FFCP PHASE1:Hg19::chr16:28996398..28996413,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27040 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18874 | |||
|TSSclassifier=strong | |||
|UniProt=O43561 | |||
|association_with_transcript=-1bp_to_ENST00000360872_5end | |||
|coexpression_cluster_id=C3552 | |||
|description=CAGE_peak_4_at_LAT_5end | |||
|id=chr16:28996398..28996413,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.41e-34!172;CL:0000566!2.41e-34!172;CL:0002032!7.51e-33!165;CL:0000837!7.51e-33!165;CL:0000988!2.10e-32!182;CL:0000738!2.06e-31!140;CL:0002087!1.98e-27!119;CL:0002031!4.92e-27!124;CL:0000084!4.93e-24!25;CL:0000827!4.93e-24!25;CL:0000542!8.35e-19!53;CL:0000051!8.35e-19!53;CL:0000838!2.03e-18!52;CL:0000791!9.46e-18!18;CL:0000789!9.46e-18!18;CL:0002420!9.46e-18!18;CL:0002419!9.46e-18!18;CL:0000790!9.46e-18!18;CL:0000763!9.38e-15!112;CL:0000049!9.38e-15!112;CL:0000766!7.44e-13!76;CL:0000625!2.35e-11!11;CL:0000839!9.74e-11!70;CL:0000557!2.06e-10!71;CL:0002194!1.73e-08!63;CL:0000576!1.73e-08!63;CL:0000040!1.73e-08!63;CL:0000559!1.73e-08!63;CL:0002009!6.42e-08!65;CL:0000624!5.00e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.90e-39;25!CL:0000791;2.15e-28;18!CL:0000789;2.15e-28;18!CL:0002419;2.15e-28;18!CL:0000625;8.27e-18;11!CL:0000542;1.99e-12;53!CL:0000624;1.35e-10;6!CL:0000097;7.42e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,8.47e-39,25;CL:0000827,8.47e-39,25;CL:0000791,2.34e-28,18;CL:0000789,2.34e-28,18;CL:0002420,2.34e-28,18;CL:0002419,2.34e-28,18;CL:0000790,2.34e-28,18;CL:0000037,6.75e-27,168;CL:0000988,1.41e-26,177;CL:0000738,5.03e-26,136;CL:0002032,2.11e-24,161;CL:0000837,2.11e-24,161;CL:0000838,2.07e-23,52;CL:0000542,8.86e-23,53;CL:0000051,8.86e-23,53;CL:0002031,6.21e-21,120;CL:0002087,1.32e-20,115;CL:0000625,9.41e-18,11;CL:0000624,1.31e-10,6;CL:0000763,5.40e-07,108;CL:0000049,5.40e-07,108;CL:0000097,7.44e-07,5;CL:0002028,7.44e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000790;2.15e-28;18!CL:0000051;1.99e-12;53 | |||
|ontology_enrichment_disease=DOID:2531!4.92e-10!51;DOID:0060083!4.92e-10!51;DOID:1240!8.85e-10!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,6.77e-08,39;DOID:2531,1.14e-07,51;DOID:0060083,1.14e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002193!7.11e-20!112;UBERON:0002390!1.20e-19!102;UBERON:0003061!1.20e-19!102;UBERON:0000178!7.90e-12!15;UBERON:0000179!7.90e-12!15;UBERON:0000463!7.90e-12!15;UBERON:0002371!6.25e-09!80;UBERON:0002405!7.63e-09!115;UBERON:0001474!1.69e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.45e-19;15!UBERON:0000179;7.45e-19;15!UBERON:0000463;7.45e-19;15!UBERON:0002390;3.02e-11;32!UBERON:0002193;5.64e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.37e-19,15;UBERON:0000179,6.37e-19,15;UBERON:0000463,6.37e-19,15;UBERON:0002390,1.60e-14,98;UBERON:0003061,1.60e-14,98;UBERON:0002193,6.12e-14,108;UBERON:0004177,1.19e-08,7;UBERON:0005057,1.19e-08,7;UBERON:0002370,2.25e-08,4;UBERON:0005058,2.25e-08,4;UBERON:0009113,2.25e-08,4;UBERON:0003295,2.25e-08,4;UBERON:0005562,2.25e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,1.29902789771517,0.985207073399349,0.865818594450472,3.14691421479123,1.53531759238885,2.01260960310899,0,0,0,0.46480320348181,0,0,1.66198622559563,0.802177789880567,2.60413044859022,0.671746