FFCP PHASE1:Hg19::chr15:71146480..71146531,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55323 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24012 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BRS8,Q5XKE4 | |||
|association_with_transcript=0bp_to_ENST00000299213,ENST00000344870,NM_018357,NM_197958,uc002ass.2,uc002ast.2_5end | |||
|coexpression_cluster_id=C3509 | |||
|description=CAGE_peak_1_at_LARP6_5end | |||
|id=chr15:71146480..71146531,- | |||
|ontology_enrichment_celltype=CL:0000055!4.72e-29!180;CL:0000183!6.69e-18!59;CL:0000680!3.54e-17!57;CL:0000056!3.54e-17!57;CL:0000355!3.54e-17!57;CL:0000187!7.97e-17!54;CL:0000192!2.23e-16!42;CL:0000514!2.23e-16!42;CL:0000057!3.17e-14!75;CL:0000222!3.84e-14!119;CL:0000359!1.08e-13!32;CL:0000393!1.19e-13!60;CL:0000211!1.19e-13!60;CL:0000220!1.97e-11!246;CL:0002321!4.62e-11!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.89e-13;32!CL:0000192;3.05e-12;43!CL:0000187;2.50e-09;55!CL:0000393;2.37e-07;61!CL:0000211;2.37e-07;61!CL:0000057;8.74e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.84e-17,58;CL:0000056,1.84e-17,58;CL:0000355,1.84e-17,58;CL:0000187,4.17e-17,55;CL:0000192,1.22e-16,43;CL:0000514,1.22e-16,43;CL:0000057,1.19e-14,76;CL:0000222,1.88e-14,121;CL:0000393,6.38e-14,61;CL:0000211,6.38e-14,61;CL:0000359,9.69e-14,32;CL:0002321,2.26e-11,250 | |||
|ontology_enrichment_development_v019=CL:0000514;3.05e-12;43!CL:0000355;2.38e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.42e-25!365;UBERON:0000119!1.11e-18!312;UBERON:0000483!2.39e-18!309;UBERON:0000481!5.87e-18!347;UBERON:0000914!7.91e-18!83;UBERON:0002329!7.91e-18!83;UBERON:0003077!7.91e-18!83;UBERON:0003059!7.91e-18!83;UBERON:0007282!7.91e-18!83;UBERON:0009618!7.91e-18!83;UBERON:0007285!7.91e-18!83;UBERON:0004290!7.05e-16!70;UBERON:0002100!1.25e-15!216;UBERON:0001134!2.55e-15!61;UBERON:0002036!2.55e-15!61;UBERON:0003082!2.55e-15!61;UBERON:0005256!3.54e-15!143;UBERON:0000486!5.47e-15!82;UBERON:0004111!1.00e-14!241;UBERON:0002385!2.52e-14!63;UBERON:0001015!2.52e-14!63;UBERON:0000383!2.52e-14!63;UBERON:0000477!3.16e-14!286;UBERON:0000025!6.01e-14!194;UBERON:0000468!2.38e-12!659;UBERON:0004872!1.01e-11!84;UBERON:0001637!1.47e-11!42;UBERON:0003509!1.47e-11!42;UBERON:0004572!1.47e-11!42;UBERON:0000467!5.46e-11!625;UBERON:0004573!7.15e-11!33;UBERON:0004571!7.15e-11!33;UBERON:0002049!1.03e-10!79;UBERON:0007798!1.03e-10!79;UBERON:0000480!1.05e-10!626;UBERON:0001981!1.68e-10!60;UBERON:0007500!1.68e-10!60;UBERON:0004537!1.68e-10!60;UBERON:0006965!1.68e-10!60;UBERON:0003914!2.39e-10!118;UBERON:0003104!2.98e-10!238;UBERON:0009142!2.98e-10!238;UBERON:0000055!1.64e-09!69;UBERON:0000923!2.39e-09!604;UBERON:0005291!2.39e-09!604;UBERON:0006598!2.39e-09!604;UBERON:0002532!2.39e-09!604;UBERON:0002050!3.04e-09!605;UBERON:0005423!3.04e-09!605;UBERON:0000490!5.48e-09!138;UBERON:0000922!1.60e-08!612;UBERON:0001009!2.47e-08!113;UBERON:0004535!8.66e-08!110;UBERON:0000033!5.52e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.52e-10;33!UBERON:0004571;9.52e-10;33!UBERON:0001637;5.56e-08;42!UBERON:0003509;5.56e-08;42!UBERON:0004572;5.56e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.25e-19,309;UBERON:0000483,4.90e-19,306;UBERON:0007524,1.41e-16,73;UBERON:0003077,2.85e-16,72;UBERON:0007285,2.85e-16,72;UBERON:0002329,3.65e-16,71;UBERON:0003059,3.65e-16,71;UBERON:0007282,3.65e-16,71;UBERON:0004290,3.65e-16,71;UBERON:0009618,3.65e-16,71;UBERON:0007503,7.15e-16