FFCP PHASE1:Hg19::chr2:238233328..238233343,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_at_chr2:238233328..238233343,- | |||
|id=chr2:238233328..238233343,- | |||
|ontology_enrichment_celltype=CL:0000055!8.71e-37!180;CL:0000057!4.65e-27!75;CL:0000048!2.27e-16!430;CL:0000723!2.01e-15!436;CL:0000680!3.49e-15!57;CL:0000056!3.49e-15!57;CL:0000355!3.49e-15!57;CL:0000034!1.49e-14!444;CL:0000187!3.59e-14!54;CL:0000183!5.68e-14!59;CL:0002620!1.20e-12!23;CL:0000393!2.12e-11!60;CL:0000211!2.12e-11!60;CL:0000192!3.88e-10!42;CL:0000514!3.88e-10!42;CL:0002320!3.77e-09!365;CL:0002570!4.99e-08!8;CL:0002371!5.47e-08!591;CL:0000134!3.69e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.29e-12;55!CL:0000723;2.73e-11;61!CL:0002620;4.79e-11;23!CL:0002570;1.71e-10;8!CL:0000048;2.51e-10;58!CL:0000034;7.58e-09;69!CL:0002320;6.97e-08;188!CL:0000188;1.75e-07;9!CL:0002540;2.05e-07;6!CL:0000499;3.01e-07;28!CL:0000057;3.42e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.61e-19,76;CL:0000048,4.36e-18,427;CL:0000723,2.45e-17,433;CL:0000034,2.25e-16,441;CL:0002320,2.01e-13,361;CL:0002620,3.34e-11,23;CL:0002570,1.19e-10,8;CL:0000134,1.79e-10,354;CL:0000680,1.44e-09,58;CL:0000056,1.44e-09,58;CL:0000355,1.44e-09,58;CL:0000187,5.40e-09,55;CL:0000219,1.49e-08,386;CL:0000188,1.03e-07,9;CL:0000393,2.10e-07,61;CL:0000211,2.10e-07,61;CL:0000499,3.14e-07,28;CL:0002540,3.36e-07,6;CL:0000153,8.60e-07,9;CL:0000447,8.60e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;6.60e-08;5!DOID:450;6.60e-08;5!DOID:66;6.60e-08;5!DOID:423;6.60e-08;5!DOID:0080000;6.60e-08;5!DOID:11722;6.60e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.15e-08,5;DOID:450,6.15e-08,5;DOID:66,6.15e-08,5;DOID:423,6.15e-08,5;DOID:0080000,6.15e-08,5;DOID:11722,6.15e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.02e-19!83;UBERON:0002329!4.02e-19!83;UBERON:0003077!4.02e-19!83;UBERON:0003059!4.02e-19!83;UBERON:0007282!4.02e-19!83;UBERON:0009618!4.02e-19!83;UBERON:0007285!4.02e-19!83;UBERON:0004290!4.73e-17!70;UBERON:0002385!1.89e-15!63;UBERON:0001015!1.89e-15!63;UBERON:0000383!1.89e-15!63;UBERON:0001134!6.56e-15!61;UBERON:0002036!6.56e-15!61;UBERON:0003082!6.56e-15!61;UBERON:0000486!1.83e-14!82;UBERON:0003102!9.06e-11!95;UBERON:0005256!2.71e-10!143;UBERON:0002384!4.73e-10!375;UBERON:0002199!3.92e-09!45;UBERON:0002416!3.92e-09!45;UBERON:0001135!1.47e-07!15;UBERON:0001013!1.75e-07!14;UBERON:0002097!1.90e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.04e-10;31!UBERON:0001015;1.04e-10;31!UBERON:0000383;1.04e-10;31!UBERON:0002204;2.50e-10;70!UBERON:0002384;7.80e-09;198!UBERON:0002199;7.28e-08;46!UBERON:0002416;7.28e-08;46!UBERON:0001013;7.69e-08;14!UBERON:0004905;3.34e-07;8!UBERON:0000982;3.34e-07;8!UBERON:0004770;3.34e-07;8!UBERON:0002097;6.35e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.45e-14,371;UBERON:0002199,4.97e-11,46;UBERON:0002416,4.97e-11,46;UBERON:0007524,8.53e-10,73;UBERON:0003102,8.91e-10,99;UBERON:0002329,1.74e-09,71;UBERON:0003059,1.74e-09,71;UBERON:0007282,1.74e-09,71;UBERON:0004290,1.74e-09,71;UBERON:0009618,1.74e-09,71;UBERON:0001134,2.72e-09,62;UBERON:0002036,2.72e-09,62;UBERON:0003082,2.72e-09,62;UBERON:0003077,3.14e-09,72;UBERON:0007285,3.14e-09,72;UBERON:0002385,9.49e-09,64;UBERON:0001015,9.49e-09,64;UBERON:0000383,9.49e-09,64;UBERON:0002097,1.21e-08,41;UBERON:0000486,2.62e-08,83;UBERON:0007503,7.44e-08,78;UBERON:0001013,7.46e-08,14;UBERON:0003104,1.45e-07,160;UBERON:0009142,1.45e-07,160;UBERON:0004905,2.91e-07,8;UBERON:0000982,2.91e-07,8;UBERON:0004770,2.91e-07,8 | |||