422719773,0.647787332037959,0.515151135268373,0.581592955118259,1.13362783106643,0.485168122375632,0.697287110717054,1.6446715520873,1.23882548358041,0.575384784644301,0,0,0,0.645484683583826,0,1.88242339542605,1.63743690034707,1.12361742222542,1.22433556948361,0.962787081228281,0.639337125799041,0.659702600373432,0.598390972864896,0,1.16083695451434,0.56738522469114,0.622822248995575,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,1.58030450865046,5.90129310341499,6.28817220398664,10.896879446974,10.0311897234407,5.54067853277104,7.57516489175573,5.84480185223734,14.2605384813022,11.1950244840438,8.63982188876122,5.95768500283034,19.2136979588513,17.5580119205836,12.3328428452757,13.8175008892924,10.1431080007268,9.78691316869599,9.09638815505025,6.27213142829861,9.74460347199069,12.2630557952615,8.93431358254838,7.84361045260459,8.60126618675061,13.0216690771284,9.50452044448374,9.03450714466637,9.59899583658138,4.99722906209383,8.28720382154059,7.39015197228942,6.24980903996671,7.2208852861547,5.50332734754636,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0.649094787309367,0.522389211897802,2.39324328933957,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0.760272105718513,0.732186172644509,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,8.38779888887836,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0,0.246217006087397,12.1682217872404,9.06650089961242,0,0,0,0,0,0,0.985326475791887,13.64750727205,19.074186629751,17.1502744566184,19.8200620479417,0.126995788584338,0.763976851116555,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21667878966063,0,0,0,0,0,0,10.8722589673721,5.71389204585589,6.253199670926,7.57223914050515,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,2.80428461064202,3.62873696531711,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.366277859273374,0.41254749960294,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1489521846434,12.9988325214204,8.54470780761244,4.2881719582402,2.05681136543097,8.43015304550532,8.64050299580984,9.51750211553125,0,0,0,0.371606350251437,0,4.19736875755643,11.3192653637464,0,0.191505370132367,0.211673582723883,0,0,0,0.156679895773023,0,0.169291777801603,0.963528450622197,0.201799707191048,1.70338495076131,0,1.22896305723383,1.3420566473545,0.166849141711909,4.10315000344285,12.8066839991811,2.46174797895425,6.22048060494761,0.66614393599564,0,0,0.293016358543788,0,12.7045458076325,0,0,0,0,0,0,0,1.31843099381408,0,0.597743964753209,2.76283915531148,0,0,0.123084805461069,0,0,0,1.53471711068062,0.493217028184668,4.7896618469388,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,8.17546385565892,0.470940769185074,3.15802195610297,0,0,0,0,4.13235105348985,7.59593032300897,0,0,0,0,0.265372693510018,0.611030144933625,0,3.08909847366257,2.61054873763638,0,0,0,0,0,0,0,2.41981432097328,0.30607276163049,0.063186579628488,0,0,2.65861549082874,4.96487933813248,2.82539626566503,4.77889719091835,0.569219092059585,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0.0969890164884194,0,0,1.09633539717401,0,0,1.36885967914362,0.801588202515337,0.213452994739353,1.39866726707491,0,0,0.171594997861965,0,5.46711156487903,0,2.71808412147228,3.24268823568233,0,2.60055530911367,0,0.136905378891993,0,0,11.3041562340105,0,0,0,0,0.429226048136571,