FFCP PHASE1:Hg19::chr16:28996446..28996491,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27040 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18874 | |||
|TSSclassifier=strong | |||
|UniProt=O43561 | |||
|association_with_transcript=31bp_to_ENST00000360872_5end | |||
|coexpression_cluster_id=C3552 | |||
|description=CAGE_peak_1_at_LAT_5end | |||
|id=chr16:28996446..28996491,+ | |||
|ontology_enrichment_celltype=CL:0000037!8.71e-42!172;CL:0000566!8.71e-42!172;CL:0000988!2.87e-40!182;CL:0002032!7.10e-38!165;CL:0000837!7.10e-38!165;CL:0000738!3.47e-33!140;CL:0002031!2.76e-28!124;CL:0002087!6.72e-26!119;CL:0000763!1.18e-25!112;CL:0000049!1.18e-25!112;CL:0000084!1.12e-20!25;CL:0000827!1.12e-20!25;CL:0000766!6.05e-19!76;CL:0000839!8.15e-18!70;CL:0000791!4.38e-16!18;CL:0000789!4.38e-16!18;CL:0002420!4.38e-16!18;CL:0002419!4.38e-16!18;CL:0000790!4.38e-16!18;CL:0000557!2.32e-15!71;CL:0002194!2.33e-13!63;CL:0000576!2.33e-13!63;CL:0000040!2.33e-13!63;CL:0000559!2.33e-13!63;CL:0002009!1.77e-12!65;CL:0000838!1.98e-11!52;CL:0002057!4.30e-11!42;CL:0000542!5.68e-11!53;CL:0000051!5.68e-11!53;CL:0000625!1.36e-10!11;CL:0000860!1.26e-09!45 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.92e-25;25!CL:0000791;1.01e-20;18!CL:0000789;1.01e-20;18!CL:0002419;1.01e-20;18!CL:0000625;1.83e-13;11!CL:0000473;1.11e-11;39!CL:0000234;1.11e-11;39!CL:0000860;2.13e-11;33!CL:0002057;2.13e-11;33!CL:0000766;1.72e-09;69!CL:0000763;1.90e-09;100!CL:0002087;8.78e-09;104!CL:0000576;1.06e-08;48!CL:0000624;5.40e-08;6!CL:0000738;8.55e-08;136!CL:0000097;9.71e-08;5!CL:0000988;2.36e-07;177!CL:0000542;3.65e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.43e-43,168;CL:0000988,4.57e-41,177;CL:0002032,3.56e-39,161;CL:0000837,3.56e-39,161;CL:0000738,3.29e-35,136;CL:0002031,6.15e-31,120;CL:0002087,7.93e-28,115;CL:0000763,5.66e-26,108;CL:0000049,5.66e-26,108;CL:0000084,2.99e-25,25;CL:0000827,2.99e-25,25;CL:0000766,2.96e-21,72;CL:0000791,1.03e-20,18;CL:0000789,1.03e-20,18;CL:0002420,1.03e-20,18;CL:0002419,1.03e-20,18;CL:0000790,1.03e-20,18;CL:0000839,1.67e-19,66;CL:0000557,7.47e-17,67;CL:0002194,6.27e-14,59;CL:0000576,6.27e-14,59;CL:0000040,6.27e-14,59;CL:0000559,6.27e-14,59;CL:0000473,9.13e-14,48;CL:0000234,9.13e-14,48;CL:0000625,1.81e-13,11;CL:0002009,4.09e-13,61;CL:0000838,2.80e-12,52;CL:0000542,7.27e-12,53;CL:0000051,7.27e-12,53;CL:0000860,4.92e-11,42;CL:0002057,4.92e-11,42;CL:0000624,5.49e-08,6;CL:0000097,9.75e-08,5;CL:0002028,9.75e-08,5;CL:0000134,2.23e-07,354;CL:0002320,8.94e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000790;1.01e-20;18!CL:0002057;5.32e-09;42!CL:0000049;2.13e-07;108!CL:0000051;3.65e-07;53 | |||
|ontology_enrichment_disease=DOID:1240!1.73e-09!39;DOID:2531!3.61e-07!51;DOID:0060083!3.61e-07!51;DOID:8692!4.38e-07!31 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,6.41e-09,39;DOID:2531,6.62e-07,51;DOID:0060083,6.62e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.08e-24!102;UBERON:0003061!1.08e-24!102;UBERON:0002193!2.86e-23!112;UBERON:0002371!1.54e-13!80;UBERON:0001474!3.60e-13!86;UBERON:0002405!1.66e-11!115;UBERON:0000178!3.23e-11!15;UBERON:0000179!3.23e-11!15;UBERON:0000463!3.23e-11!15;UBERON:0007023!2.34e-09!115;UBERON:0004765!4.58e-09!101;UBERON:0001434!4.58e-09!