|phase1_expression=1.09007027562334,4.06790995392868,0.281908808191942,2.00146596706261,2.68176656656373,0.872338524100369,0,2.52687949370732,1.04474251279935,0,0,0.218441372130172,0,2.22779435328084,2.31978163009541,2.01697543935533,0.602694528023977,1.46062018077475,0.975865597581014,0.738726348460727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,3.2529523714611,3.50936537445123,1.59331170856906,7.95285947051099,3.89307896242109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,2.40597972162702,0.926864265692532,13.4813211751942,1.77334191099179,0.560677600142307,0,0.98667019366864,0.311211035399766,1.34710672069688,1.63461903113459,3.78393569112329,9.79499071615998,0.468642863667593,1.87296046098192,0.570471821544449,2.69007624993242,0.469737994575059,0.971237666208789,0.561803226808994,2.44985005505872,1.47401180774122,1.23990937410919,2.37600571456411,4.45080472701402,0,1.43723628363248,1.0100166837244,0.750711119231785,0,0.877955241761676,2.75839016219118,1.05166641234618,0.340296549480063,11.1221574127094,5.33893472046419,5.29829752898905,13.5040993237981,2.47326070172253,9.01741890159702,1.8611685633159,3.71307930930786,2.24105111870757,11.107086066741,1.19664868234989,0.323292113637624,12.7803453305981,1.20902517873168,1.52604533079439,0,0,0,0,0,0.116193942869518,0,0,0,0,5.14592750554308,0,1.85747171212792,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.411309970813294,0,0,0.224262168690721,0,0.2933531432838,1.55126058909333,3.57656445851882,3.381211010224,2.39344304926383,3.12022310734098,1.28603687131071,1.41849132023278,1.0656887160644,2.7165818795048,3.25572963234866,0,1.95441710576241,2.13235169245527,2.37585561880029,0,0,0,0,0,0,1.19812427745791,2.29723871668228,0,1.15825045334063,1.02738161275192,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,5.00170521059677,2.98391526069709,1.03985430765404,1.60586089917446,1.41932173530541,1.05427273493442,1.80567659836631,0,2.0694614258501,1.32845119707087,1.84369168541703,1.30325421702124,3.32861967686659,4.11772108573027,0,0,0,0,0,0,1.73675465473144,1.07423381301644,1.96462066103151,0.384417447767103,0.511707249066704,1.76939313257968,0,4.62629081407967,4.6166048581413,0.9033987161519,0.519254429183621,4.06736324609857,0,0,0,3.3296189967736,5.82691737621495,3.67148361886388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83674364755032,3.08097234229289,3.37708084397485,1.10269257987624,2.90034661144339,4.20548412351263,1.96021243057032,1.60257664164127,0,0,0,0,0,13.2221185668869,1.3940745403212,1.84820148105653,1.06461206063404,3.47973196830029,0,0.143124886741991,1.116475108079,0.316379424718726,0.571890581771475,0.511795582622668,5.99114583247489,0.95460974377781,0.78494864019923,1.97859703341646,1.64722217841633,1.17812402345686,0,0,0.421258456238981,1.46290121726877,0.243713489631284,0,2.18399858252777,6.50464986987079,2.26016233240486,0,0,0,1.73632660280006,2.62357900818653,0.202910376962704,0.30982349809975,1.40847801266121,0.286822704408103,0.589494246078727,0,0.354761064070598,2.53329162357197,3.95153871551882,0.75894634753143,0.699869440489966,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,2.17727711363265,0,0,0,0.295930216910801,0,2.22273980289274,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