FFCP PHASE1:Hg19::chr15:71146461..71146475,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55323 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24012 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000559140_5end | |||
|coexpression_cluster_id=C3509 | |||
|description=CAGE_peak_2_at_LARP6_5end | |||
|id=chr15:71146461..71146475,- | |||
|ontology_enrichment_celltype=CL:0000055!4.63e-30!180;CL:0000183!1.27e-16!59;CL:0000680!1.77e-16!57;CL:0000056!1.77e-16!57;CL:0000355!1.77e-16!57;CL:0000187!1.02e-15!54;CL:0000192!1.78e-15!42;CL:0000514!1.78e-15!42;CL:0000222!3.88e-14!119;CL:0000359!4.93e-14!32;CL:0000393!8.13e-14!60;CL:0000211!8.13e-14!60;CL:0000057!4.08e-13!75;CL:0002321!1.27e-11!248;CL:0000220!1.28e-11!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.83e-13;32!CL:0000192;7.05e-12;43!CL:0000187;1.55e-08;55!CL:0000393;1.79e-07;61!CL:0000211;1.79e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,6.25e-17,58;CL:0000056,6.25e-17,58;CL:0000355,6.25e-17,58;CL:0000187,3.70e-16,55;CL:0000192,6.63e-16,43;CL:0000514,6.63e-16,43;CL:0000393,3.12e-14,61;CL:0000211,3.12e-14,61;CL:0000359,3.45e-14,32;CL:0000222,6.88e-14,121;CL:0000057,1.75e-13,76;CL:0002321,5.79e-11,250 | |||
|ontology_enrichment_development_v019=CL:0000514;7.05e-12;43!CL:0000355;7.00e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.49e-22!365;UBERON:0000119!4.09e-19!312;UBERON:0000483!1.00e-18!309;UBERON:0000914!1.17e-16!83;UBERON:0002329!1.17e-16!83;UBERON:0003077!1.17e-16!83;UBERON:0003059!1.17e-16!83;UBERON:0007282!1.17e-16!83;UBERON:0009618!1.17e-16!83;UBERON:0007285!1.17e-16!83;UBERON:0000481!5.52e-16!347;UBERON:0004290!5.63e-15!70;UBERON:0000025!1.16e-14!194;UBERON:0001134!3.17e-14!61;UBERON:0002036!3.17e-14!61;UBERON:0003082!3.17e-14!61;UBERON:0004111!3.29e-14!241;UBERON:0000477!3.60e-14!286;UBERON:0002100!1.82e-13!216;UBERON:0000486!3.40e-13!82;UBERON:0002385!3.42e-13!63;UBERON:0001015!3.42e-13!63;UBERON:0000383!3.42e-13!63;UBERON:0005256!5.60e-13!143;UBERON:0001637!6.12e-13!42;UBERON:0003509!6.12e-13!42;UBERON:0004572!6.12e-13!42;UBERON:0004872!1.20e-12!84;UBERON:0002049!1.60e-12!79;UBERON:0007798!1.60e-12!79;UBERON:0000468!2.95e-12!659;UBERON:0001981!5.28e-12!60;UBERON:0007500!5.28e-12!60;UBERON:0004537!5.28e-12!60;UBERON:0006965!5.28e-12!60;UBERON:0004573!2.24e-11!33;UBERON:0004571!2.24e-11!33;UBERON:0000055!5.89e-11!69;UBERON:0003914!1.83e-10!118;UBERON:0000467!3.04e-10!625;UBERON:0000480!5.39e-10!626;UBERON:0001009!5.41e-10!113;UBERON:0004535!9.08e-10!110;UBERON:0000490!2.64e-09!138;UBERON:0000923!5.14e-09!604;UBERON:0005291!5.14e-09!604;UBERON:0006598!5.14e-09!604;UBERON:0002532!5.14e-09!604;UBERON:0002050!6.35e-09!605;UBERON:0005423!6.35e-09!605;UBERON:0000922!9.76e-09!612;UBERON:0003104!5.74e-08!238;UBERON:0009142!5.74e-08!238;UBERON:0000033!2.32e-07!123;UBERON:0003075!5.39e-07!86;UBERON:0007284!5.39e-07!86;UBERON:0002346!5.56e-07!90;UBERON:0000073!8.16e-07!94;UBERON:0001016!8.16e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.66e-10;33!UBERON:0004571;3.66e-10;33!UBERON:0001637;7.31e-09;42!UBERON:0003509;7.31e-09;42!UBERON:0004572;7.31e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.18e-18,309;UBERON:0000483,5.29e-18,306;UBERON:0007524,9.73e-16,73;UBERON:0003077,2.34e-15,72;UBERON:0007285,2.34e-15,72;UBERON:0002329,2.94e-15,71;UBERON:0003059,2.94e-15,71;UBERON:0007282,2.94e-15,71;UBERON:0004290,2.94e-15,71;UBERON:0009618,2.94e-15,71;UBERON:0007503,1.09e-14,78;UBERON:0001134,1.72e-14,62;UBERON:0002036,1.72e-14,62;UBERON:0003082,1.72e-14,62;UBERON:0000025,1.86e-13,192;UBERON:0000486,2.31e-13,83;UBERON:0004111,3.59e-13,240;UBERON:0002385,4.34e-13,64;UBERON:0001015,4.34e-13,64;UBERON:0000383,4.34e-13,64;UBERON:0001637,4.42e-13,42;UBERON:0003509,4.42e-13,42;UBERON:0004572,4.42e-13,42;UBERON:0010314,6.35e-13,132;UBERON:0003104,1.11e-12,160;UBERON:0009142,1.11e-12,160;UBERON:0002049,1.95e-12,78;UBERON:0007798,1.95e-12,78;UBERON:0004872,2.53e-12,83;UBERON:0007500,6.54e-12,59;UBERON:0001981,6.54e-12,59;UBERON:0004537,6.54e-12,59;UBERON:0006965,6.54e-12,59;UBERON:0004573,1.69e-11,33;UBERON:0004571,1.69e-11,33;UBERON:0005256,6.16e-11,122;UBERON:0000055,6.83e-11,68;UBERON:0001009,3.10e-10,112;UBERON:0002100,3.50e-10,199;UBERON:0004535,5.25e-10,109;UBERON:0000490,6.40e-10,148;UBERON:0003914,8.53e-10,117;UBERON:0003075,2.57e-07,82;UBERON:0007284,2.57e-07,82;UBERON:0002346,2.73e-07,86 | |||
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| |||
|short_description=p2@LARP6 | |||
}} |
Revision as of 00:21, 12 January 2014
Short description: | p2@LARP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LARP6_5end |
Coexpression cluster: | C3509_Fibroblast_Keratocytes_Myoblast_tridermal_Smooth_optic_embryonic |
Association with transcript: | 0bp_to_ENST00000559140_5end |
EntrezGene: | LARP6 |
HGNC: | 24012 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 6.25e-17 | 58 |
myoblast | 6.25e-17 | 58 |
multi-potent skeletal muscle stem cell | 6.25e-17 | 58 |
muscle cell | 3.70e-16 | 55 |
smooth muscle cell | 6.63e-16 | 43 |
smooth muscle myoblast | 6.63e-16 | 43 |
electrically responsive cell | 3.12e-14 | 61 |
electrically active cell | 3.12e-14 | 61 |
vascular associated smooth muscle cell | 3.45e-14 | 32 |
mesodermal cell | 6.88e-14 | 121 |
fibroblast | 1.75e-13 | 76 |
embryonic cell | 5.79e-11 | 250 |