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.46e-13;15!UBERON:0000179;9.46e-13;15!UBERON:0000463;9.46e-13;15!UBERON:0002390;1.86e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.64e-27,98;UBERON:0003061,2.64e-27,98;UBERON:0002193,4.09e-25,108;UBERON:0002405,5.44e-16,93;UBERON:0002371,4.54e-14,76;UBERON:0001474,5.51e-13,82;UBERON:0000178,8.76e-13,15;UBERON:0000179,8.76e-13,15;UBERON:0000463,8.76e-13,15;UBERON:0004765,1.03e-10,90;UBERON:0001434,1.84e-08,100;UBERON:0002384,9.14e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0,0.236132343941038,14.9478425202584,27.2518872649021,8.51488678238418,0,0,0,0,0,1.17440175733939,9.41792194504192,9.82667792603694,10.4165217943609,2.46307021663917,7.12566065241755,1.03030227053675,4.9435401185052,6.42389104270976,5.82201746850759,3.71886459049095,5.75635043230556,4.64559556342655,1.43846196161075,1.7931249457037,1.89185783910868,1.03423704220986,6.45484683583826,1.35426486594342,6.96496656307637,10.9162460023138,4.94391665779186,2.75475503133812,7.38136762275015,1.91801137739712,0.989553900560148,3.19141852194611,0.852449501065388,2.61188314765726,3.40431134814684,0.622822248995575,1.7587406567972,3.65038042894141,1.08594422352558,1.81619850790011,3.31449872388808,0.949387162322653,0,0,0,0,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0.426730222566507,0,1.14950487990897,0,0,0.569212969109448,2.34894875748376,0,3.96513985737078,10.6496626966492,7.63813845847723,45.0465373560678,49.1263453436456,71.3437201528297,103.990000133002,44.6513505288019,53.4996020480249,83.7754932154019,174.803006852837,99.2821908190201,104.785532138053,107.509133914711,179.968304214574,159.71287880353,177.264061162763,191.510562325593,179.677913155733,92.6791019762878,74.1088093808505,103.490168566927,156.140274237246,77.0273192139862,81.0960771339007,78.4361045260459,77.4113956807555,67.7126792010675,71.2839033336281,66.8553528705311,77.4318997484231,78.7063577279779,69.612512100941,65.6902397536837,65.7237982912628,50.2787568072994,56.4815175142916,0,0,0,0,0,0,0,0,0,0,0.175669571386252,1.24430121722827,0,0,0.649094787309367,1.56716763569341,3.0580330919339,0.476981248610684,0.571994910780128,1.85728750664782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,7.75560528296651,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94848165003288,0,9.71218818712231,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,2.46217006087397,39.7807250736704,15.0117473911616,0,0,0,0,0,0,236.478354190053,244.774646556768,149.483571304897,133.455076864106,187.343771204748,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514414748524284,0,0.266422179016099,0,0,0,0,0,0,0,0,0,9.72990245129524,0.502257091432126,6.32501818449095,0,0,0,0,0,0,17.0369418870161,39.9972443209912,50.2412249422675,36.9627944485675,0,1.30139853857622,0,0,0,0,0,4.55857064779639,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0,0,0,34.1167243102764,19.1985638728569,38.8488310404537,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,1.54227252690289,0.270946437543853,0,0,0,0.447749509444357,4.82371728621056,4.70583811844821,0,0,0,1.13345112812495,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0,1.34060455107157,0,0.847294206991012,0,0,0,0,44.6553896124309,38.2318603571188,38.1663615406689,40.7376336032819,32.4976195738093,43.4477118499121,36.1821062949537,38.8631336384192,0,0,0,0,0,12.2363970559272,54.0455064550708,0.199579371432817,2.48956981172077,9.31363763985085,0.324621940274555,0.280797178113459,0,0,22.557102938106,3.04725200042886,1.4452926759333,0,0.851692475380653,0.687010689511529,0,0.223676107892416,1.00109485027145,6.83858333907141,105.237533732402,16.0013618632026,256.932894552184,13.6559506879106,4.22961015263549,0,1.02555725490326,0,7.57815013086853,0,0,0,0,0,0,0,0.494411622680279,0,0.796991953004279,16.3007510163377,0,0,0,0,0,0,1.53471