FFCP PHASE1:Hg19::chr2:200322723..200322739,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21637 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UPW6,B3KPQ9 | |||
|association_with_transcript=79bp_to_ENST00000417098,NM_001172509,uc002uuy.1_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_6_at_SATB2_5end | |||
|id=chr2:200322723..200322739,- | |||
|ontology_enrichment_celltype=CL:0002319!5.38e-09!25;CL:0002556!3.02e-07!6;CL:0000095!3.46e-07!17;CL:0000123!3.46e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0000540;4.71e-12;6!CL:0000404;4.71e-12;6!CL:0000062;4.67e-08;9!CL:0002319;7.56e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.53e-15,8;CL:0000540,4.71e-12,6;CL:0000031,4.71e-12,6;CL:0000404,4.71e-12,6;CL:0002319,7.86e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000031;4.71e-12;6 | |||
|ontology_enrichment_disease=DOID:8692!1.20e-07!31;DOID:14566!4.56e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:8692;9.72e-13;31!DOID:1240;3.82e-10;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,6.08e-14,31;DOID:1240,7.27e-11,39;DOID:2531,4.66e-08,51;DOID:0060083,4.66e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.01e-15!82;UBERON:0005743!9.23e-14!86;UBERON:0000073!1.68e-13!94;UBERON:0001016!1.68e-13!94;UBERON:0002619!1.58e-12!22;UBERON:0001950!2.11e-12!20;UBERON:0001869!6.08e-12!32;UBERON:0000955!6.52e-12!69;UBERON:0006238!6.52e-12!69;UBERON:0000956!7.00e-12!25;UBERON:0000203!7.00e-12!25;UBERON:0001893!6.81e-11!34;UBERON:0002020!1.31e-10!34;UBERON:0003528!1.31e-10!34;UBERON:0002791!4.93e-10!33;UBERON:0000033!8.69e-10!123;UBERON:0000153!2.43e-09!129;UBERON:0007811!2.43e-09!129;UBERON:0000200!1.35e-08!6;UBERON:0004121!1.50e-08!169;UBERON:0000924!1.68e-08!173;UBERON:0006601!1.68e-08!173;UBERON:0002616!2.05e-08!59;UBERON:0001049!2.64e-08!57;UBERON:0005068!2.64e-08!57;UBERON:0006241!2.64e-08!57;UBERON:0007135!2.64e-08!57;UBERON:0002780!4.60e-08!41;UBERON:0001890!4.60e-08!41;UBERON:0006240!4.60e-08!41;UBERON:0003129!6.56e-08!11;UBERON:0003080!9.66e-08!42;UBERON:0001758!3.02e-07!6;UBERON:0003672!3.02e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;6.71e-09;20!UBERON:0002022;1.91e-08;1!UBERON:0003112;1.91e-08;1!UBERON:0011158;1.91e-08;1!UBERON:0003128;1.91e-08;1!UBERON:0001703;1.91e-08;1!UBERON:0002241;1.91e-08;1!UBERON:0002619;4.17e-08;22!UBERON:0000956;3.83e-07;25!UBERON:0000203;3.83e-07;25!UBERON:0002021;5.01e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,6.94e-09,20;UBERON:0003112,1.78e-08,1;UBERON:0011158,1.78e-08,1;UBERON:0003128,1.78e-08,1;UBERON:0001703,1.78e-08,1;UBERON:0002241,1.78e-08,1;UBERON:0004761,1.78e-08,1;UBERON:0009617,1.78e-08,1;UBERON:0002022,2.06e-08,1;UBERON:0002619,4.30e-08,22;UBERON:0001017,1.63e-07,81;UBERON:0000956,3.93e-07,25;UBERON:0000203,3.93e-07,25;UBERON:0002021,5.24e-07,5 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0.204000691244253,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0.877955241761676,0.612975591598039,0.600952235626387,0,0,0,0,0,0,0,0,0,0.194874010322397,0,0,0,0.710019185033229,0.302256294682921,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532844358032199,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,49.4531444658963,18.5589315066647,28.3102488415049,17.2243462946354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.184161977871793,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.22672360764735,6.27072199396469,0,0,0,0,0,0.460511024178389,0,0,0.145016693914229,0,0.0890320356467374,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0.190630193923825,0,0.855877976067841,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0,0,0,0,0,0,0,0.912938716