0.31900115973192,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,2.40773294189637,0,0,0,0,0,1.20990716048664,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0.138674673013139,0,0,0,1.22308667769421,1.54787429224455,0,0,0,0.0969890164884194,0,0.90392296312213,0.685209623233754,0,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,1.52997326454483,0.577901179803038,0,0,0,0,0,0.558564802544508,0,0,0,0.429226048136571,0,0.0671834724867263,1.08089965062721,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,1.42939065274673,0.662091970365432,0,2.71499800876856,6.91377192961014,4.89881040164114,0,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58792401667989,0,0,4.0298796779456,6.54397267572229,4.43844689202091,5.11388114242741,13.3330987928865,4.44905610798268,2.51724075236616,4.23446586537069,2.17612080815893,2.66139269981341,0.955780602982214,0,1.39736661188633,3.7323558705677,8.24109315129784,4.17396049449387,0.751288044986092,1.52322084867518,0.406870733204662,2.90957854724095,1.07410557042488,0.928067519756987,2.78667122089031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| |||
|short_description=p@chr2:238233328..238233343,- | |||
}} |
Revision as of 09:24, 21 January 2014
Short description: | p@chr2:238233328..238233343, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238233328..238233343, - |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.61e-19 | 76 |
multi fate stem cell | 4.36e-18 | 427 |
somatic stem cell | 2.45e-17 | 433 |
stem cell | 2.25e-16 | 441 |
connective tissue cell | 2.01e-13 | 361 |
skin fibroblast | 3.34e-11 | 23 |
mesenchymal stem cell of adipose | 1.19e-10 | 8 |
mesenchymal cell | 1.79e-10 | 354 |
muscle precursor cell | 1.44e-09 | 58 |
myoblast | 1.44e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.44e-09 | 58 |
muscle cell | 5.40e-09 | 55 |
motile cell | 1.49e-08 | 386 |
cell of skeletal muscle | 1.03e-07 | 9 |
electrically responsive cell | 2.10e-07 | 61 |
electrically active cell | 2.10e-07 | 61 |
stromal cell | 3.14e-07 | 28 |
mesenchymal stem cell of the bone marrow | 3.36e-07 | 6 |
GAG secreting cell | 8.60e-07 | 9 |
carbohydrate secreting cell | 8.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 7.45e-14 | 371 |
integument | 4.97e-11 | 46 |
integumental system | 4.97e-11 | 46 |
dense mesenchyme tissue | 8.53e-10 | 73 |
surface structure | 8.91e-10 | 99 |
somite | 1.74e-09 | 71 |
presomitic mesoderm | 1.74e-09 | 71 |
presumptive segmental plate | 1.74e-09 | 71 |
dermomyotome | 1.74e-09 | 71 |
trunk paraxial mesoderm | 1.74e-09 | 71 |
skeletal muscle tissue | 2.72e-09 | 62 |
striated muscle tissue | 2.72e-09 | 62 |
myotome | 2.72e-09 | 62 |
paraxial mesoderm | 3.14e-09 | 72 |
presumptive paraxial mesoderm | 3.14e-09 | 72 |
muscle tissue | 9.49e-09 | 64 |
musculature | 9.49e-09 | 64 |
musculature of body | 9.49e-09 | 64 |
skin of body | 1.21e-08 | 41 |
multilaminar epithelium | 2.62e-08 | 83 |
epithelial vesicle | 7.44e-08 | 78 |
adipose tissue | 7.46e-08 | 14 |
mesenchyme | 1.45e-07 | 160 |
entire embryonic mesenchyme | 1.45e-07 | 160 |
articulation | 2.91e-07 | 8 |
skeletal joint | 2.91e-07 | 8 |
articular system | 2.91e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.15e-08 | 5 |
myotonic disease | 6.15e-08 | 5 |
muscle tissue disease | 6.15e-08 | 5 |
myopathy | 6.15e-08 | 5 |
muscular disease | 6.15e-08 | 5 |
myotonic dystrophy | 6.15e-08 | 5 |