711068062,1.08507746200627,64.6604349336737,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,1.15425387755696,0,0,0,0,0,0,0.533034776018635,48.0308501519962,2.82564461511045,21.6075186470203,0,0,0,0,34.012427901801,1.26598838716816,0,0,0,2.98578579323551,2.91909962861019,1.83309043480088,0.889563386041866,1.72989514525104,1.25306339406546,0.269604531922708,0.802577647298789,0.234264445725339,0,0.19566461893209,0,0,7.25944296291983,0,0.695052375913368,0.150323419414493,0,17.945654563094,22.1764610436584,17.2663105123974,13.1419672750255,1.70765727617876,0,0,0,0,1.39781334593624,0,0,0,0,1.35784623083787,0,0,7.8113897048648,0,0.189932387867636,0.391102765469606,1.04206466326994,3.84215390530835,0.39961921916426,0,0,0,0,35.4119726361483,0,4.75664721257649,7.42680208817566,0,8.37956710714405,0,0,0,0,89.3817004549669,0.837847203816763,0.458320848023367,0,0,0,0,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.551639951094387,0.367182116944987,23.12647369775,0,0,1.42939065274673,0,0,0,0,0,0,179.782620441052,0,1.24643300672138,0.879313402068495,13.2506888912221,0,0,0,0,1.49502377594773,1.41483874589699,4.97086866416635,13.8926486107346,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.248385611765534,0,2.87454938312845,2.27473676312472,0,1.6468607378872,0,0,0,0,0,0,0,0,0.457680136793847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07489822305536,0,0,0,1.16916185303633,0.398594520940089,0.163565394255844,0,0,0,145.590824182389,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0.252071696221718,0,0,0,0,0,0,0,0,12.4264786690818,0,0.376051641746286,1.0085253435176,0.781514011233092,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,1.09651553371436,1.48863353516788,0,0,0,0,0,0.227662191351298,0.532214220975833,0,0,0.135939465953663,0.131545547125698,0,0,1.80534113556182,0,0,0.913158720509496,0,0,0.857718530119876,0,0,0,0,0,0,0,1.29068207646083,2.721636016803,3.49374959512547,0.846774100381858,0,0,0,0,0.294450700845729,0.853425474875886,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,4.67984815056688,3.85870790539723,2.84127428655144,0,0.490296643507811,0,0,0.297046400327086,0,0,4.22927630909341,8.70181487643292,0,0,0,0,1.46067277649303,10.0920442348999,0,0,0,0,7.40637576721561,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0.803892390468535,0,0.20686599172379,1.91910583710883,3.09483760902862,54.1900953524091,29.4854892905325,0,0.25458863311266,0.202117188958219,0.870866991587845,0.342233301085281,27.5469896829663,1.64961072403156,0.665320713092027,3.74455035610483,0,0,0,0,0.977931553462932,0,0,21.7375697078308,0 | |||
|short_description=p1@LAT | |||
}} |
Revision as of 03:00, 12 January 2014
Short description: | p1@LAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAT_5end |
Coexpression cluster: | C3552_acute_leukemia_Mast_CD4_mycosis_thymus_hairy |
Association with transcript: | 31bp_to_ENST00000360872_5end |
EntrezGene: | LAT |
HGNC: | 18874 |
UniProt: | O43561 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.64e-27 | 98 |
blood island | 2.64e-27 | 98 |
hemolymphoid system | 4.09e-25 | 108 |
immune system | 5.44e-16 | 93 |
bone marrow | 4.54e-14 | 76 |
bone element | 5.51e-13 | 82 |
blood | 8.76e-13 | 15 |
haemolymphatic fluid | 8.76e-13 | 15 |
organism substance | 8.76e-13 | 15 |
skeletal element | 1.03e-10 | 90 |
skeletal system | 1.84e-08 | 100 |
connective tissue | 9.14e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
leukemia | 6.41e-09 | 39 |
hematologic cancer | 6.62e-07 | 51 |
immune system cancer | 6.62e-07 | 51 |