132769,0.156679895773023,2.50634477090067,0,0.481764225311099,0.201799707191048,0.425846237690326,0,4.30137070031841,2.46043718681657,3.17013369252626,2.9308214310306,0.278406173895242,0,2.97501246323581,0,0,0,0,0.242721043499027,0.111443384277478,0.568272293612826,0,0,0,0,0,0.333926115068718,0,0,0,0.552567831062295,0.251932747854276,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,0,0,0.649376687132959,49.9034495002985,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.438770794307945,0,0,0,0.227884111694002,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,1.1279783030859,1.37243774022418,0.335643173951685,0.75901493089674,0,0,0,0,0.216388639742091,0,0.0884575645033392,0.611030144933625,0.296521128680622,0.247127877893006,0.104421949505455,0,0,0,0,0.19566461893209,0,0,0,75.9060448843615,0.126373159256976,0.300646838828985,0.414752765588989,0,0.661983911750998,0,0,0,0.416024019039416,0,0,0,0,0,0,0.292357268344742,0,0,0.176512253383001,0,0.137041924646751,0.397429223405979,0.50648636764703,0,0.240476460754601,0,0,0,0.343609788497747,1.02956998717179,0,0.372757606696298,0,0.135904206073614,0.418411385249333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,1.09349201984444,0,0.0788057072991982,0.0524545881349981,0.105600336519406,0,0.191915197319445,0,0,0,0.542999601753713,0,0,0,0,0,0.339936274560377,0,0,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.976210119215705,0.876336514945499,0,0,0.124192805882767,0.138348634936231,0.124980407962107,0,0,0,2.34167452903441,0.869526171664951,0,0,0,0,0.50313580350515,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0.320075189082423,0,0,0,0,2.48830904013189,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.513833800771676,4.25089728976755,0,0.41023272848151,75.117365474072,0.276629009856872,1.13032951942296,0,0,0,0,0,0,0,4.37615688655804,0,0,0,0,0,0,0.810451015420736,0,0,0.824405532520789,84.781095397824,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0.526182188502793,0.118193840883968,0,0,0.157115589916002,0.280272163313789,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,15.9160620129095,0.83244063544298,0,0.109940516745429,0.301925687133347,0.0771741581079447,0,0.470317296361523,0,0,0.392616934229891,0,0,0.169927114687817,0,0,0,0,0.352894871715692,0,0,0,0,0.788857810965923,0.815897882290976,51.9257321505049,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0.320182037633146,0,0,0,0,0,0,0,0 | |||
|short_description=p6@SATB2 | |||
}} |
Revision as of 07:47, 21 January 2014
Short description: | p6@SATB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SATB2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 79bp_to_ENST00000417098, NM_001172509, uc002uuy.1_5end |
EntrezGene: | SATB2 |
HGNC: | 21637 |
UniProt: | Q9UPW6B3KPQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.53e-15 | 8 |
neuron | 4.71e-12 | 6 |
neuroblast | 4.71e-12 | 6 |
electrically signaling cell | 4.71e-12 | 6 |
neural cell | 7.86e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
neocortex | 6.94e-09 | 20 |
olfactory region | 1.78e-08 | 1 |
primary subdivision of skull | 1.78e-08 | 1 |
cranium | 1.78e-08 | 1 |
neurocranium | 1.78e-08 | 1 |
chondrocranium | 1.78e-08 | 1 |
cartilaginous neurocranium | 1.78e-08 | 1 |
head paraxial mesoderm | 1.78e-08 | 1 |
insula | 2.06e-08 | 1 |
regional part of cerebral cortex | 4.30e-08 | 22 |
central nervous system | 1.63e-07 | 81 |
cerebral cortex | 3.93e-07 | 25 |
pallium | 3.93e-07 | 25 |
occipital lobe | 5.24e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 6.08e-14 | 31 |
leukemia | 7.27e-11 | 39 |
hematologic cancer | 4.66e-08 | 51 |
immune system cancer | 4.66e-08 | 51 |