,78;UBERON:0001134,1.34e-15,62;UBERON:0002036,1.34e-15,62;UBERON:0003082,1.34e-15,62;UBERON:0003104,1.85e-15,160;UBERON:0009142,1.85e-15,160;UBERON:0000486,2.86e-15,83;UBERON:0002385,1.33e-14,64;UBERON:0001015,1.33e-14,64;UBERON:0000383,1.33e-14,64;UBERON:0004111,1.34e-14,240;UBERON:0000025,1.48e-13,192;UBERON:0005256,4.06e-13,122;UBERON:0002100,6.37e-13,199;UBERON:0010314,1.02e-11,132;UBERON:0001637,1.35e-11,42;UBERON:0003509,1.35e-11,42;UBERON:0004572,1.35e-11,42;UBERON:0004872,1.90e-11,83;UBERON:0004573,6.57e-11,33;UBERON:0004571,6.57e-11,33;UBERON:0002049,2.03e-10,78;UBERON:0007798,2.03e-10,78;UBERON:0003914,3.47e-10,117;UBERON:0007500,3.48e-10,59;UBERON:0001981,3.48e-10,59;UBERON:0004537,3.48e-10,59;UBERON:0006965,3.48e-10,59;UBERON:0000490,4.45e-10,148;UBERON:0000055,3.09e-09,68;UBERON:0001009,3.31e-08,112;UBERON:0004535,1.16e-07,109;UBERON:0000922,3.00e-07,592;UBERON:0003102,6.40e-07,99;UBERON:0005423,7.01e-07,581 | |||
|phase1_expression=51.9600164713792,80.5017969830097,93.8756331279168,108.079162221381,150.178927727569,93.3402220787395,151.979926900986,106.760658609134,73.3931615241546,57.5017411413531,35.5878595665938,52.6443706833715,66.7330454917987,105.44893272196,94.448252082456,141.860605901325,154.289799174138,163.589460246772,170.776479576677,106.007231004114,133.620452764986,106.888060024028,27.4786547645814,36.5454714944601,28.8748071068046,0.840547463227464,0.821005894499457,0.550975469195755,0,0,0.928896739896456,24.824373060931,35.5422984158335,113.884235131371,0,0,1.76160263600908,1.10799081706375,0,0,0,0,0,0.145398238779565,0.755751887377619,0,0,0.411167888021826,0.619412741790207,0,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0.426224750532694,0.290209238628584,1.13477044938228,1.24564449799115,0,0,0,1.81619850790011,0,0.316462387440884,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.68152568894461,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0.451725357233318,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0.289648807765598,85.3324032098866,136.152274519838,66.4885321586358,106.263110801062,107.787650786716,129.637634469937,117.702320163563,110.466115558698,37.9084616827912,40.7982091331118,49.5388191309231,37.394526054597,66.3017424692427,32.2582465222454,0,0,0,0,0,0,36.1747581407403,75.7006443693389,66.6509763086581,65.5757212631851,59.5689199418066,29.7127485295273,30.7222600809112,20.1565072152077,31.6631973791172,23.0957222807622,73.7177650309739,54.7395916117329,73.462679321999,54.0464728108427,57.5200782996049,32.505101095405,62.194636217449,45.8328725567121,50.5944903637415,56.9559395740877,58.2581545698695,0,0,31.834865806405,249.47991975105,127.896816781226,45.6811673805605,78.3063974644262,141.158016114946,109.892809627892,188.945722441578,134.187146338935,82.1597133455383,120.70076217444,35.7981567818475,156.049507901924,78.9361016537598,494.886864032978,77.7278591307498,90.7050196255674,101.774551455777,103.107489809226,85.4689146263734,54.4949130004724,84.3156727282709,81.9304896469492,150.132360048387,141.372340016564,174.570452070661,212.977758693498,370.806961177179,75.4145790514217,74.4455193238187,56.7981436742575,194.467086050211,145.275215208735,171.421625212427,48.548974392489,42.5153436582603,134.968269733335,106.3898143821,56.1170349677832,133.659130422255,59.2573242104947,182.394519204958,47.4261493597958,174.412239238546,53.7683939139964,119.664868234989,106.039813273141,61.0616499128577,118