.56984607612859,0,0.202117188958219,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p2@TNFSF4 | |||
}} |
Revision as of 22:19, 10 January 2014
Short description: | p2@TNFSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TNFSF4_5end |
Coexpression cluster: | C725_Mast_cord_mycosis_mesenchymal_Endothelial_hepatic_Mesenchymal |
Association with transcript: | -62bp_to_ENST00000367718, uc001giv.2_5end |
EntrezGene: | TNFSF4 |
HGNC: | 11934 |
UniProt: | Q8IV74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.55e-20 | 24 |
endothelial cell | 1.78e-18 | 36 |
blood vessel endothelial cell | 2.74e-17 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.74e-17 | 18 |
endothelial cell of artery | 2.26e-15 | 9 |
meso-epithelial cell | 6.59e-14 | 45 |
lining cell | 1.15e-12 | 58 |
barrier cell | 1.15e-12 | 58 |
aortic endothelial cell | 1.88e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 7.95e-18 | 15 |
haemolymphatic fluid | 7.95e-18 | 15 |
organism substance | 7.95e-18 | 15 |
blood vessel endothelium | 2.74e-17 | 18 |
endothelium | 2.74e-17 | 18 |
cardiovascular system endothelium | 2.74e-17 | 18 |
cardiovascular system | 4.83e-17 | 109 |
circulatory system | 2.29e-16 | 112 |
endothelial tube | 2.26e-15 | 9 |
arterial system endothelium | 2.26e-15 | 9 |
endothelium of artery | 2.26e-15 | 9 |
simple squamous epithelium | 1.10e-13 | 22 |
squamous epithelium | 9.61e-12 | 25 |
vessel | 3.23e-10 | 68 |
vasculature | 2.01e-09 | 78 |
vascular system | 2.01e-09 | 78 |
epithelial tube open at both ends | 1.99e-08 | 59 |
blood vessel | 1.99e-08 | 59 |
blood vasculature | 1.99e-08 | 59 |
vascular cord | 1.99e-08 | 59 |
lateral plate mesoderm | 5.90e-08 | 203 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.80e-07 | 14 |