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0.209818352539992,5.91361884508676,0,0,0.714695326373367,0,0,0,0,0,0,15.269208859377,0,1.58636928128176,0.146552233678082,1.32506888912221,0,0,0,0,0.533937062838473,0.628817220398664,0,2.97699613087171,1.58089305518355,0.243585196761792,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,4.24933387071162,0.758245587708239,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04993214870357,0,0,0,0,0.531459361253452,0,0,0,0,14.7990672932648,0.746842107858986,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0.20170506870352,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0.0887023701626388,2.65038171378292,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0.946656005844523,0.852134047591577,0,0,0,0,0,1.27595303699816,0.853425474875886,0,0.102662806856247,0,0,0,0,0,0,0,6.18947658623362,1.08043821351123,0.218559560503957,0,0,0,0,0.297046400327086,0,0.169927114687817,1.31577485171795,1.61144719933943,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.639701945702943,0.952257725854961,17.1160611065416,14.5875578595266,0,0.12729431655633,0,0.217716747896961,0.342233301085281,3.50230675675855,0.430333232356058,0,1.95367844666339,0,0,0,0,0.488965776731466,0.406896178315738,0,3.01910690386539,2.56454793842586 | |||
|short_description=p4@LAT | |||
}} |
Revision as of 03:00, 12 January 2014
Short description: | p4@LAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAT_5end |
Coexpression cluster: | C3552_acute_leukemia_Mast_CD4_mycosis_thymus_hairy |
Association with transcript: | -1bp_to_ENST00000360872_5end |
EntrezGene: | LAT |
HGNC: | 18874 |
UniProt: | O43561 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 8.47e-39 | 25 |
pro-T cell | 8.47e-39 | 25 |
mature alpha-beta T cell | 2.34e-28 | 18 |
alpha-beta T cell | 2.34e-28 | 18 |
immature T cell | 2.34e-28 | 18 |
mature T cell | 2.34e-28 | 18 |
immature alpha-beta T cell | 2.34e-28 | 18 |
hematopoietic stem cell | 6.75e-27 | 168 |
hematopoietic cell | 1.41e-26 | 177 |
leukocyte | 5.03e-26 | 136 |
hematopoietic oligopotent progenitor cell | 2.11e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.11e-24 | 161 |
lymphoid lineage restricted progenitor cell | 2.07e-23 | 52 |
lymphocyte | 8.86e-23 | 53 |
common lymphoid progenitor | 8.86e-23 | 53 |
hematopoietic lineage restricted progenitor cell | 6.21e-21 | 120 |
nongranular leukocyte | 1.32e-20 | 115 |
CD8-positive, alpha-beta T cell | 9.41e-18 | 11 |
CD4-positive, alpha-beta T cell | 1.31e-10 | 6 |
myeloid cell | 5.40e-07 | 108 |
common myeloid progenitor | 5.40e-07 | 108 |
mast cell | 7.44e-07 | 5 |
basophil mast progenitor cell | 7.44e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood | 6.37e-19 | 15 |
haemolymphatic fluid | 6.37e-19 | 15 |
organism substance | 6.37e-19 | 15 |
hematopoietic system | 1.60e-14 | 98 |
blood island | 1.60e-14 | 98 |
hemolymphoid system | 6.12e-14 | 108 |
hemopoietic organ | 1.19e-08 | 7 |
immune organ | 1.19e-08 | 7 |
thymus | 2.25e-08 | 4 |
hemolymphoid system gland | 2.25e-08 | 4 |
thymic region | 2.25e-08 | 4 |
pharyngeal gland | 2.25e-08 | 4 |
thymus primordium | 2.25e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
leukemia | 6.77e-08 | 39 |
hematologic cancer | 1.14e-07 | 51 |
immune system cancer | 1.14e-07 | 51 |