.182211221022,113.436036255716,84.4549928323607,44.7303637768969,40.7262525452385,19.2718455684761,15.2409233569708,18.2424490305144,23.6347205435045,17.662459561294,25.9133924943839,95.4342147211877,104.205031987247,64.9234130356658,62.6896702843172,118.388234993812,23.4247464078891,26.6363810323401,26.99323534695,23.7132041374647,23.5309799619799,24.676144387554,26.9662616320329,29.0407768385512,33.8577498112824,54.623503642224,116.40067225686,111.948131082141,154.359146954819,8.87285243752816,35.3817798003945,23.6315962672562,0,11.4379247845096,54.9016992955282,59.8139055477009,97.789525334129,59.2115647504506,35.7391398311924,469.489767952178,209.026891841195,60.6191636506148,38.1411032368003,46.9634776943287,53.2712192238362,53.2433339463102,51.1783669511069,16.5942923571448,12.0188062693282,0,0,0,89.9844806273059,83.655099843032,64.0823439535587,86.78220849906,75.5648240136301,57.1240191956165,0,0,0.829312462163088,0.432359860250884,0.6312121671319,10.2866588753314,27.1211782146377,16.4104426094066,46.1895604261304,7.60923446004594,8.40960561962969,13.7196687662678,102.599942176005,63.6501700496589,79.1320104008051,147.886842826898,239.629818720761,56.635284421252,157.701303134828,268.339187231325,128.860894505333,120.571762219787,128.948334643792,60.3367133237383,100.927618602808,88.909956372323,44.300121063948,65.0367266198859,34.0539305361375,179.356429350454,205.681896229669,174.552842603872,0,0,0,289.22720057834,311.275846110449,494.950060491293,130.013613387486,105.614829790897,65.3572515825619,0,0,0,0,20.3275699377971,36.4391590801341,22.4253755705532,26.1325373921584,16.5864075429822,0,0,0,44.4143200023286,174.559511849827,157.604978769546,147.451340825342,148.98820564563,256.10872201511,139.8668495013,149.871157664404,177.377853163668,252.474293953712,152.77188766315,202.252977890248,133.887649895316,184.836292644827,176.37571983878,0,0,0,57.5942385747893,68.2385301993038,87.6931850656073,172.43492643405,37.1377975357111,113.667338245395,165.42764168911,116.669252787208,147.020483925257,129.123717807142,108.872043824675,192.121786788803,162.036878815245,203.547736239979,169.89957330846,17.4037607411936,56.5428246255263,110.681348700947,126.410707429232,178.085162310569,174.919969555872,78.0575330329822,37.7375151811632,83.9254253019235,81.837965805826,44.2261325061149,80.7507026903366,60.5533590784396,30.8759760026059,84.8249889796591,101.875860516489,99.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| |||
|short_description=p1@LARP6 | |||
}} |
Revision as of 00:21, 12 January 2014
Short description: | p1@LARP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LARP6_5end |
Coexpression cluster: | C3509_Fibroblast_Keratocytes_Myoblast_tridermal_Smooth_optic_embryonic |
Association with transcript: | 0bp_to_ENST00000299213, ENST00000344870, NM_018357, NM_197958, uc002ass.2, uc002ast.2_5end |
EntrezGene: | LARP6 |
HGNC: | 24012 |
UniProt: | Q9BRS8Q5XKE4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.84e-17 | 58 |
myoblast | 1.84e-17 | 58 |
multi-potent skeletal muscle stem cell | 1.84e-17 | 58 |
muscle cell | 4.17e-17 | 55 |
smooth muscle cell | 1.22e-16 | 43 |
smooth muscle myoblast | 1.22e-16 | 43 |
fibroblast | 1.19e-14 | 76 |
mesodermal cell | 1.88e-14 | 121 |
electrically responsive cell | 6.38e-14 | 61 |
electrically active cell | 6.38e-14 | 61 |
vascular associated smooth muscle cell | 9.69e-14 | 32 |
embryonic cell | 2.26e-11 | 250 |